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152
datasets available to search
ShareScore release 0.9.0
Dataset results
152 results for “U2OS”
Transcriptome data from U2OS cells and hTERT CRISPR clones
GEO Series GSE226963. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Gene expression and ChIP-seq analyses of mesenchymal stem cells, osteoblasts and the U2OS osteosarcoma cell line
GEO Series GSE35576. Homo sapiens. 17 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing.
CDDP treatment of U2OS cells with NCOR and SMRT knock-down
GEO Series GSE34226. Homo sapiens. 12 samples. Type: Expression profiling by array.
QuantSeq from Nutlin-3a-treated MCF-7, U2OS, and RPE-1 cells
GEO Series GSE223513. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing.
U2OS array-CGH
GEO Series GSE11411. Homo sapiens. 2 samples. Type: Genome variation profiling by genome tiling array.
SUMOylation Regulates the Anti-Proliferative Gene Signature Programs of Glucocorticoid Receptor (U2Os cell line)
GEO Series GSE48330. Homo sapiens. 12 samples. Type: Expression profiling by array.
ANKRA2-regulated transcriptome in U2OS
GEO Series GSE162162. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
Genome wide localizatoin of ORCA during G1 phase in U2OS cells and map of methyl-CpG sites in U2OS cells
GEO Series GSE81165. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Genome wide analysis of ER beta in U2OS cells
GEO Series GSE21790. Homo sapiens. 22 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing.
Identification of cell cycle-regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors [ChIP-seq]
GEO Series GSE52098. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
U2OS_p53KO_Metabolomics_Timecourse
<p>We used mass spectrometry-based metabolite profiling to identify targetable differences in the metabolic states of U2OS and U2OS<em><sup>p53KO </sup></em>cells, both at steady-state and following etoposide exposure. Overall, we quantified the abundance of 463 metabolites.</p> <p>For sample collection, cells were seeded on 6-well plates at 200,000 cells per well. After adherence overnight, cells were treated with DMSO, 5 µM etoposide, or 31.6 µM etoposide. At the indicated timepoints, samples were collected in parallel for metabolite extraction or protein quantification. For total protein quantification, cells were trypsinized and pelleted. Pellets were lysed using SDS lysis buffer and quantified using a BCA assay. For extraction of metabolites, growth media was removed, and cells were washed 2 times with ice-cold PBS. With the 6-well plate on dry ice, cells were submerged in 500 µL 80% MeOH. Samples were then incubated at -80°C for 15 minutes. Cell scrapers were used to harvest each sample, and sample wells were washed with an additional 300 µL of 80% MeOH. Samples were vortexed at 4°C for 10 minutes and then centrifuged at top speed for 10 minutes at 4°C. Supernatant was transferred to a new tube and samples were dried using a speed vac. Dried pellets were resuspended in 100 µL of water and vortexed for 10 minutes at 4°C. Samples were then spun for 10 minutes at top speed at 4°C, andsupernatant from each sample was transferred to an LC-MS vial. A QExactive Plus Quadrupole Orbitrap Mass Spectrometer equipped with a HESI II probe (Thermo Fisher Scientific) was then used to perform Mass Spectrometry. Metabolites were quantified by integrating peaks in TraceFinder 5.1 (Thermo Fisher Scientific). Mass tolerance was set to 5 ppm and expected retention times were benchmarked using an in-house library of chemical standards. Raw ion counts were normalized to the total protein amount, as quantified using BCA. Fold-change and significance was determined using a custom MATLAB script. </p>
Genome-wide maps of ERbeta binding sites in U2OS cells
GEO Series GSE21770. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Gene expression analysis of SRBD1-deficient U2OS cells
GEO Series GSE283162. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Chromatin status and transcriptomics of HEK293, U2OS, HepG2 and K562
GEO Series GSE139190. Homo sapiens. 28 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Real-time quantitative PCR analysis of extracellular vesicle miRNA from human U2OS cells culture medium [HRH1]
GEO Series GSE270080. Homo sapiens. 20 samples. Type: Expression profiling by RT-PCR.
RNA-Seq profiles of pancreatic adenocarcinoma PANC-1 and osteosarcoma U2OS cells with Pin1 knocking down
GEO Series GSE224502. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
Nacent transcription profiling of cell-cycle synchronised U2OS cells using SLAM-seq
GEO Series GSE196277. Homo sapiens. 15 samples. Type: Other.
Transcriptome analysis of total RNA in human osteosarcoma cell line U2OS before and after inhibition of zinc finger protein ZNF768
GEO Series GSE111881. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
RNA sequencing of AP1M1 KO HEK293 and U2OS
GEO Series GSE280430. Homo sapiens. 32 samples. Type: Expression profiling by high throughput sequencing.
RFX7-regulated transcriptome in U2OS
GEO Series GSE162163. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.