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131 results for “Vouchering”
FIGURE. Phylogenetic tree of specimens on Poaceae and related host plants constructed by MP method based on ITS+28S regions of rDNA. Bootstrap values of MP and ML are followed by the Bayesian posterior probabilities (Bpp) on the nodes in the topology. Asterisk (*) represents bootstrap values or Bpp less than 50% in the topology. Sample data are shown with voucher specimen number or GenBank accession number, and host plant. Sequence data determined in this study are shown in color. Teliospore shapes are shown in each clade detected, and new species are shown by asterisk (*) on clades. 0, I: Spermogonial and aecial host genus. Asterisk (*) on host plants: Spermogonial and aecial host plants. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Phylogenetic tree of specimens on Poaceae and related host plants constructed by MP method based on ITS+28S regions of rDNA. Bootstrap values of MP and ML are followed by the Bayesian posterior probabilities (Bpp) on the nodes in the topology. Asterisk (*) represents bootstrap values or Bpp less than 50% in the topology. Sample data are shown with voucher specimen number or GenBank accession number, and host plant. Sequence data determined in this study are shown in color. Teliospore shapes are shown in each clade detected, and new species are shown by asterisk (*) on clades. 0, I: Spermogonial and aecial host genus. Asterisk (*) on host plants: Spermogonial and aecial host plants.
Integrative biodiversity inventories: characterizing lichen-forming fungal diversity in Glen Canyon National Recreation Area using DNA barcoding and vouchered specimens
<p>The Colorado River and its tributaries on the Colorado Plateau are home to unique desert river ecosystems and changing environmental conditions. Within this region, the Glen Canyon National Recreation Area (GCNRA) is comprised of rugged, high desert terrain and is managed by the United States National Parks Service as both a recreational and conservation area. Despite the ecological and economic importance of GCNRA, significant components of the ecological communities therein remain poorly characterized, including lichens. Accurately characterizing lichen-forming fungal diversity is challenging due to poorly known taxonomic groups, underexplored regions/habitats, and varying interpretations of morphological differences, including the recognition of environmentally modified forms. To better understand lichen diversity in GCNRA, we used an integrative taxonomic approach, incorporating both traditional morphology-based identification and information from the standard fungal DNA barcoding marker, the ITS, to compile a thorough inventory of lichen-forming fungi in Fifty-Mile Canyon. Vouchered lichen specimens were collected in 2019, and from these the ITS marker was sequenced. Candidate species-level lineages were delimited from family-level multiple sequence alignments using the Assemble Species by Automatic Partitioning web server. Specimens comprising DNA-based candidate species were then evaluated using traditional taxonomically diagnostic characters to link these, where possible, to currently described species. For Fifty-Mile Canyon, we document 100 putative species in 15 families, each represented by vouchered specimens, ITS sequence data, and photographic documentation. For comparison, a survey of historic records from GCNRA revealed a total of 124 documented lichen-forming fungal species throughout the NRA and adjacent land. Approximately 50% of the species documented in Fifty-Mile Canyon had not previously been found in GCNRA, and similar proportions of species diversity have been documented in GCNRA but not observed in our survey. We report three species new to North America – <em>Calogaya ferrugineoides</em> (H. Magn.) Arup, Froden & Sochting, <em>Endocarpon deserticola</em> T. Zhang, X. L. Wei & J. C. Wei and <em>Xanthocarpia ferrari</em> (Bagl.) Frödén, Arup & Søchting – verified using ITS sequencing data. In addition, <em>Circinaria squamulosa</em> sp. nov. is formally described here, currently known only from sandstone slabs in Fifty-Mile Canyon. However, the taxonomic identity of many of the candidate species from Fifty-Mile Canyon remained ambiguous at the species level, and some collections likely represent undescribed species-level lineages. Our results revealed unexpected, high species-level diversity of lichen-forming fungi at local scales and that overall lichen diversity across the entire GCNRA is likely vastly undercounted. These data – including DNA barcodes for the vast majority of lichen-forming fungi occurring in this canyon – provide an important resource that can be integrated into subsequent lichen biodiversity research in the southwestern United States and other semi-arid climates.</p>
Supplementary material 1 from: Gutiérrez EE, Helgen KM, McDonough MM, Bauer F, Hawkins MTR, Escobedo-Morales LA, Patterson BD, Maldonado JE (2017) A gene-tree test of the traditional taxonomy of American deer: the importance of voucher specimens, geographic data, and dense sampling. ZooKeys 697: 87-131. https://doi.org/10.3897/zookeys.697.15124
Gazetteer : Authors: Eliécer E. Gutiérrez, Kristofer M. Helgen, Molly M. McDonough, Franziska Bauer, Melissa T. R. Hawkins, Luis A. Escobedo-Morales, Bruce D. Patterson, Jesús E. Maldonado
Supplementary material 3 from: Gutiérrez EE, Helgen KM, McDonough MM, Bauer F, Hawkins MTR, Escobedo-Morales LA, Patterson BD, Maldonado JE (2017) A gene-tree test of the traditional taxonomy of American deer: the importance of voucher specimens, geographic data, and dense sampling. ZooKeys 697: 87-131. https://doi.org/10.3897/zookeys.697.15124
Supplementary information figure : Authors: Eliécer E. Gutiérrez, Kristofer M. Helgen, Molly M. McDonough, Franziska Bauer, Melissa T. R. Hawkins, Luis A. Escobedo-Morales, Bruce D. Patterson, Jesús E. Maldonado
Supplementary material 2 from: Gutiérrez EE, Helgen KM, McDonough MM, Bauer F, Hawkins MTR, Escobedo-Morales LA, Patterson BD, Maldonado JE (2017) A gene-tree test of the traditional taxonomy of American deer: the importance of voucher specimens, geographic data, and dense sampling. ZooKeys 697: 87-131. https://doi.org/10.3897/zookeys.697.15124
Name and DNA sequences of pairs of primers used for amplification and sequencing of the CYTB gene : Data type: molecular data
Subspecies and Distribution. M.l.leucogasterMilne-Edwards,1872—C&EChinaandNVietnam. M. l. rubex Thomas, 1916 — NE India (West Bengal); a record from Nepal is not supported by any voucher specimens and is not mapped here. in Vespertilionidae
Subspecies and Distribution. M.l.leucogasterMilne-Edwards,1872—C&EChinaandNVietnam. M. l. rubex Thomas, 1916 — NE India (West Bengal); a record from Nepal is not supported by any voucher specimens and is not mapped here.
Subspecies and Distribution. A.o.olrogiWilliams&Mares,1978—NWArgentina(WCCatamarcaProvince). A. o. roigi Mares & Braun, 1996 — NW & WC Argentina (E Catamarca, La Rioja, W Santiago del Estero, and San Luis provinces); records from Mendoza Province need confirmation based on voucher material. in Cricetidae
Subspecies and Distribution. A.o.olrogiWilliams&Mares,1978—NWArgentina(WCCatamarcaProvince). A. o. roigi Mares & Braun, 1996 — NW & WC Argentina (E Catamarca, La Rioja, W Santiago del Estero, and San Luis provinces); records from Mendoza Province need confirmation based on voucher material.
Subspecies and Distribution. P.m.macrotisPeters,1867—AruIs(Indo-nesia). P. m. epularius Ramsay, 1878 — New Guinea and Raja Ampat Is (Salawati). Also sightings and photographs in Australian Boigu Is, but voucher specimens are needed for confirmation. in Pteropodidae
Subspecies and Distribution. P.m.macrotisPeters,1867—AruIs(Indo-nesia). P. m. epularius Ramsay, 1878 — New Guinea and Raja Ampat Is (Salawati). Also sightings and photographs in Australian Boigu Is, but voucher specimens are needed for confirmation.
Distribution. Known from Gansu, Shaanxi, Sichuan, and Yunnan, China; distribution should be treated with caution because of its similarity with S. bedfordiae. Only voucher specimens from N & W Sichuan have been examined. in Soricidae
Distribution. Known from Gansu, Shaanxi, Sichuan, and Yunnan, China; distribution should be treated with caution because of its similarity with S. bedfordiae. Only voucher specimens from N & W Sichuan have been examined.
Distribution. Based on molecular vouchers it occurs in E Zambia, Malawi, and Tanzania; records from N Mozambique, Zimbabwe, and N South Africa lack genetic verification, but are included here. in Muridae
Distribution. Based on molecular vouchers it occurs in E Zambia, Malawi, and Tanzania; records from N Mozambique, Zimbabwe, and N South Africa lack genetic verification, but are included here.
FIGURES 8–9. Voucher specimens. 8, Dugdaleiella monticola male. 8a in New species of Dugdaleiella, gen. nov., Kozloviella, gen. nov., and Pfitzneriella Viette from upper elevation Andes of Ecuador and Peru (Lepidoptera: Hepialidae)
FIGURES 8–9. Voucher specimens. 8, Dugdaleiella monticola male. 8a, LT (ZMHB); 8b, Cotopaxi, Ecuador (CMNH); 8c, Volcán Chiles, Ecuador (CMNH); 8d, male, Volcán Chiles, Ecuador (CMNH). 9, Labial palpi (male unless otherwise specified), 9a, Kozloviella viazmenskyi sp. n.; 9b, Pfitzneriella antonkozlovi sp. n.; 9c, P. rawlinsi sp. n.; 9d, P. titarenkoi sp. n.; 9e, P. yuliyakovalevae sp. n.; 9f, P. yuliyakovalevae sp. n. (female); 9g, Dugdaleiella monticola. Photos: Jane Hyland (Fig. 8), John Grehan (Figs 9a–b, d–h), and Carlos Mielke (Fig. 9c). Scale 1 mm (when present).
FIGURES 1–7. Voucher specimens. 1, Kozloviella viazmenskyi gen. n in New species of Dugdaleiella, gen. nov., Kozloviella, gen. nov., and Pfitzneriella Viette from upper elevation Andes of Ecuador and Peru (Lepidoptera: Hepialidae)
FIGURES 1–7. Voucher specimens. 1, Kozloviella viazmenskyi gen. n., sp. n. male HT (CMNH). 1a, dorsal; 1b, ventral. 2, Pfitzneriella antonkozlovi sp. n. male HT (CMNH), 2a, dorsal; 2b, ventral. 3, P. olafi sp. n. male HT (MNHN), 3a, dorsal; 3b, ventral. 4, P. rawlinsi sp. n. male, 4a, HT dorsal (CMNH); 4b, PT dorsal; 4c, PT ventral (CGCM). 5, P. remota male HT dorsal (MNHN). 6, P. titarenkoi sp. n. male HT (CMNH), 6a, dorsal; 6b, ventral. 7, P. yuliyakovalevae sp. n. male HT (CMNH), 7a, dorsal; 7b, ventral. Female PT (CMNH); 7c, dorsal; 7d, ventral. Photos: Ernst Brockmann (Fig. 5), Jane Hyland (Fig. 4a), Anton Kozlov (Figs 1, 2, 6, 7), and Carlos Mielke (Figs 3, 4b, 4c).
PLATE 24 in A diatom voucher flora from selected southeast rivers (USA)
PLATE 24. Light micrographs of nitzschioid and surirelloid taxa. Fig. 1. Stenopterobia curvula. Fig. 2. Tryblionella hungarica. Figs 3–5. S. delicatissima. Figs 6–7. Bacillaria paradoxa. Fig. 8. Surirella sp.6 SESQA. Fig. 9. S. robusta. Figs 10–11. Surirella suecica. Figs 12–14. S. minuta. Figs 15–17. S. brebissonii. Figs 18–20. S. angusta. Fig. 21. S. tenera. Scale bars: 10 μm.
PLATE 21 in A diatom voucher flora from selected southeast rivers (USA)
PLATE 21. Light micrographs of asymmetric biraphid taxa. Figs 1–3. Gomphonema sphaerophorum. Figs 4–6. Gomphonema sp.41 SESQA. Figs 7–9. G. manubrium. Figs 10–11. Gomphosphenia lingulatiformis. Figs 12–14. Gomphonema olivaceoides var. hutchinsoniana. Figs 15–17. Gomphonema sp.33 SESQA. Figs 18–20. G. parvulum. Figs 21–23. Gomphonema sp.25 SESQA. Figs 24–25. Gomphosphenia stoermeri. Figs 26–29. Gomphonema reimeri. Figs 30–31. G. christensenii. Figs 32–34. G. mehleri. Fig. 35. Gomphoneis minuta. Scale bars: 10 μm.
PLATE 23 in A diatom voucher flora from selected southeast rivers (USA)
PLATE 23. Light micrographs of nitzschioid taxa. Fig. 1. Nitzschia acicularis. Figs 2–3. N. draveillensis. Fig. 4. N. subconfinis. Figs 5–6. N. filiformis. Figs 7–9. N. clausii. Figs 10–12. N. frustulum. Figs 13–15. N. fonticola. Fig. 16. N. brevissima. Figs 17–20. N. amphibia. Figs 21–23. Nitzschia sp.34 SESQA. Fig. 24. Nitzschia sp.29 SESQA. Figs 25–28. Nitzschia frustulum var. subsalina. Figs 29–31. Nitzschia soratensis. Figs 32–35. N. inconspicua. Figs 36–38. Nitzschia sp.7 SESQA. Figs 39–40. N. amphibioides. Figs 41–43. N. sinuata var. tabellaria. Figs 44–45. Denticula tenuis. Figs 46–47. N. sinuata var. delognei. Fig. 48. Simonsenia delognei. Figs 49–51. Denticula sp.1 SESQA. Figs 52–53. Tryblionella debilis. Figs 54–56. T. apiculata. Figs 57–58. T. levidensis. Scale bars: 10 μm.
PLATE 22 in A diatom voucher flora from selected southeast rivers (USA)
PLATE 22. Light micrographs of nitzschioid taxa. Fig. 1. Nitzschia recta. Figs 2–4. Nitzschia dissipata f. undulata. Figs 5–7. N. dissipata. Figs 8–10. N. dissipata var. media. Figs 11–13. Nitzschia sp.26 SESQA. Figs 14–16. N. sociabilis. Figs 17–19. N. palea var. debilis. Figs 20–22. N. montanestris. Figs 23–26. N. palea var. tenuirostris. Figs 27–30. N. palea. Figs 31–34. N. acicularioides. Figs 35–37. N. tenuis. Figs 38–40. N. linearis. Scale bars: 10 μm.
PLATE 20 in A diatom voucher flora from selected southeast rivers (USA)
PLATE 20. Light micrographs of asymmetric biraphid taxa. Figs 1–3. Gomphonema affine var. rhombicum. Figs 4–5. Gomphonema sp.9 SESQA. Figs 6–8. Gomphonema sp.35 SESQA. Fig. 9. G. acuminatum. Figs 10–11. G. coronatum. Figs 12–13. G. turgidum. Figs 14–15. G. truncatum. Fig. 16. G. turris. Figs 17–18. Gomphonema sp.11 SESQA. Figs 19–21. G. celatum. Figs 22–24. G. affine. Figs 25–26. Gomphonema sp.20 SESQA. Scale bars: 10 μm.
PLATE 19 in A diatom voucher flora from selected southeast rivers (USA)
PLATE 19. Light micrographs of asymmetric biraphid taxa. Figs 1–5. Delicata sp.1 SESQA. Fig. 6. Reimeria uniseriata. Figs 7–9. R. sinuata. Figs 10–12. Amphora copulata. Figs 13–15. A. pediculus. Figs 16–18. A. bicapitata. Fig. 19. Halamphora montana. Figs 20–23. Gomphonema caperatum. Figs 24–27. G. incognitum. Figs 28–31. G. louisiananum. Figs 32–34. Gomphonema sp.42 SESQA. Figs 35–38. G. kobayasii. Figs 39–43. Gomphonema sp.15 SESQA. Figs 44–48. G. sierrianum. Figs 49–52. Gomphonema sp.28 SESQA. Figs 53–55. Gomphonema sp.7 SESQA. Figs 56–59. Gomphonema sp.26 SESQA. Figs 60–62. Gomphonema sp.40 SESQA. Scale bars: 10 μm.
PLATE 18 in A diatom voucher flora from selected southeast rivers (USA)
PLATE 18. Light micrographs of asymmetric biraphid taxa. Figs 1–2. Cymbopleura apiculata. Figs 3–4. Encyonema leibleinii. Figs 5–6. E. triangulum. Figs 7–11. E. minuta var. pseudogracilis. Figs 12. E. hamsherae. Figs 13–15. E. minutum. Figs 16–18. E. pergracile. Figs 19–21. E. appalachianum. Figs 22–24. E. hebridiforme. Figs 25–30. E. lineolatum. Figs 31–34. Encyonopsis subminuta. Scale bars: 10 μm.
PLATE 10 in A diatom voucher flora from selected southeast rivers (USA)
PLATE 10. Light micrographs of symmetric biraphid taxa. Figs 1–4. Stauroneis gracilis. Fig. 5. S. acidoclinatopsis. Figs 6–7. Stauroneis limneticus. Fig. 8. S. pseudagrestis. Figs 9–10. S. smithii. Figs 11–12. S. thermicola f. lanceolata. Figs 13–15. S. thermicola. Figs 16–19. Stauroneis borrichii. Fig. 20. S. agrestis. Figs 21–24. S. smithii var. incisa. Figs 25–26. Parlibellus protracta. Figs 27–28. S. kriegeri. Fig. 29–30. Capartogramma crucicula. Fig. 31. Navicula sanctaecrucis. Fig. 32. Navicula sp.23 SESQA. Fig. 33. Prestauroneis integra. Scale bars: 10 μm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.