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71
datasets available to search
ShareScore release 0.9.0
Dataset results
71 results for “bulk sample”
Bulk RNA-Seq gene expression data for 289 primary and metastatic pancreatic ductal adenocarcinoma (PDAC) tumor samples from FFPE blocks.
GEO Series GSE205154. Homo sapiens. 289 samples. Type: Expression profiling by high throughput sequencing.
These data describe bulk RNAsequencing in wild-type cerbreal organoids sampled across a time series
GEO Series GSE181405. Homo sapiens. 21 samples. Type: Expression profiling by high throughput sequencing.
Paired bulk and single-cell RNA-seq on high-grade serous ovarian cancer (HGSOC) samples
GEO Series GSE217517. Homo sapiens. 34 samples. Type: Expression profiling by high throughput sequencing.
Global mouse gene expression data from NUP98-NSD1/FLT3-ITD AML samples and Normal Wild Type whole bone marrow and Normal Wild Type lineage negative bone marrow samples assessed by Bulk RNA-Seq.
GEO Series GSE229501. Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing.
Bulk RNA-seq of primary tumor biopsy samples from prostate adenocarcinoma patients
GEO Series GSE297742. Homo sapiens. 234 samples. Type: Expression profiling by high throughput sequencing.
Bulk RNA sequencing from patient bone marrow samples
GEO Series GSE153670. Homo sapiens. 27 samples. Type: Expression profiling by high throughput sequencing.
Raw data for: Identifying archived insect bulk samples using DNA metabarcoding: A case study using the long-term Rothamsted Insect Survey
<p>These are the raw files from the Illumina MiSeq for the 12 libraries sequenced.</p>
Bulk RNA-seq of brain samples from fetuses with Tay-Sachs Disease
GEO Series GSE224860. Homo sapiens. 19 samples. Type: Expression profiling by high throughput sequencing.
Malignant Peripheral Nerve Sheath Tumors are Comprised of Two Epigenetic Subgroups with Distinct Molecular Landscapes, Outcomes and Therapeutic Targets: Bulk RNA Seq Samples
GEO Series GSE207400. Homo sapiens. 48 samples. Type: Expression profiling by high throughput sequencing.
Metataxonomics 16S rDNA of maize bulk and rhizospheric soil samples with seed bacterization with Azospirillum brasilense Ab-V5 in a dilution-to-extinction of native microbial diversity
<p><strong>The beneficial plant-microbes association has been widely explored with the purpose of understanding the mechanisms involved in this interaction, in order to develop bioinoculants for agriculture aiming at sustainability and reduction of chemical inputs use. Plant growth promoting bacteria (PGPBs) have been reported as an interesting alternative to mineral fertilizers for a range of crops. The genus Azospirillum has shown potential in plant growth promotion for maize. However, the lack of holistic comprehension about PGPBs-plant-native soil microbiota can lead to inconsistency of results in field conditions. Recent ecological theories revealed that plant microbiomes are organized as microbial hubs with keystone species and helpers. The objective of this work is to characterize the microbial community associated with a commercial maize genotype (30A37PW) under influence of the potential keystone PGPB A. brasilense Ab-v5 to support the original development of a synthetic minimum microbiome including this strain as keystone for plant growth promotion. Aiming to understand the PGPB-plant-microbiome system, we conducted a greenhouse experiment in which the synergistic effect of Ab-V5 and soil native microbial community were evaluated through soil and rhizosphere metataxonomics, metagenomics and plant phenomics. Our results revealed that maize seed bacterization with the PGPB Ab-V5 promotes plant growth. This effect is boosted by the interaction with specific microbial groups present in the soil native community. The strain Ab-V5 persists in the maize rhizosphere until 25 days after sowing. In order to understand which microbial groups are important during the interaction Ab-V5-plant-native soil microbial community, 16S rDNA metataxonomics and metagenomics analysis will be conducted in maize soil and rhizosphere samples. This unprecedented omics approach for the holistic view of the complex system composed by inoculant-plant-microbiota and data integration will allow the development of new strategies for optimization of plant biostimulants recommendation with enhanced efficiency for establishment in the field. </strong></p>
The link between non-aureus staphylococci in bulk milk and in milk samples of dairy cows
<p>Non-<em>aureus</em> staphylococci (NAS) have become the most common causes of bovine subclinical mastitis on modern dairy farms. Identifying and understanding the ecological nature and epidemiological behavior of the causative mastitis agents circulating in a dairy herd is integral to the implementation of herd-specific mastitis prevention plans and the improvement of mastitis management. Bulk milk sampling for bacterial culturing is readily available as part of (regulatory) milk quality screening programs worldwide and includes the milk of all lactating and milked animals in the herd. In a first phase of a larger project we aim (1) to study the presence and distribution of NAS species in bulk milk samples and composite cow milk samples simultaneously and (2) to perform strain-typing to determine which proportion of NAS isolates from bulk milk in dairy herds originate from the mammary quarters of cows.Non-<em>aureus</em> staphylococci (NAS) have become the most common causes of bovine subclinical mastitis on modern dairy farms Identifying and understanding the ecological nature and epidemiological behavior of the causative mastitis agents circulating in a dairy herd is integral to the implementation of herd-specific mastitis prevention plans and the improvement of mastitis management . Bulk milk sampling for bacterial culturing is readily available as part of (regulatory) milk quality screening programs worldwide and includes the milk of all lactating and milked animals in the herd. In a first phase of a larger project we aim (1) to study the presence and distribution of NAS species in bulk milk samples and composite cow milk samples simultaneously and (2) to perform strain-typing to determine which proportion of NAS isolates from bulk milk in dairy herds originate from the mammary quarters of cows.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.