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Lake Mendota Microbial Observatory Temperature, Dissolved Oxygen, pH, and conductivity data, 2006-present.
The Lake Mendota Microbial Observatory collects routine water physical and chemical measurements alongside their microbial samples. This dataset includes measurements of water temperature, dissolved oxygen, pH, and conductivity collected at the central Deep Hole, collocated with a weather buoy (43°05'58.2"N 89°24'16.2"W). All measurements were collected with handheld probes. Data from 2006-2014 was compiled from multiple sources and includes only water temperature and dissolved oxygen. Data from 2014-2019 is from the same probe, a YSI Pro Plus instrument, and also includes pH and specific conductance. Routine microbial observatory sampling continues into the present.
Lake Mendota Microbial Observatory Secchi Disk Measurements 2012-present
The Lake Mendota Microbial Observatory collects routine water clarity measurements alongside their microbial samples. This dataset includes measurements of water clarity collected at the central Deep Hole, collocated with a weather buoy (43°05'58.2"N 89°24'16.2"W). All measurements were collected with handheld Secchi discs. When multiple personnel performed the Secchi disc measurements, the average and standard deviation are reported. To take the Secchi depth, sunglasses are removed and the disc is lowered on the shaded side of the boat. The Secchi depth is the average between where the Secchi disc disappears while lowering it and where it reappears while raising it. Routine microbial observatory sampling continues into the present.
Florida Bay Braun Blanquet, Everglades National Park (FCE), South Florida from October 2000 to Present (Reformatted to the ecocomDP Design Pattern)
This data package is formatted as an ecocomDP (Ecological Community Data Pattern). For more information on ecocomDP see https://github.com/EDIorg/ecocomDP. This Level 1 data package was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-fce/1129/8. The abstract below was extracted from the Level 0 data package and is included for context: Braun Blanquet surveys determining frequency, abundance, and density for seagrass and macroalgae made during visits to TS/Ph 7a, 8-11. Our long term research program focuses on the following central objective: Regional processes mediated by water flow control population and ecosystem level dynamics at any location within the coastal Everglades landscape. This phenomenon is best exemplified in the dynamics of an estuarine oligohaline zone where fresh water draining phosphorus-limited Everglades marshes mixes with water from the more nitrogen-limited coastal ocean. Graphic representation of data can be located at http://serc.fiu.edu/seagrass/!CDreport/DataHome.htm We are investigating how variability in regional climate, freshwater inputs, disturbance, and perturbations affect the coastal Everglades ecosystem. Our long term research program focuses on testing the following central idea and hypotheses: Regional processes mediated by water flow control population and ecosystem level dynamics at any location within the coastal Everglades landscape. This phenomenon is best exemplified in the dynamics of an estuarine oligohaline zone where fresh water draining phosphorus-limited Everglades marshes mixes with water from the more nitrogen-limited coastal ocean. Hypothesis 1: In nutrient-poor coastal systems, long-term changes in the quantity or quality of organic matter inputs will exert strong and direct controls on estuarine productivity, because inorganic nutrients are at such low levels. Hypothesis 2: Interannual and long-term changes in freshwater flow controls the magnitude of nut
A multi-year DAILY weather file for the Toolik Field Station at Toolik Lake, Alaska starting 1988 to present.
A multi-year DAILY weather file for the Arctic Tundra Long-Term Ecological Research (LTER) site at Toolik Lake, AK. Included are daily averages and/or maximums and minimums of air, wind speed, soil temperature, and sum of global radiation and precipitation. In 2008 Toolik Field Station took over maintenance of the main weather station. See http://toolik.alaska.edu/edc/index.php for current weather data. In addition to the main weather station the Arctic LTER maintains several stations that collect data on the experimental plots.
Hourly weather data from the Arctic LTER Wet Sedge Inlet Experimental plots from 1994 to present, Toolik Field Station, North Slope, Alaska.
Hourly weather data from the Arctic Tundra LTER wet sedge experimental site at Toolik Lake. The following parameters are measured every minute and averaged every hour: control plot air temperature and relative humidity at 3 meters and greenhouse plot air temperature and relative humidity at 1 meters (inside the greenhouse).
Bonanza Creek LTER: Yearly Seedfall Summary from 1957 to Present in the Bonanza Creek Experimental Forest near Fairbanks, Alaska
The Yearly Seedfall Summary dataset includes seed counts and germination rates of Picea glauca, Picea mariana, Betula neoalaskana (papyrifera), Picea mariana, Larix larciana, Alnus crispa, and Alnus tenuifolia. Seeds are collected in .25m^2 trays located on the forest floor of the a selected set of LTER successional sites. Germination takes plaace in the BECRU lab facility at UAF.
Bonanza Creek LTER: Hourly Snow Pillow Measurements from 2007 to Present in the Caribou-Poker Creeks Research Watershed near Fairbanks, Alaska
The snow pillow records the hourly water content of the snowpack (snow water equivalent) at the CARSNOW site within the Caribou Poker Creeks Research Watershed during the winter months. It consists of two 1m square aluminium "pillows" filled with a propylene glycol/water solution attached via piping to a druck pressure transducer. The pressure on the pillow is converted to cm of water. A manometer tube is also attached for manaul readings and calibration.
Bonanza Creek LTER: Shrub, Seedling and Sapling Density from 1975 to Present in the Bonanza Creek Experimental Forest near Fairbanks, Alaska
This study is a survey of the density of tall shrubs, saplings, and seedlings at Bonanza Creek LTER Control Plots. Densities have been measured at some sites since 1975 while others began in the mid 1980's. In 2006 methodology was changed in attempt to better capture the spatial variability of shrub and tree species within the research sites. The current method, presented here, uses a 2 meter wide transect along two site boundaries covering 220m2. All seedlings, saplings, and tall shrubs >1m (regardless of species) are counted by species and size class along the transect. The previous method used 4m2 circular plots at 20 points on a 10mx10m grid within the control plot for an area of 80m2. The circular method measured all seedlings, saplings, and a certain set of "tall shrubs", regardless of height. The height requirement creates an issue when comparing the old and new methods for early successional stands. For Alnus and Salix this is likely only a problem in the FP0 sites as they are the only sites with a high density of shrubs shorter than 1m. Shrub community changes at these early successional sites should be analyzed using percent cover data. At the later successional sites most Alnus and Salix shrubs are greater than 1m so the transect method likely does not underrepresent density. The metadata and raw data from the circular method can be found in <a href="http://www.lter.uaf.edu/data/data-detail/id/175"> Vegetation Plots of the Bonanza Creek LTER Control Plots: Species Count (1975 - 2004) </a>.
Bonanza Creek LTER: Point Bar Vegetation Survey of Bonanza Creek LTER Research Plots (2007-Present)
Beginning in 2007 ocular vegetation estimates were replaced by the point bar system. The point bar is meant to be a more objective way of carrying out annual vegetation surveys. In particular because you are placing the point bar in the same location every time a site is visited, a better understanding of vegetation change over time is possible. This method replaces the old system of estimating percent cover visually (<a href="https://www.lter.uaf.edu/data/data-detail/id/174"> Vegetation Plots of the Bonanza Creek LTER Control Plots: Species Percent Cover (1975 - 2009) </a>), which is often subject to personal bias and small shifts in species composition are often overlooked. Data from both methods were collected during the 2007, 2008, and 2009 field seasons, and regression analysis shows unique and statistically significant relationships between the two methods depending on growth form. At each site, growth forms were evaluated separately, and at each site there is a specific regression model for each growth form. In this way a user can correlate the two methods and data collected before 2007 can be compared to data collected after the new protocol was established.
Litterfall and Hare Pellet Summary at Bonanza Creek LTER Control Plots (1985 - Present)
Litterfall weights and Hare Pellet counts at LTER Control Plots within the Bonanza Creek Experimental Forest and the Caribou Poker Creek Research Watershed.
Bonanza Creek LTER: Annual Active Layer Depths from 1972 to Present in the Wickersham Fireline Sites near Fairbanks, Alaska
In June of 1971 the Wickersham fire burned 6313 ha and provided an opportunity to study various fire effects. When wildfire burns through a northern black spruce forest there is usually a subsequent increase in depth of thaw, due to the reduction in the depth of the organic layer. The construction of firelines with heavy machinery involves the complete removal of the organic layer and results in an even greater increase in active layer. This study was designed as a long-term comparison between depth of thaw on firelines, burned and unburned open black spruce forest underlain by ice rich permafrost.
Hubbard Brook Experimental Forest: Daily Precipitation Rain Gage Measurements, 1956 - present
Precipitation has been measured at the Hubbard Brook Experimental Forest using rain gauges located in or around each watershed since 1956. Three types of rain gauges have been used: standard, mechanical weight recording, and electronic weight recording. Between 1956 and 2014, precipitation was measured weekly at standard gages located at 24 stations in or near gauged watersheds and at the headquarters building. Weight-recording gauges were located at 7 of the 24 stations and capture a continuous strip-chart record. Weekly totals were prorated using daily totals from the nearest recording gauges. Beginning in 2011, electronic weighing rain gauges were implemented to measure 15-minute precipitation. The number of precipitation stations was reduced to 10, when each station was fully converted to an electronic gauge for measuring 15-minute and daily precipitation beginning in 2015. These data were gathered at the Hubbard Brook Experimental Forest in Woodstock, NH, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Multiple Element Limitation in Northern Hardwood Ecosystems (MELNHE): Soil respiration at Hubbard Brook Experimental Forest, Bartlett Experimental Forest and Jeffers Brook, central NH USA, 2008 - present
Abstract Soil respiration in 15 stands across 3 sites within the White Mountain National Forest was measured between 2008 and 2020. Stands included in the dataset are part of the Multiple Element in Northern Hardwood Ecosystems (MELNHE) study, a full-factorial NxP fertilization experiment. Pre- and post-treatment data are included, with treatment beginning in 2011. Soil temperature, soil moisture, and relative air humidity at the time of measurement were also recorded next to or above the soil respiration collar at the time of the soil respiration measurement. Having been cut between 1883 and 1990, stands are representative of different successional stages.
Hubbard Brook Experimental Forest: Wind Speed and Wind Direction Measurements, 1965 - present
Wind data have been measured by an anemometer mounted 3 m above the ground at Hubbard Brook Experimental Forest Headquarters since 1965. Prior to 1981, every mile of wind movement caused a tick mark on a strip-chart recorder, and wind direction as N, S, E, W, or a combination, was recorded continuously. From 1981-2003, wind speed and direction were measured with a MetOne wind speed sensor. In June 2003 the MetOne was replaced with a R.M. Young company wind speed direction sensor (model 05103). Since that time, wind direction (azimuth) is based on a 0 to 360 degree scale. These data were gathered at the Hubbard Brook Experimental Forest in Woodstock, NH, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Hubbard Brook Experimental Forest: Daily Solar Radiation Measurements, 1959 - present
Daily solar radiation has been measured at Hubbard Brook Experimental Forest Headquarters since 1959, using several different sensors. Radiation was recorded continuously first by a Belfort pyranograph and later by a Weather Measure pyranograph. The pyranograph has been at its current Headquarter location since 1960 and before that at weather station 1, near weir 1. With the installation of the automatic weather station in 1981, a LiCor pyranometer was collocated with the pyranograph and used as the primary radiation sensor. In April, 2018 the LiCor sensor was exchanged for an Apogee SP230 light sensor. Data checking was done on the entire record and values flagged when changes were made to previously posted, erroneous or missing data. These data are gathered at the Hubbard Brook Experimental Forest in Woodstock, NH, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Holocene Development of a Forested Wetland in Central Massachusetts from 12500 BP to Present
The post-glacial history of two adjacent sites in the Harvard Forest, a 10-ha swamp (Black Gum Swamp) and a 0.006-ha hollow (Hemlock Hollow) in a Tsuga canadensis forest were investigated using pollen analysis. The sites were selected in order to contrast the regional vegetation history revealed from the swamp sediments with the local history of the Tsuga forest reconstructed from the Hollow sediments. Specific objectives were (1) to document the natural and anthropogenic disturbance history, (2) to examine the long-term vegetation dynamics of the two sites resulting from environmental change, species migration, and disturbance, especially with respect to Tsuga, and (3) to contrast the pre-and post-settlement vegetation and environments. The Swamp and Hollow cores contain continuous sediment records covering the past 12,300 and 9500 yr, respectively. Regional vegetation changes are delimited in six pollen zones: I, Herb zone, (12500 – 11800 yr BP); II, Picea zone (11800 –9350 yr BP) III, Pinus-Quercus zone (9350-8350 yr BP); IV, Tsuga-northern hardwoods zone (8350-1750 yr BP); V, Tsuga-Castanea-hardwoods zone (1750-200 yr BP); and VI, Post-settlement zone (200 yr BP-present). No disturbances are detected in the periods of tundra or boreal vegetation from 12500 to 8350 yr BP. Since 8350 yr BP three distinct disturbance processes are detectable: (1) fires recorded in discrete charcoal horizons, (2) the apparent pathogenic decline of Tsuga (4700-3500 yr BP) and the blight of Castanea (~1915 A.D.), and (3) post-settlement forest cutting, burning, land clearance an cultivation (1750 A.D. to present).
Harvard Forest Flora Database from 1908 to Present
We conducted a floristic inventory of Harvard Forest, in order to: (1) document the current vascular flora of Harvard Forest; (2) evaluate the extent to which the flora has changed over the past century.
Harvard Forest Herbarium Database from 1908 to Present
As a part of the broader Harvard Forest Flora project (see data set HF116), we prepared a database of all specimens located in the Harvard Forest herbarium.
Lake Sediment Pollen from Knob Hill Pond in Marshfield VT from 14000 BP to Present
The abrupt, range-wide decline of Tsuga canadensis ~5500 calibrated years before present (cal. yr BP) is one of the most-studied events in North American paleoecology. Little attention, however, has been given to an earlier Tsuga decline, dated to ~6000 cal. yr BP in southern Ontario, Canada. To investigate whether this event occurred elsewhere in eastern North America, we analyzed the middle-Holocene interval of a lake-sediment record from Knob Hill Pond, located in northern Vermont, USA, an area of historically high Tsuga abundance. A dramatic, short-lived drop in Tsuga pollen abundance does occur at ~6000 cal. yr BP in the Knob Hill Pond record, indicating that Tsuga populations declined in various parts of its range. We hypothesize that both middle-Holocene declines of Tsuga were caused by the deleterious effects of pronounced droughts on this moisture-sensitive tree. Close examination of pollen data from a transect of sites across New England reveals that the earlier decline of Tsuga is present in other records, although some aspects of the event appear to have varied geographically. While northern and higher-elevation sites exhibit a nearly full recovery of Tsuga populations between the two declines, records further to the south are characterized by a stair-step pattern of progressive decline. At sites near its southern range limit, relatively warm conditions between ~6000 and 5500 cal. yr BP were apparently not conducive to the reestablishment and survival of Tsuga, and thus it was unable to recover between the drought events.
Lake Sediment Pollen from Little Pond in Bolton MA from 3000 BP to Present
Analyses of a sediment core from Little Pond, located in the town of Bolton, Massachusetts, provide new insights into the history of environmental and ecological changes in southern New England during the late Holocene. Declines in organic content and peaks in the abundance of Isoetes spores indicate reduced water depth at 2900-2600, 2200-1800, and 1200-800 calibrated years before present (cal yr BP), generally consistent with the timing of dry conditions in records from elsewhere in the northeastern United States. The Little Pond pollen record features little change over the last 3000 yr, indicating that the surrounding vegetation was relatively insensitive to these periods of drought. The 1200-800 cal yr BP dry interval, however, coincides with increased abundance of Castanea pollen, suggesting that the expansion of Castanea in southern New England may have been influenced by late-Holocene climatic variability.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.