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691 results for “Vegetation Data”

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zenodo44/100

Submerged aquatic vegetation and nitrogen retention data from 2012 to 2017 in lake Saint-Pierre, Saint Lawrence River

<p>Here we provide seven datasets that describes plant biomass (2012 to 2016), environmental variables and nitrogen retention time series (2012 to 2016) in a submerged aquatic vegetation (SAV) meadow at the confluence of two agricultural tributaries (Saint-Fran&ccedil;ois and Yamaska) with the St. Lawrence River in southern Lake Saint-Pierre.</p> <p>Version 2 adds the dataset 6 and 7.</p> <p>The seven datasets are:</p> <p>1) Growing season (June 21 to September 22) daily environmental variables (water level, water temperature, light, tributaries input, and SAV biomass indicator)</p> <p>2) Mean SAV biomass measured using rake or quadrat samples in the meadow</p> <p>3) Modelled daily nitrate tributary inputs to the SAV bed</p> <p>4) Daily nitrate output to the SAV bed estimated from a sensor</p> <p>5) Daily nitrate budget</p> <p>6) Hourly nitrate output to the SAV bed and signal decomposition from ensemble empirical mode decomposition (EEMD)</p> <p>7) Hourly dissolved oxygen and gas exchange velocities at the SAV bed outflow for 2016</p> <p>Original data comes from Lake Saint-Pierre, either from publicly available government agencies data, from a project led by the Groupe de recherche interuniversitaire en limnologie (GRIL, 2012-2015) and by Morgan Botrel Ph.D. candidate (2016-2017, Universit&eacute; de Montr&eacute;al) or from Christiane Hudon (ECCC). Data were created for an article on climate-driven variation in nitrogen retention, led by Morgan Botrel and supervisor Roxane Maranger, with Christiane Hudon, James B. Heffernan and Pascale M. Biron (https://doi.org/10.1029/2022WR032678).</p>

opencc-by-4.0Apr 2022View details →
zenodo44/100

Data from: Cross-scale regulation of seasonal microclimate by vegetation and snow in the Arctic tundra

<p>The zip file contains data and code from the analyses for von Oppen et al. (2022) <em>Global Change Biology</em>&nbsp;(<a href="https://doi.org/10.1111/gcb.16426">https://doi.org/10.1111/gcb.16426</a>). Access through the provided R project file (e.g. with RStudio) is recommended for seamless running of the code.&nbsp;Please see the paper (link below) for methodological details, results and discussion, and the ReadMe included in the archive for further detail and usage policy.</p>

opencc-by-4.0Jan 2022View details →
zenodo44/100

Model codes and simulation data for "Modeling demographic-driven vegetation dynamics and ecosystem biogeochemical cycling in NASA GISS's Earth system model (ModelE-BiomeE v.1.0)"

<p>ModelE-BiomeE v1.0 model codes and data This folder contains the simulation data and model codes that were used in the paper &lsquo;Modeling demographic-driven vegetation dynamics and ecosystem biogeochemical cycling in NASA GISS&rsquo;s Earth system model (ModelE-BiomeE v.1.0)&rsquo; (https://doi.org/10.5194/gmd-2022-72). We included the data simulated by ModelE-BiomeE v.1.0 with settings of full demography (folder FullDemography) and single cohort (folder SingleCohort), and initial settings of land grids and vegetation data (folder GlobalVegetation). The codes include the full ModelE 2.1, module BiomeE files in ModelE, and the standalone BiomeE. In the folder FullDemography, we have 4 netcdf files for global output and 25 files for single grids output. The files &lsquo;FullDM_2588_JAN.nc&rsquo; and &lsquo;FullDM_2588_JUL.nc&rsquo; are the original model output of January and July in the year 2588. The file &lsquo;FullDM_2588_Annual.nc&rsquo; is the yearly summary of model simulations. The file &lsquo;FullDM_Selected.nc&rsquo; is an annual summary of 588 years of model simulation only with selected variables. The csv files are for single grids output at the time steps of daily and yearly. The last digit 1~8 represents the sites of &#39;BNC&#39;,&#39;MNT&#39;,&#39;HF&#39;,&#39;OKR&#39;,&#39;KZ&#39;,&#39;SV&#39;,&#39;WGK&#39;,&#39;TPJ&#39;, respectively (Table 1). Table 1 Site ID and file number [&#39;BNC&#39;, &nbsp;&#39;MNT&#39;, &nbsp; &#39;HF&#39;, &nbsp;&#39;OKR&#39;, &nbsp;&#39;KZ&#39;, &nbsp; &#39;SV&#39;, &nbsp; &#39;WGK&#39;, &nbsp;&#39;TPJ&#39;] [&#39;8991&#39;, &#39;8992&#39;, &#39;8993&#39;, &#39;8994&#39;, &#39;8995&#39;, &#39;8996&#39;, &#39;8997&#39;, &#39;8998&#39;] [&#39;8971&#39;, &#39;8972&#39;, &#39;8973&#39;, &#39;8974&#39;, &#39;8975&#39;, &#39;8976&#39;, &#39;8977&#39;, &#39;8978&#39;] [&#39;8961&#39;, &#39;8962&#39;, &#39;8963&#39;, &#39;8974&#39;, &#39;8965&#39;, &#39;8966&#39;, &#39;8977&#39;, &#39;8968&#39;] Please refer to Table 2 in the paper for the detail of these 8 sites. &lsquo;DailyLAIGPP.csv&rsquo; is a summary of all &lsquo;DailyEcosystem&rsquo; files with LAI and GPP data. We included the Python scripts that can be used to generate the figures in out paper (Plotting-BiomeE-MsTMIP.py, Plotting-Scatter-Comparison.py, PlottingBiomeEMaps.py, and PlottingGridOutput.py). For the convenience of readers (in reproducing our figures), we included the summary of reanalysis of the data from observations and MsTMIP in folder &lsquo;Sum-Obs-Simu&rsquo;. Please refer to the original sources listed in our paper for the detail of these data.</p>

opencc-by-4.0Sep 2022View details →
zenodo44/100

Oregon Wolfe Barley (Hordeum vulgare) Informative & Spectacular Subset (ISS) vegetative stage growth data

<p>Oregon Wolfe Barley Informative &amp; Spectacular Subset (ISS) was raised at the Ag Alumni Seed Phenotyping Facility (AAPF) at Purdue University (West Lafayette, Indiana, USA) for 42 days. There were 18 genotypes, with two replicates for each genotype (total plants: 36). AAPF is a controlled environment high-throughput phenotyping facility with automated imaging and irrigation systems. A virtual tour of AAPF can be found at&nbsp;<a href="https://ag.purdue.edu/aapf/virtual-tour.html">https://ag.purdue.edu/aapf/virtual-tour.html</a>.</p> <p>Seeds were sown in a 6 L pot with 2.8 L of Profile Porous Ceramic Greens Grade and Berger BM6 each with 10g of Osmocote. Five hundred ml of Turface was laid on top of each pot to avoid effect of algae for RGB data derivation. The growth temperature in the chamber was 72/68 degrees Fahrenheit day/night. Relative humidity was set at 60%. Lighting was 16 h day/8 h night.</p> <p>Plants were imaged with RGB camera from one top and 12 side views three times a week, ranging between 10 days from planting (equivalent to sowing, Dfp) to 42 Dfp. Ground reference data of plant height and tiller count were measured twice a week.&nbsp;</p> <p>&nbsp;</p> <p>RGB imaging data were stored in &ldquo;OWB_RGB.xlsx&rdquo;. Datasheet &ldquo;Information&rdquo; describes the variables in datasheets for top view, side average view and every side view.</p> <p>&nbsp;</p> <p>Ground reference data for plant height and tiller count were stored in &ldquo;OWB_ground_reference.xlsx&rdquo;. Datasheet &ldquo;Information&rdquo; describes the variables in datasheet &ldquo;Data&rdquo;.</p>

opencc-by-4.0Apr 2024View details →
zenodo44/100

Dense vegetation hinders sediment transport towards saltmarsh interiors - Supporting data and source code (Part IV: Post-processing)

<p>This is Part IV&nbsp;of the supporting data and source code for the paper entitled "Dense vegetation hinders sediment transport towards saltmarsh interiors", submitted to&nbsp;<em>Limnology and Oceanography Letters.</em>&nbsp;It contains all input and output files for the post-processing of all model results.</p> <p>To be able to run the scripts as is, the folder structure should be as follows:</p> <p>Runs&nbsp;(includes all model run folders from Part II and Part III)<br>Post/Basic/Channels<br>Post/Basic/Cross_sections<br>Post/Basic/Integrals<br>Post/Basic/Median_neighborhood_analysis (includes all unzipped MNA_TIGER_XX.zip folders)<br>Post/Basic/Skeleton_clean<br>Post/Basic/Skeleton_final<br>Post/Basic/Skeleton_raw<br>Post/Basic/Unchanneled_path_length<br>Post/Basic/Watersheds<br>Post/Basic/Scenarios.txt<br>Post/Basic/TIGER_2km_5m.slf<br>Post/Paper_1/Erosion-deposition<br>Post/Paper_1/Fluxes<br>Post/Paper_1/Profiles<br>Post/Paper_1/Std</p>

opencc-by-4.0Dec 2022View details →
zenodo44/100

Urban Vegetation Data - Canopy Height Model (Brussels Capital Region, 2021)

<p>This GIS dataset was created for the following scientific publication, as part of the EU-funded&nbsp;<a href="https://coolschools.eu/">Cool Schools</a>&nbsp;research project (under Grant Agreement No. 101003758) : Gallez, E., Canters, F., Gadeyne, S., &amp; Bar&oacute;, F. (2024).&nbsp;<a href="https://www.sciencedirect.com/science/article/pii/S2212041624000846?via%3Dihub">A multi-indicator distributive justice approach to assess school-related green infrastructure benefits in Brussels - ScienceDirect</a>. Ecosystem Services, 70, 101677. https://doi.org/10.1016/j.ecoser.2024.101677.&nbsp;</p> <p><em>Very-High Resolution Canopy Height Model (resolution : 25cm), distinguishing between 4 vegetation types (trees, high shrubs, low shrubs and grass) in the Brussels Capital Region.</em></p> <p><em>Coordinate system : Lambert_Belge_72.</em></p> <p><em>The CHM was built on </em><em>:</em></p> <ul> <li><em>VHR aerial orthophotos (visible RGB and NIR) (&ldquo;UrbIS-Ortho N-S, 2021&rdquo;) for the Brussels Capital Region, of 5x5cm resolution&nbsp; Source: Paradigm. (2021). UrbIS-Ortho N-S. Paradigm.Brussels. <a href="https://datastore.brussels/web/data/dataset/fec72767-d6b6-41b9-a767-616df2779aae#access">https://datastore.brussels/web/urbisdownload</a>. &nbsp;and;</em></li> <li><em>digital terrain models (DSM and DTM) of 50x50cm, captured on 22/09/2021. Paradigm.Brussels. </em><em>Source: Paradigm. (2021). DSM / DTM. Paradigm.Brussels. <a href="https://datastore.brussels/web/data/dataset/1d7bd49d-fe83-4388-af85-6f5dc8ec7909#access">https://datastore.brussels/web/urbisdownload.</a></em></li> </ul> <p><em>Both the orthophotos and digital terrain models were resampled to a 25x25cm resolution, using a bilinear interpolation method. </em></p> <p><em>The Canopy Height Model was then created by selecting NDVI values of 0.2 and higher, - a commonly used threshold value to distinguish vegetated land from built land (Hashim et al., 2019) -, </em><em>and vegetation height thresholds of &lt; 0.5m (for grass), 0.5 - 2m (for low shrubs), 2 - 5m (for high shrubs), and &gt; 5m (for trees) (Derkzen et al., 2015; Sankey et al., 2018). </em><em>Green roofs were excluded.The CHM raster was then converted to polygon features.&nbsp;</em></p> <p><em>Classification :</em></p> <ul> <li><em>From 0 to 0.5 m (nDSM value) : gridcode 1 = </em><em>grass</em></li> <li><em>From 0.5 to 2 m (nDSM value): gridcode 2 =&nbsp;</em><em>low shrubs</em></li> <li><em>From 2 to 5 m (nDSM value): gridcode 3 =</em><em> high shrubs</em></li> <li><em>From 5 to 113.96 m (nDSM value): gridcode 4 = </em><em>trees</em></li> </ul>

opencc-by-4.0Sep 2024View details →
zenodo44/100

Tower-based solar-induced fluorescence and vegetation index data for Southern Old Black Spruce forest

<p>Data includes remote sensing products from PhotoSpec (a scanning spectrometer) from September 2019-December 2020 at the Southern Old Black Spruce site in Saskatchewan Canada. We provide half-hourly averaged vegetation indices (NIRv, NDVI, PRI, CCI) and solar-induced fluorescence (SIF) and &nbsp;for a stand-representative mix of black spruce and larch. Additionally, we provide photosynthetically active radiation (PAR), absorbed photosynthetically active radiation (APAR), and the escape fraction of SIF photons (fesc). Version 2 also provides half-hourly averaged SIF and SIFrelative for black spruce (evergreen)&nbsp;and larch (deciduous) separately.&nbsp;</p>

opencc-by-4.0Jan 2022View details →
zenodo44/100

Satellite soil and vegetation water content data capturing main terrestrial ecosystem changes

<p>I)SUMMARY</p> <p>This repository contains a harmonized database for the study of terrestrial ecosystem changes published in [Bueso et al., 2021]. It covers the period June 2010 - July 2020 and includes the following variables, which were harmonized to a common spatial scale of 25km and monthly temporal resolution and clustered as detailed in [Bueso et al., 2021]:</p> <p>- SM: soil moisture from SMOS-IC v2<br> - VOD: vegetation optical depth from SMOS-IC v2<br> - NDVI: Normalized Vegetation Difference Index from MODIS, product MOD13Q1 v6<br> - PREC: Rainfall from PERSIANN-CDR v2.2.</p> <p>Additionally, land cover information from&nbsp;MODIS MCD12Q1 collection 6 for years 2011 and 2019 is provided for each cluster.</p> <p>II) CONTACT</p> <p>For questions, please e-mail Diego Bueso at diego.bueso@uv.es</p> <p>III) DATABASE</p> <p>We provide the maps of identified clusters by quantile of SM and VOD and the code to generate&nbsp;Figs 1 and 2 of supplementary material in [Bueso et al., 2023]. We then provide for each identified cluster .mat files containing the variables described above. Further details are in the readme.txt file</p> <p>IV) CITE</p> <p>To properly acknowledge the dataset we kindly encourage users to (1) cite the DOI&nbsp;as an in-text citation and/or in the data acknowledgements in any publication and (2) reference the following publication:&nbsp;</p> <p>D. Bueso, M. Piles, P. Ciais, J-P. Wigneron, &Aacute;. Moreno-Mart&iacute;nez, G. Camps-Valls, &quot;Soil and vegetation water content identify the main terrestrial ecosystem changes&quot;, National Science Review, 2023, <a href="https://doi.org/10.1093/nsr/nwad026">https://doi.org/10.1093/nsr/nwad026</a>&nbsp;</p>

opencc-by-4.0Feb 2023View details →
zenodo44/100

Data from: Vegetation change in acidic dry grasslands in Moravia (Czech Republic) over three decades: slow decrease in habitat quality after grazing cessation

<p>This dataset contains the original data used in the article:</p> <p>Har&aacute;sek M., Klinkovsk&aacute; K. &amp; Chytr&yacute; M. (2023)&nbsp;Vegetation change in acidic dry grasslands in Moravia (Czech Republic) over three decades: slow decrease in habitat quality after grazing cessation.&nbsp;<em>Applied Vegetation Science</em>, 26, e12726.&nbsp;https://doi.org/10.1111/avsc.12726</p> <p>The data&nbsp;contain&nbsp;plant species composition data from resurveyed vegetation plots in southwestern and central Moravia (Czech Republic). The plots were first surveyed by Milan Chytr&yacute; in 1986&ndash;1991 (&ldquo;old plots&rdquo;) and resurveyed by Martin Har&aacute;sek, under the supervision of Milan Chytr&yacute;, in 2018&ndash;2019 (&ldquo;new plots&rdquo;).</p> <p>Of the old plots, 86 were sampled between 26 June and 16 September and 8 in May. Their size ranged from 5 to 49 m<sup>2</sup> (mean 33 m<sup>2</sup>). These plots were subjectively selected at different sites to document maximum variation in species composition and environmental conditions of the grasslands and heathlands studied. In each plot, all vascular plant species were recorded, and their covers were estimated using the nine-grade Braun-Blanquet scale (van der Maarel 1979). Plot locations were recorded in the form of text descriptions. Geographic coordinates of approximate location were added for each plot prior to the resurvey by the original surveyor using georeferenced aerial photographs and various information recorded in the field during the first survey, including slope, aspect and elevation. Location uncertainty (mean = 139 m) was indicated as the possible distance of the actual location from the given coordinates.</p> <p>The resurvey was conducted between 4 June and 16 August. Care was taken to select the most likely location of the original plot based on the coordinates of the approximate location, the original site description, and the occurrence of the species recorded during the first survey. New plots always had the same plot size as in the original sampling. Each old plot was resurveyed using 1&ndash;3 new plots depending on the uncertainty of the location of the old plot. A total of 94 old plots were resurveyed at 47 sites with 153 new plots. Of these, 71 old plots at 32 sites were in current protected areas, while 23 old plots at 15 sites were outside protected areas. All new plots were located using GPS with a location uncertainty of approximately 5 m.</p> <p>For each old plot resurveyed with more than one new plot, the most similar new plot (based on Bray-Curtis dissimilarity in species composition) was selected, resulting in a dataset of 94 old and 94 new plots (&ldquo;best-fit dataset&rdquo;). To test the robustness of the results, we created another dataset (&ldquo;validation dataset&rdquo;) that included the least similar of the corresponding new plots for each old plot. This dataset also included the 94 old and 94 new plots. If the old plot was resurveyed using a single new plot, that new plot was included in both the best-fit and validation datasets.</p> <p>The header data structure follows that of the ReSurveyEurope Database (<a href="http://euroveg.org/eva-database-re-survey-europe">http://euroveg.org/eva-database-re-survey-europe</a>). In addition, fields are added to indicate whether the new plot was used in the best-fit dataset (Best_fit) or the validation dataset (Validation). The information about location within or outside the protected area is given in the field Protection.</p> <p>The data on species composition and environmental variables are provided in two formats:</p> <ul> <li>Turboveg 2 database (see&nbsp;<a href="https://www.synbiosys.alterra.nl/turboveg/">https://www.synbiosys.alterra.nl/turboveg/</a>) &ndash; file&nbsp;<strong>TurbovegDbBackup_SW_moravia_acidgrass.zip</strong>. For using this dataset in Turboveg, the database dictionary (TurbovegDdBackup_Default dictionary.zip) and the species list (TurbovegSlBackup_Czechia_slovakia_2015.zip) must be installed.</li> <li>Three TXT files with columns separated by tabs: <ul> <li><strong>SW_moravia_acidgrass_species.txt</strong>&nbsp;contains the percentage covers of plant species in the plots, which are mid-values for cover-abundance categories of the Braun-Blanquet scale. Plant nomenclature was harmonised according to Danihelka et al. (2012).</li> <li><strong>SW_moravia_acidgrass _head.txt</strong>&nbsp;contains information on the number of species in each plot (number_species), the number, proportion and relative cover of threatened species (IUCN categories CR, EN, VU, NT, columns CR_NT_number, CR_NT_perc_number and CR_NT_perc_cover), alien species (alien_number, alien_perc_number, alien_perc_cover), species characteristic of dry grasslands (TH_number, TH_perc_number, TH_perc_cover), sand and rock-outcrop grasslands (TF_number, TF_perc_number, TF_perc_cover), mesotrophic grasslands (TD_number, TD_perc_number, TD_perc_cover) and herbaceous ruderal vegetation (XA_XC_number, XA_XC _perc_number, XA_XC _perc_cover) and unweighted means of Ellenberg-type indicator values for light (light), temperature (temperature), moisture (moisture), soil reaction (reaction) nutrients (nutrients) and salinity (salinity) used to test changes in these variables through time.</li> <li><strong>SW_moravia_life_forms.txt </strong>contains information about the assignment of individual species to the life form, which was used to analyse changes in frequency and cover of the life forms.</li> </ul> </li> </ul> <p>These data are also stored in the Czech National Phytosociological Database (Chytr&yacute; &amp; Rafajov&aacute;&nbsp; 2003;&nbsp;<a href="https://botzool.cz/vegsci/phytosociologicalDb">https://botzool.cz/vegsci/phytosociologicalDb</a>) and the ReSurveyEurope database (Knollov&aacute; et al. 2023; <a href="http://euroveg.org/eva-database-re-survey-europe">http://euroveg.org/eva-database-re-survey-europe</a>).</p>

opencc-by-4.0Mar 2023View details →
zenodo44/100

Data from: Davison et al. (2023) Vegetation structure from LiDAR explains the local richness of birds across Denmark

<p>Environmental and biodiversity data associated with the article: Davison et al. (2023) <strong>Vegetation structure from LiDAR explains the local richness of birds across Denmark</strong>, <em>Journal of Animal Ecology</em>.</p> <p>Bird richness and abundance at points across Denmark, with matched land cover and LiDAR structural data. Bird observations are a subset of the Common Bird Monitoring programme (DOF &ndash; Birdlife Denmark) and pooled from summer counts of 2014, 15, and 16. Bird functional group assignments and environmental data are from open access data sets (see below).</p> <table> <tbody> <tr> <td>Data source</td> <td>Reference</td> </tr> <tr> <td>Danish Common Bird Monitoring programme</td> <td>Eskildsen, D. P., Vikstr&oslash;m, T., &amp; J&oslash;rgensen, M. F. (2021). Overv&aring;gning af de almindelige fuglearter i Danmark 1975-2020. Dansk Ornitologisk Forening.</td> </tr> <tr> <td>EcoDes-DK15 LiDAR data set of Denmark</td> <td>Assmann, J. J., Moeslund, J. E., Treier, U. A., &amp; Normand, S. (2022). EcoDes-DK15: high-resolution ecological descriptors of vegetation and terrain derived from Denmark&rsquo;s national airborne laser scanning data set. Earth System Science Data, 14(2), 823&ndash;844. https://doi.org/10.5194/essd-14-823-2022</td> </tr> <tr> <td>Pan-European land cover map of the year 2015&nbsp;</td> <td>Pflugmacher, D., Rabe, A., Peters, M., &amp; Hostert, P. (2019). Mapping pan-European land cover using Landsat spectral-temporal metrics and the European LUCAS survey. Remote Sensing of Environment, 221, 583&ndash;595. https://doi.org/10.1016/j.rse.2018.12.001</td> </tr> <tr> <td>AVONET bird traits data</td> <td>Tobias, J. A., Sheard, C., Pigot, A. L., Devenish, A. J. M., Yang, J., Neate-Clegg, M. H. C., Alioravainen, N., Weeks, T. L., Barber, R. A., Walkden, P. A., MacGregor, H. E. A., Jones, S. E. I., Vincent, C., Phillips, A. G., Marples, N. M., Monta&ntilde;o-Centellas, F., Leandro-Silva, V., Claramunt, S., Darski, B., &hellip; Schleunning, M. (2022). AVONET: morphological, ecological and geographical data for all birds. Ecology Letters, 25(3), 581&ndash;597. https://doi.org/10.1111/ele.13898</td> </tr> <tr> <td>Birds of the Palearctic - original source of trait data&nbsp;</td> <td>Cramp, S. (2006). The birds of the western Palearctic interactive. Oxford University Press and BirdGuides.</td> </tr> <tr> <td>Life-history characteristics of European birds - trait database</td> <td>Storchov&aacute;, L., &amp; Hoř&aacute;k, D. (2018). Life-history characteristics of European birds. Global Ecology and Biogeography, 27(4), 400&ndash;406. https://doi.org/10.1111/geb.12709</td> </tr> </tbody> </table>

opencc-by-4.0Dec 2022View details →
edi44/100

Data from "Grassland woody plant management rapidly changes woody vegetation persistence and abiotic habitat conditions but not herbaceous community composition"

These files contain microhabitat, soil, vegetation structure, and woody plant species data used in the paper "Grassland woody plant management rapidly changes woody vegetation persistence and abiotic habitat conditions but not herbaceous community composition". The project was conducted at seven publicly accessible remnant (i.e., unplowed or old-growth) tallgrass prairie within 100 miles of Madison, Wisconsin, United States starting in the 2020 growing season and commencing following the 2022 growing season. The goal was to assess the initial effects of different management interventions on woody vegetation persistence, abiotic habitat conditions, and herbaceous community composition, including physical and chemical management interventions and their combination.

openCC (other)Jun 2024View details →
edi44/100

Stratified Vegetation Survey Data from an Experimental Mangrove Site in Port Aransas, Texas: 2019

We visually surveyed the vegetation at the front and back of ten large experimental plots located in a large stand of mangroves near Port Aransas, Texas on November 28th, 2019. The ten experimental plots had been thinned using a 3 x 3 m grid in 2012 to create a gradient in plot-level mangrove cover from 0 to 100 percent. We estimated percent cover in six “mangrove” and six “cleared” cells at the front and back of each plot.

openCC0Jul 2021View details →
edi44/100

Weekly Normalized Difference Vegetation Index (NDVI) data from Roche Moutonnee, Toolik Field Station, Imnavait, and Sag river DOT sites, in the northern foothills of the Brooks Range, Alaska, summer 2010-2014.

Weekly Normalized Difference Vegetation Index (NDVI) data from Roche Moutonnee, Toolik Lake Field Station, Imnavait Creek and Sagavanirktok River DOT sites in the northern foothills of the Brooks Range, Alaska. Located south of the Arctic LTER and Toolik Lake Field Station. Data collected from May to July 2010-2014. Methods and further data published in Ecography by Rich, et al. 2013.

openOpenDec 2015View details →
edi44/100

Baltimore Ecosystem Study: Riparian vegetation data - 1 of 11 - 1999 and 2004 trees

This is one of 11 datasets generated in a study of riparian vegetation in the Baltimore Ecosystem Study from 1999-2004. Comparisons of vegetation between the rural/suburban (upper) and urban (lower) sections of the watershed show distinct patterns across an urban to rural gradient. In the lower, more urban section of the watershed, wetland tree species are either absent or occur as small stems while upland species are abundant, in mixed sizes. A comparison of the number of wetland and upland species in the mostly urbanized Gwynns Falls riparian zone with non-urbanized Piedmont floodplains throughout Maryland shows approximately twice as many upland species in the urban floodplain than in non-urbanized floodplains. The majority of shrubs in riparian zones through the Gwynns Falls are upland species. For herbaceous species, frequencies of upland and wetland species are about equal in the upper and middle regions of the watershed, but upland species are more common in the more urban lower floodplains by a factor of greater than two.

openCC (other)Feb 2016View details →
edi44/100

Baltimore Ecosystem Study: Riparian vegetation data - 2 of 11 -1999_plot_and_2004_transect_locations

This is one of 11 datasets generated in a study of riparian vegetation in the Baltimore Ecosystem Study from 1999-2004. Comparisons of vegetation between the rural/suburban (upper) and urban (lower) sections of the watershed show distinct patterns across an urban to rural gradient. In the lower, more urban section of the watershed, wetland tree species are either absent or occur as small stems while upland species are abundant, in mixed sizes. A comparison of the number of wetland and upland species in the mostly urbanized Gwynns Falls riparian zone with non-urbanized Piedmont floodplains throughout Maryland shows approximately twice as many upland species in the urban floodplain than in non-urbanized floodplains. The majority of shrubs in riparian zones through the Gwynns Falls are upland species. For herbaceous species, frequencies of upland and wetland species are about equal in the upper and middle regions of the watershed, but upland species are more common in the more urban lower floodplains by a factor of greater than two.

openCC (other)Feb 2016View details →
edi44/100

Baltimore Ecosystem Study: Riparian vegetation data - 3 of 11 - 1999 riparian herb data

This is one of 11 datasets generated in a study of riparian vegetation in the Baltimore Ecosystem Study from 1999-2004. Comparisons of vegetation between the rural/suburban (upper) and urban (lower) sections of the watershed show distinct patterns across an urban to rural gradient. In the lower, more urban section of the watershed, wetland tree species are either absent or occur as small stems while upland species are abundant, in mixed sizes. A comparison of the number of wetland and upland species in the mostly urbanized Gwynns Falls riparian zone with non-urbanized Piedmont floodplains throughout Maryland shows approximately twice as many upland species in the urban floodplain than in non-urbanized floodplains. The majority of shrubs in riparian zones through the Gwynns Falls are upland species. For herbaceous species, frequencies of upland and wetland species are about equal in the upper and middle regions of the watershed, but upland species are more common in the more urban lower floodplains by a factor of greater than two.

openCC (other)Feb 2016View details →
edi44/100

Baltimore Ecosystem Study: Riparian vegetation data - 4 of 11 - 1999 riparian shrub data

This is one of 11 datasets generated in a study of riparian vegetation in the Baltimore Ecosystem Study from 1999-2004. Comparisons of vegetation between the rural/suburban (upper) and urban (lower) sections of the watershed show distinct patterns across an urban to rural gradient. In the lower, more urban section of the watershed, wetland tree species are either absent or occur as small stems while upland species are abundant, in mixed sizes. A comparison of the number of wetland and upland species in the mostly urbanized Gwynns Falls riparian zone with non-urbanized Piedmont floodplains throughout Maryland shows approximately twice as many upland species in the urban floodplain than in non-urbanized floodplains. The majority of shrubs in riparian zones through the Gwynns Falls are upland species. For herbaceous species, frequencies of upland and wetland species are about equal in the upper and middle regions of the watershed, but upland species are more common in the more urban lower floodplains by a factor of greater than two.

openCC (other)Feb 2016View details →
edi44/100

Baltimore Ecosystem Study: Riparian vegetation data - 5 of 11 - 1999 seedling data

This is one of 11 datasets generated in a study of riparian vegetation in the Baltimore Ecosystem Study from 1999-2004. Comparisons of vegetation between the rural/suburban (upper) and urban (lower) sections of the watershed show distinct patterns across an urban to rural gradient. In the lower, more urban section of the watershed, wetland tree species are either absent or occur as small stems while upland species are abundant, in mixed sizes. A comparison of the number of wetland and upland species in the mostly urbanized Gwynns Falls riparian zone with non-urbanized Piedmont floodplains throughout Maryland shows approximately twice as many upland species in the urban floodplain than in non-urbanized floodplains. The majority of shrubs in riparian zones through the Gwynns Falls are upland species. For herbaceous species, frequencies of upland and wetland species are about equal in the upper and middle regions of the watershed, but upland species are more common in the more urban lower floodplains by a factor of greater than two.

openCC (other)Feb 2016View details →
edi44/100

Baltimore Ecosystem Study: Riparian vegetation data - 6 of 11 - 1999 transect descriptions

This is one of 11 datasets generated in a study of riparian vegetation in the Baltimore Ecosystem Study from 1999-2004. Comparisons of vegetation between the rural/suburban (upper) and urban (lower) sections of the watershed show distinct patterns across an urban to rural gradient. In the lower, more urban section of the watershed, wetland tree species are either absent or occur as small stems while upland species are abundant, in mixed sizes. A comparison of the number of wetland and upland species in the mostly urbanized Gwynns Falls riparian zone with non-urbanized Piedmont floodplains throughout Maryland shows approximately twice as many upland species in the urban floodplain than in non-urbanized floodplains. The majority of shrubs in riparian zones through the Gwynns Falls are upland species. For herbaceous species, frequencies of upland and wetland species are about equal in the upper and middle regions of the watershed, but upland species are more common in the more urban lower floodplains by a factor of greater than two.

openCC (other)Feb 2016View details →
edi44/100

Baltimore Ecosystem Study: Riparian vegetation data - 7 of 11 - 2004 plot elevations

This is one of 11 datasets generated in a study of riparian vegetation in the Baltimore Ecosystem Study from 1999-2004. Comparisons of vegetation between the rural/suburban (upper) and urban (lower) sections of the watershed show distinct patterns across an urban to rural gradient. In the lower, more urban section of the watershed, wetland tree species are either absent or occur as small stems while upland species are abundant, in mixed sizes. A comparison of the number of wetland and upland species in the mostly urbanized Gwynns Falls riparian zone with non-urbanized Piedmont floodplains throughout Maryland shows approximately twice as many upland species in the urban floodplain than in non-urbanized floodplains. The majority of shrubs in riparian zones through the Gwynns Falls are upland species. For herbaceous species, frequencies of upland and wetland species are about equal in the upper and middle regions of the watershed, but upland species are more common in the more urban lower floodplains by a factor of greater than two.

openCC (other)Feb 2016View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record