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ShareScore release 0.9.0
Dataset results
98 results for “Targeted capture”
Data from: Sequence Capture using PCR-generated Probes (SCPP): a cost-effective method of targeted high-throughput sequencing for non-model organisms
Recent advances in high-throughput sequencing library preparation and subgenomic enrichment methods have opened new avenues for population genetics and phylogenetics of non-model organisms. To multiplex large numbers of indexed samples while sequencing predominantly orthologous, targeted regions of the genome, we propose modifications to an existing, in-solution capture that utilizes PCR products as target probes to enrich library pools for the genomic subset of interest. The sequence capture using PCR-generated probes (SCPP) protocol requires no specialized equipment, is highly flexible, and significantly reduces experimental costs for projects where a modest scale of genetic data is optimal (25-100 genomic loci). Our alterations enable application of this method across a wider phylogenetic range of taxa and result in higher capture efficiencies and coverage at each locus. Efficient and consistent capture over multiple SCPP experiments and at various phylogenetic distances is demonstrated, extending the utility of this method to both phylogeographic and phylogenomic studies.
Capture of non target arthropods in citrus agroecosystems using control methods against Anastrepha ludens
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Code and data for the article "Feasible deployment of carbon capture and storage and the requirements of climate targets"
<p>Here, we present data and code for our study “Feasible deployment of carbon capture and storage and the requirements of climate targets” (2024), where we project feasible ranges of carbon capture and storage (CCS) deployment in this century based on historical evidence of CCS deployment and other policy-driven technologies.</p>
Data from: Targeted sequence capture and resequencing implies a predominant role of regulatory regions in the divergence of a sympatric lake whitefish species pair (Coregonus clupeaformis)
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Data from: A dedicated target capture approach reveals variable genetic markers across micro- and macro-evolutionary time scales in palms
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Target-capture phylogenomics provide insights on gene and species tree discordances in Old World Treefrogs (Anura: Rhacophoridae)
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Data from: Targeted capture of complete coding regions across divergent species
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Data from: Comparison of target-capture and restriction-site associated DNA sequencing for phylogenomics: a test in cardinalid tanagers (Aves, genus: Piranga)
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Data from: Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales
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Data from: Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales
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Data from: Sequence Capture using PCR-generated Probes (SCPP): a cost-effective method of targeted high-throughput sequencing for non-model organisms
Open the record for dataset details and reuse information.
Target capture bisulfite sequencing (tcBS-seq) to evaluate clonal methylation inheritance [BiSulfite-seq 2]
GEO Series GSE234029. Mus musculus. 16 samples. Type: Methylation profiling by high throughput sequencing.
Sensitive and unbiased genome-wide profiling of base-editor-induced off-target activity with CHANGE-seq-BE [Hybrid Capture Sequencing for CBE and ABE]
GEO Series GSE308237. Homo sapiens. 36 samples. Type: Other.
Targeted single cell RNA-sequencing of transcription factors facilitates biological insights from human cell experimental models [iPSC neuron pre-capture]
GEO Series GSE168590. Homo sapiens. 752 samples. Type: Expression profiling by high throughput sequencing.
Combinatorial single-cell CRISPR screens by direct guide RNA capture and targeted sequencing
GEO Series GSE146194. Homo sapiens. 11 samples. Type: Expression profiling by high throughput sequencing.
Target capture bisulfite sequencing (tcBS-seq) to evaluate clonal methylation inheritance
GEO Series GSE234695. Mus musculus. 40 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Targeted single cell RNA-sequencing of transcription factors facilitates biological insights from human cell experimental models [intestinal stromal cells pre-capture]
GEO Series GSE168626. Homo sapiens. 252 samples. Type: Expression profiling by high throughput sequencing.
Classification of cancer cell lines using a promoter-targeted liquid hybridization capture-based bisulfite sequencing approach
GEO Series GSE44866. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Unbiased Capture Hi-C reveals the potential targets of breast cancer susceptibility loci
GEO Series GSE55634. Homo sapiens. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A genome-wide analysis of Cas9 binding specificity using ChIP-seq and targeted sequence capture
GEO Series GSE61099. Mus musculus; Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.