Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
574
datasets available to search
ShareScore release 0.9.0
Dataset results
574 results for “anchoring”
FIG. 6 in Multilocus phylogeny of Gryllus field crickets (Orthoptera: Gryllidae: Gryllinae) utilizing anchored hybrid enrichment
FIG. 6. Overview of in-group taxa relationships based on Astral gene-tree analysis, with quadripartition branch support values. The named Groups correspond to Weissman & Gray (2019).
AERA5-Asia: A long-term Asian precipitation dataset (0.1°, 1 hourly, 1951–2015, Asia) anchoring the ERA5-Land under the total volume control by APHRODITE (1999–2015)
<p>AERA5-Asia: A long-term Asian precipitation dataset (0.1°, 1 hourly, 1951–2015, Asia) is developed by organically combining the ERA5-Land dataset with high spatiotemporal resolutions and continuity and the APHRODITE dataset with high quality.</p> <p><strong>How to cite: Ma, Z., Xu, J., Ma, Y., Zhu, S., He, K., Zhang, S., Ma, W., Xu, X., 2022. AERA5-Asia: A long-term Asian precipitation dataset (0.1°, 1 hourly, 1951–2015, Asia) anchoring the ERA5-Land under the total volume control by APHRODITE. Bulletin of American Meteorological Society, 103 (4)., DOI: https://doi.org/10.1175/BAMS-D-20-0328.1.</strong></p> <p>Data Format: GeoTIFF</p> <p>Spatial Coverage: 60°E–150°E, 15°S–55°N, land.</p> <p>AERA5-Asia (0.1°/ hourly, 1951–1966, Asia) is available at <a href="https://doi.org/10.5281/zenodo.3609352">https://doi.org/</a><a href="https://doi.org/10.5281/zenodo.4266081">10.5281/zenodo.6367463</a></p> <p>AERA5-Asia (0.1°/ hourly, 1962–1981, Asia) is available at <a href="https://doi.org/10.5281/zenodo.3609352">https://doi.org/</a><a href="https://doi.org/10.5281/zenodo.4266081">10.5281/zenodo.6369796</a></p> <p>AERA5-Asia (0.1°/ hourly, 1982–1998, Asia) is available at <a href="https://doi.org/10.5281/zenodo.3609352">https://doi.org/</a><a href="https://doi.org/10.5281/zenodo.4266081">10.5281/zenodo.4266081</a></p>
Data from: Anchored phylogenomics improves the resolution of evolutionary relationships in the rapid radiation of Protea L.
PREMISE OF THE STUDY: Estimating phylogenetic relationships in relatively recent evolutionary radiations is challenging, especially if short branches associated with recent divergence result in multiple gene tree histories. We combine anchored enrichment next-generation sequencing with species tree analyses to produce a robust estimate of phylogenetic relationships in the genus Protea (Proteaceae), an iconic radiation in South Africa. METHODS: We sampled multiple individuals within 59 out of 112 species of Protea and 6 outgroup species for a total of 163 individuals, and obtained sequences for 498 low-copy, orthologous nuclear loci using anchored phylogenomics. We compare several approaches for building species trees, and explore gene tree–species tree discrepancies to determine whether poor phylogenetic resolution reflects a lack of informative sites, incomplete lineage sorting, or hybridization. KEY RESULTS: Phylogenetic estimates from species tree approaches are similar to one another and recover previously well-supported clades within Protea, in addition to providing well-supported phylogenetic hypotheses for previously poorly resolved intrageneric relationships. Individual gene trees are markedly different from one another and from species trees. Nonetheless, analyses indicate that differences among gene trees occur primarily concerning clades supported by short branches. CONCLUSIONS: Species tree methods using hundreds of nuclear loci provided strong support for many previously unresolved relationships in the radiation of the genus Protea. In cases where support for particular relationships remains low, these appear to arise from few informative sites and lack of information rather than strongly supported disagreement among gene trees.
Data from: Phylogeny of a cosmopolitan family of morphologically conserved trapdoor spiders (Mygalomorphae, Ctenizidae) using Anchored Hybrid Enrichment, with a description of the family, Halonoproctidae Pocock 1901
The mygalomorph family Ctenizidae has a world-wide distribution and currently contains nine genera and 135 species. However, the monophyly of this group has long been questioned on both morphological and molecular grounds. Here, we use Anchored Hybrid Enrichment (AHE) to gather hundreds of loci from across the genome for reconstructing the phylogenetic relationships among the nine genera and test the monophyly of the family. We also reconstruct the possible ancestral ranges of the most inclusive clade recovered. Using AHE, we generate a supermatrix of 565 loci and 115,209 bp for 27 individuals. For the first time, analyses using all nine genera produce results definitively establishing the non-monophyly of Ctenizidae. A lineage formed exclusively by representatives of South African Stasimopus was placed as the sister group to the remaining taxa in the tree, and the Mediterranean Cteniza and Cyrtocarenum were recovered with high support as sister to exemplars of Euctenizidae, Migidae, and Idiopidae. All the remaining genera—Bothriocyrtum, Conothele, Cyclocosmia, Hebestatis, Latouchia, and Ummidia—share a common ancestor. Based on these results, we formally elevate this clade to the level of family. Our results definitively establish both the non-monophyly of the Ctenizidae and non-validity of the subfamilies Ummidiinae and Ctenizinae. In order to establish the placement of the remaining three ctenizid genera, Cteniza, Cyrtocarenum, and Stasimopus, thorough analyses within the context of a complete mygalomorph phylogenetic framework are needed. We formally describe the family Halonoproctidae Pocock 1901 and infer that the family's most recent common ancestor was likely distributed in western North America and Asia.
Data from: Anchors and snorkels: heterochrony, development and form in functionally-constrained fossil crassatellid bivalves
New growth-rate estimates for nine species from three genera of New Zealand Crassatellidae (Mollusca; Bivalvia), combined with existing morphometric ontogenetic descriptions, allow identification of heterochronic processes in the evolution of these genera. Both paedomorphosis (progenesis and neoteny) and peramorphosis (hypermorphosis and acceleration) have occurred within the clade. Overall, morphological variability and response to environmental pressure in this non-siphonate group is restricted by the interplay of anatomical and life-habit constraints. Stability in the substrate, predator avoidance, sluggish burrowing speed and inability to escape by deep burial are suggested as key drivers of, or constraints on, morphological change. Two groups of shell characters are identified: heavy, armoured "anchors" and elongate "snorkels", which combine juvenile and adult traits in shells of different sizes and ages, produced by heterochronic variation in developmental timing. Anchors and snorkels both represent different 'solutions' to the problems of life as a non-siphonate, infaunal bivalve.
Data from: Monogenean anchor morphometry: systematic value, phylogenetic signal, and evolution
Background. Anchors are one of the important attachment appendages for monogenean parasites. Common descent and evolutionary processes have left their mark on anchor morphometry, in the form of patterns of shape and size variation useful for systematic and evolutionary studies. When combined with morphological and molecular data, analysis of anchor morphometry can potentially answer a wide range of biological questions. Materials and Methods. We used data from anchor morphometry, body size and morphology of 13 Ligophorus (Monogenea: Ancyrocephalidae) species infecting two marine mugilid (Teleostei: Mugilidae) fish hosts: Moolgarda buchanani (Bleeker) and Liza subviridis (Valenciennes) from Malaysia. Anchor shape and size data (n = 530) were generated using methods of geometric morphometrics. We used 28S rRNA, 18S rRNA, and ITS1 sequence data to infer a maximum likelihood phylogeny. We discriminated species using principal component and cluster analysis of shape data. Adams's Kmult was used to detect phylogenetic signal in anchor shape. Phylogeny-correlated size and shape changes were investigated using continuous character mapping and directional statistics, respectively. We assessed morphological constraints in anchor morphometry using phylogenetic regression of anchor shape against body size and anchor size. Anchor morphological integration was studied using partial least squares method. The association between copulatory organ morphology and anchor shape and size in phylomorphospace was used to test the Rohde-Hobbs hypothesis. We created monogeneaGM, a new R package that integrates analyses of monogenean anchor geometric morphometric data with morphological and phylogenetic data. Results. We discriminated 12 of the 13 Ligophorus species using anchor shape data. Significant phylogenetic signal was detected in anchor shape. Thus, we discovered new morphological characters based on anchor shaft shape, the length between the inner root point and the outer root point, and the length between the inner root point and the dent point. The species on M. buchanani evolved larger, more robust anchors; those on L. subviridis evolved smaller, more delicate anchors. Anchor shape and size were significantly correlated, suggesting constraints in anchor evolution. Tight integration between the root and the point compartments within anchors confirms the anchor as a single, fully integrated module. The correlation between male copulatory organ morphology and size with anchor shape was consistent with predictions from the Rohde-Hobbs hypothesis. Conclusions. Monogenean anchors are tightly integrated structures, and their shape variation correlates strongly with phylogeny, thus underscoring their value for systematic and evolutionary biology studies. Our MonogeneaGM R package provides tools for researchers to mine biological insights from geometric morphometric data of speciose monogenean genera.
Data from: Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life
Background: Despite considerable effort, progress in spider molecular systematics has lagged behind many other comparable arthropod groups, thereby hindering family-level resolution, classification, and testing of important macroevolutionary hypotheses. Recently, alternative targeted sequence capture techniques have provided molecular systematics a powerful tool for resolving relationships across the Tree of Life. One of these approaches, Anchored Hybrid Enrichment (AHE), is designed to recover hundreds of unique orthologous loci from across the genome, for resolving both shallow and deep-scale evolutionary relationships within non-model systems. Herein we present a modification of the AHE approach that expands its use for application in spiders, with a particular emphasis on the infraorder Mygalomorphae. Results: Our aim was to design a set of probes that effectively capture loci informative at a diversity of phylogenetic timescales. Following identification of putative arthropod-wide loci, we utilized homologous transcriptome sequences from 17 species across all spiders to identify exon boundaries. Conserved regions with variable flanking regions were then sought across the tick genome, three published araneomorph spider genomes, and raw genomic reads of two mygalomorph taxa. Following development of the 585 target loci in the Spider Probe Kit, we applied AHE across three taxonomic depths to evaluate performance: deep-level spider family relationships (33 taxa, 327 loci); family and generic relationships within the mygalomorph family Euctenizidae (25 taxa, 403 loci); and species relationships in the North American tarantula genus Aphonopelma (83 taxa, 581 loci). At the deepest level, all three major spider lineages (the Mesothelae, Mygalomorphae, and Araneomorphae) were supported with high bootstrap support. Strong support was also found throughout the Euctenizidae, including generic relationships within the family and species relationships within the genus Aptostichus. As in the Euctenizidae, virtually identical topologies were inferred with high support throughout Aphonopelma. Conclusions: The Spider Probe Kit, the first implementation of AHE methodology in Class Arachnida, holds great promise for gathering the types and quantities of molecular data needed to accelerate an understanding of the spider Tree of Life by providing a mechanism whereby different researchers can confidently and effectively use the same loci for independent projects, yet allowing synthesis of data across independent research groups.
Data from: Resolving rapid radiations within angiosperm families using anchored phylogenomics
Despite the promise that molecular data would provide a seemingly unlimited source of independent characters, many plant phylogenetic studies are still based on only two regions, the plastid genome and nuclear ribosomal DNA (nrDNA). Their popularity can be explained by high copy numbers and universal PCR primers that make their sequences easily amplified and converted into parallel datasets. Unfortunately, their utility is limited by linked loci and limited characters resulting in low confidence in the accuracy of phylogenetic estimates, especially when rapid radiations occur. In another contribution on anchored phylogenomics in angiosperms, we presented flowering plant-specific anchored enrichment probes for hundreds of conserved nuclear genes and demonstrated their use at the level of all angiosperms. In this contribution, we focus on a common problem in phylogenetic reconstructions below the family level: weak or unresolved backbone due to rapid radiations (≤10 million years) followed by long divergence, using the Cariceae-Dulichieae-Scirpeae clade (CDS, Cyperaceae) as a test case. By comparing our nuclear matrix of 461 genes to a typical Sanger-sequence dataset consisting of a few plastid genes (matK, ndhF) and an nrDNA marker (ETS), we demonstrate that our nuclear data is fully compatible with the Sanger dataset and resolves short backbone internodes with high support in both concatenated and coalescence-based analyses. In addition, we show that nuclear gene tree incongruence is inversely proportional to phylogenetic information content, indicating that incongruence is mostly due to gene tree estimation error. This suggests that large numbers of conserved nuclear loci could produce more accurate trees than sampling rapidly evolving regions prone to saturation and long-branch attraction. The robust phylogenetic estimates obtained here, and high congruence with previous morphological and molecular analyses, are strong evidence for a complete tribal revision of CDS. The anchored hybrid enrichment probes used in this study should be similarly effective in other flowering plant groups.
Anchor
Uploaded with 3dScannerApp.com Source: Objaverse 1.0 / Sketchfab
FIGURES 41–46. Haptoral structures Hamatopeduncularia bagre Hargis, 1955. 41. Dorsal anchor. 42. Ventral bar. 43. Hook. 44. Ventral anchor. 45–46. Dorsal bar. Figs. 42–44 in Monogenoidea (Polyonchoinea: Dactylogyridae) parasitizing the gills of marine catfish (Siluriformes: Ariidae) inhabiting the Atlantic Amazon Coast of Brazil
FIGURES 41–46. Haptoral structures Hamatopeduncularia bagre Hargis, 1955. 41. Dorsal anchor. 42. Ventral bar. 43. Hook. 44. Ventral anchor. 45–46. Dorsal bar. Figs. 42–44 scale of 25 µm; Figs. 41, 45–46 scale of 50 µm.
ANCHOR DA results for 20200401 with simulated data
<p>ANCHOR data assimilation results with simulated RO and simulated ionosonde data for 20200401 based on SAMI3 model, with PyIRI background. </p>
Origianl data for publication: Anchoring of Metal Complexes on Au25 Nanocluster for Enhanced Photocoupled Electrocatalytic CO2 Reduction
<p>The file contains the original data for the publication: Anchoring of Metal Complexes on Au25 Nanocluster for Enhanced Photocoupled Electrocatalytic CO2 Reduction.</p><p>Angew. Chem. Int. Ed. 2023. doi.org/10.1002/anie.202316649.</p><p>The data is grouped acording to the figures in the manuscript and the supporting information.</p><p> </p>
Titanic Anchors Front Back
Anchor asset of titanic ship Source: Objaverse 1.0 / Sketchfab
Investigating the utility of Anchored Hybrid Enrichment data to resolve the relationships among the Killifishes (Actinopterygii: Cyprinodontiformes), a globally distributed group of fishes
<p>The Killifishes (Blenniiformes: Cyprinodontoidea) are a diverse and well-known group of fishes that contains sixteen families inclusive of Anablepidae, Aphaniidae Aplocheilidae, Cubanichthyidae, Cyprinodontidae, Fluviphylacidae, Fundulidae, Goodeidae, Nothobranchiidae, Orestiidae, Pantanodontidae, Poeciliidae, Procatopodidae, Profundulidae, Rivulidae, and Valenciidae and more than 1,200 species that are globally distributed in tropical and temperate, freshwater and estuarine habitats. The evolutionary relationships among the families within the group, based on different molecular and morphological data sets, have remained uncertain. Therefore, the objective of this study was to use a targeted approach, anchored hybrid enrichment, to resolve the phylogenetic relationships among the families within the Superfamily Cyprinodontoidea (formerly the Cyprindontiformes). This study included more than 100 individuals, representing all sixteen families within Cyprinodontoidea, including many recently diagnosed families. We recovered an average of 244 loci per individual. These data were submitted to phylogenetic analyses (RaxML and ASTRAL) and although we recovered many of the same relationships as in previous studies of the group, several novel sets of relationships for other families also were recovered. In addition, two well-established clades were recovered as monophyletic and are in agreement with most previous studies. We also assessed the degree of gene tree discordance in our dataset to evaluate support for alternative topological hypotheses for interfamilial relationships within the Cyprinodontoidea using a variety of different analyses. The results from this study will provide a robust, historical framework needed to investigate a plethora of biogeographic, taxonomic, ecological, and physiological questions for this group of fishes.</p>
A rodent anchored hybrid enrichment probe set for a range of phylogenetic utility – from order to species
<p>Rodents are the largest order of mammals and contain several model organisms important to scientific research in a variety of fields, yet no large set of genomic markers have been designed for this group to date, hindering evolutionary studies into relationships of the group as a whole. Here we present a genomic probe set designed and optimized for rodents with a protocol easy to replicate with little laboratory investment. This design utilizes an anchored hybrid enrichment approach specifically targeting rodents to generate longer loci with a higher mutation rate than existing vertebrate probes to provide utility at various taxonomic levels. Using a test set of rodents from all five suborders we successfully obtained alignments for 416 of the 418 target loci with an average of 1,379 base pairs per locus and a total alignment of more than half a million base pairs. This genomic dataset performed well in all phylogenetic analyses, especially in recent phylogenetic splits, with ample parsimoniously-informative sites within genera and even within species, showing more than four times as many single nucleotide polymorphisms per locus than a recent vertebrate ultra-conserved elements study. Additional support is provided in resolving basal clades in Rodentia. By providing this probe design, we hope that more labs can easily generate data for answering questions in rodents from species delimitation to understanding relationships among families in rapid radiations.</p>
Nominal Anchoring Functions of Porohanon Common Noun Markers
<p>Porohanon, spoken in the Municipality of Poro, Camotes, Cebu, Philippines is a member of the Peripheral group of the Central Bisayan branch of the Bisayan complex. This study proposes a SPECIFIC vs. NONSPECIFIC contrast in the ABSOLUTIVE, ERGATIVE, and GENITIVE forms of the common noun markers, instead of a DEFINITE vs. INDEFINITE contrast stated in previous descriptions of the speech variety.</p>
Anchored phylogenomics and a revised classification of the Planidial Larva Clade of Jewel Wasps (Hymenoptera: Chalcidoidea)
<p>Planidia are free-living, mobile first-instar larvae that are notable in their ability to transition on a single host between different larval stadia, and for completing their development on the host prepupa as ectoparasitoids, effectively acting as larval-pupal external koinobionts. Within Chalcidoidea, a mega-diverse superfamily of parasitoid wasps, taxa with a planidium form a monophyletic group, the Planidial-Larva-Clade (PLC), which has been comprised of three recognized groups: Eutrichosomatinae (Pteromalidae), Perilampidae (Chrysolampinae, Perilampinae, Philomidinae and the unplaced genus Jambiya), and Eucharitidae (Akapalinae, Eucharitinae, Gollumiellinae and Oraseminae). To clarify the classification and better understand the evolution of this clade, we conducted a phylogenomic study of the PLC using anchored hybrid enrichment data. The phylogenetic analyses support the backbone relationship of PLC as: (Eutrichosomatinae, ((Philomidinae, Chrysolampinae), (Perilampinae, Eucharitidae))). Although excluded from the main analyses, the genus Jambiya, based on only 11 loci recovered, was placed as the sister of Chrysolampinae + Philomidinae or Perilampinae + Eucharitidae. Our results support the placement of Eutrichosomatinae at the base of the PLC phylogeny and demonstrate that Perilampidae (Philomidinae, Chrysolampinae and Perilampinae) are paraphyletic. In contrast to other studies, anchored enrichment data fail to recover the Ponerinae- Ectatomminae-Myrmeciinae (PEM) parasitoid clade within Eucharitinae, which may indicate a more complicated evolutionary history of ant-host shifts. Traits explored using Likelihood Ancestral State Reconstruction include the evolution of host associations, direct versus indirect hyperparasitism, ability to attack a host within a cocoon, soft versus hard planidial forms, and mobility of the planidium. Divergence dating based on four calibration fossils suggests that the planidial clade arose approximately 111 Ma and the evolution of ant parasitism at least 64 Ma. A revised higher-level classification of the planidial larva clade is proposed with Eutrichosomatinae elevated to Eutrichosomatidae (Rev. Stat.), Chrysolampinae and Philomidinae placed in Chrysolampidae (Rev. Stat.), Perilampidae (Rev. Stat.) restricted to what was referred to as Perilampinae, and Eucharitidae maintained with four subfamilies, with Akapalinae (unknown biology) as sister group to the core Eucharitidae, all of which are ant parasitoids. Jambiya is treated as an incertae sedis taxon within the planidial clade.</p>
A Dual Anchoring Strategy for the Directed Evolution of Improved Artificial Transfer Hydrogenases Based on Carbonic Anhydrase
<p>Data underlying the figures in the publication “A Dual Anchoring Strategy for the Directed Evolution of Improved Artificial Transfer Hydrogenases Based on Carbonic Anhydrase”, published in <em>ACS Cent. Sci. </em><em><strong>2021</strong></em><em>, 7, 11, 1874–1884.</em></p> <p><a href="https://pubs.acs.org/doi/full/10.1021/acscentsci.1c00825">https://pubs.acs.org/doi/full/10.1021/acscentsci.1c00825</a></p> <p>Table of contents:</p> <p><strong>1. Triplicates_20210118-YC-NCCR.xlsx</strong>: Experimental data for <em>Figures 3e</em>.</p> <p><strong>2. HRMS_Data.pdf</strong>: HRMS data for <em>Table 3</em>.</p> <p><strong>3. Table4_Raw.xlsx</strong>: Raw data for <em>Table 4</em>.</p> <p><strong>4. Table1_Table2_Raw.xlsx</strong>: HRMS data for <em>Table 1</em> and <em>Table 2</em>.</p> <p><strong>5. Preparative.xlsx</strong>: Raw data for <em>Table 2, </em>entries 10 and 11.</p>
Replication Package for 'Anchoring Code Understandability Evaluations Through Task Descriptions'
<p>Replication package for:</p> <p>"Anchoring Code Understandability Evaluations Through Task Descriptions", to be presented at ICPC '22: IEEE/ACM International Conference on Program Comprehension, May 21--22, 2022, Pittsburgh, Pennsylvania, United States</p> <ul> <li> The <em>data</em> folder contains dataset and Rmarkdown analysis script. We recommend loading the script with RStudio. For your convenience, we include a self-contained HTML outputted file.</li> <li>The <em>code snippets</em> folder contains the experimental code snippets and a representation with syntax highlighting in HTML. We have implemented the code in this way in LimeSurvey and think that for replication purposes it may be useful to include the markup in this replication package (see `LimeSurvey` subdirectory).</li> </ul>
AERA5-Asia: A long-term Asian precipitation dataset (0.1°, 1 hourly, 1951–2015, Asia) anchoring the ERA5-Land under the total volume control by APHRODITE (1967–1981)
<p>AERA5-Asia: A long-term Asian precipitation dataset (0.1°, 1 hourly, 1951–2015, Asia) is developed by organically combining the ERA5-Land dataset with high spatiotemporal resolutions and continuity and the APHRODITE dataset with high quality.</p> <p><strong>How to cite: Ma, Z., Xu, J., Ma, Y., Zhu, S., He, K., Zhang, S., Ma, W., Xu, X., 2022. AERA5-Asia: A long-term Asian precipitation dataset (0.1°, 1 hourly, 1951–2015, Asia) anchoring the ERA5-Land under the total volume control by APHRODITE. Bulletin of American Meteorological Society, 103 (4)., DOI: https://doi.org/10.1175/BAMS-D-20-0328.1.</strong></p> <p>Data Format: GeoTIFF</p> <p>Spatial Coverage: 60°E–150°E, 15°S–55°N, land.</p> <p>AERA5-Asia (0.1°/ hourly, 1951–1966, Asia) is available at <a href="https://doi.org/10.5281/zenodo.3609352">https://doi.org/</a><a href="https://doi.org/10.5281/zenodo.4266081">10.5281/zenodo.6367463</a></p> <p>AERA5-Asia (0.1°/ hourly, 1982–1998, Asia) is available at <a href="https://doi.org/10.5281/zenodo.3609352">https://doi.org/</a><a href="https://doi.org/10.5281/zenodo.4266081">10.5281/zenodo.4266081</a></p> <p>AERA5-Asia (0.1°/ hourly, 1999–2015, Asia) is available at <a href="https://doi.org/10.5281/zenodo.3609352">https://doi.org/</a><a href="https://doi.org/10.5281/zenodo.4264451">10.5281/zenodo.4264451</a></p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.