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Fig. 43 in The scope of flavin-dependent reactions and processes in the model plant Arabidopsis thaliana
Fig. 43. Reaction of N-monooxygenation by flavin-containing monooxygenases. The single flavin-containing monooxygenase belonging to clade 1 is involved in pathogen defense, as it catalyzes the N-oxygenation of pipecolic acid to NHP, a key metabolite required for the initiation of pathogen-induced immune response (Hartmann et al., 2018).
Fig. 46 in The scope of flavin-dependent reactions and processes in the model plant Arabidopsis thaliana
Fig. 46. Reactions catalyzed by NADPH oxidases. The two electrons delivered by NADPH are either used for the reduction of dioxygen to hydrogen peroxide (top reaction) or the reduction of two molecules of dioxygen to two molecules of superoxide (bottom reaction).
Fig. 5 in The scope of flavin-dependent reactions and processes in the model plant Arabidopsis thaliana
Fig. 5. Reaction of glycerol 3-phosphate dehydrogenase. The secondary alcohol group is oxidized to the keto-group (shown in red) generating dihydroxyacetone phosphate, which is further converted by triose phosphate isomerase, a glycolytic enzyme, to glyceraldehyde 3-phosphate. The reduced FAD is reoxidized by membrane-associated CoQ and thus the electrons enter the mETC. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 1 in The scope of flavin-dependent reactions and processes in the model plant Arabidopsis thaliana
Fig. 1. Association with other cofactors (A) and mode of flavin binding (B). (A) In 36 A. thaliana flavoenzymes additional iron-dependent cofactors are part of the functional enzyme and contain either heme (18), iron-sulfur (Fe–S) clusters (10) or a combination of the molypdocofactor (Moco) with 2Fe–2S clusters (6) or heme (2). In acetohydroxyacid synthase the FAD cofactor is associated with thiamine pyrophosphate (TPP). (B) In most cases the FMN and FAD cofactor is bound non-colavently (FMN = 44 and FAD = 180), while mono-covalent (exclusively to the 8α-position of FAD) and bi-covalent linkage (to the 6- and 8α-position of FAD) are comparatively rare (9 and 10.3% of the FAD-containing flavoenzymes, respectively). The insert shows the isoalloxazine ring with the numbering scheme and indicates the positions of covalent attachment. The FMN cofactor is not involved in covalent bond formation in the flavoenzymes of A. thaliana.
Simple example to show STEMMUS_SCOPE & MODFLOW 6 BMI coupling (adding notebook for creating MODFLOW model)
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Time series of fluxes, biochemical and spectral variables simulated SCOPE model
<p>The dataset contains:</p> <ul> <li>Time series of fluxes, biochemical and spectral variables simulated with Soil Canopy Observation of Photochemistry and Energy fluxes (SCOPE) model, parameterized using structural vegetation parameters as well as meteorological data from the research station of Majadas de Tiétar (39°56′24.68″N, 5°45′50.27″W) (Cáceres, Spain)</li> <li>Time series of decomposed Photochemical Reflectance Index, far-red solar-induced chlorophyll fluorescence and far-red fluorescence yield into seasonal, diurnal and sub-diurnal components with Singular Spectrum Analysis</li> </ul>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.