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Predicting Phenotypic Traits Using Conglomerate RNA-seq Datasets -- Datasets
<p>Phenotype Annotations and Corresponding Gene Expression Matrices created for the paper Hadish et al. [REF]. Raw Phenotypic Annotations were downloaded and processed from NCBI BioProject and raw RNA-seq data was downloaded from NCBI SRA. All annotations are contained within a single file for either Tissue or Age. Gene expression matrices are for each of the 12 species used in this project in their unproccessed form. </p> <p>Scripts used in this project are located here: </p> <p>GitLab Repository: </p> <p>https://gitlab.com/ficklin-lab/predicting-phenotypic-traits-using-conglomerate-rna-seq-datasets</p> <p>Paper Citation: </p> <p>[REF]</p>
Fig. 3 in An Early Miocene Dome-Skulled Chalicothere from the ''Arikaree'' Conglomerates of Darton: Calibrating the Ages of High Plains Paleovalleys Against Rocky Mountain Tectonism
Fig. 3. Geologic crosssection from Spoon
Chiral Conglomerate Crystals in the CSD (v5.43; Nov 2021)
<p>The list of chiral conglomerate crystals found by manual search of the CSD (Version 5.43; November 2021) from 2020-2021. Associated with the following preprint:<a href="https://doi.org/10.26434/chemrxiv-2023-jt4jf">https://doi.org/10.26434/chemrxiv-2023-jt4jf </a></p>
Effects of gravel size and content on the mechanical properties of conglomerate
<p>Stress-strain curves and fracture distribution characteristics indicate that gravel content influences the mechanical properties of rocks. In this study, uniaxial compression tests were conducted on the conglomerate containing gravels having diameters between 2–26 mm. In these tests, we found that many micro fractures were generated around evenly distributed gravels. Additionally, we found that as the gravel content increased, the uniaxial compressive strength and elastic modulus of conglomerate decreased; however, the plasticity characteristics of conglomerate increased. The results of our analysis imply that when the gravel content is less than <span><span></span></span> (14.61–31.72 %), the macro mechanical properties are mainly influenced by the cementing material, and between <span><span></span></span> and <span><span></span></span> (78.50 %), failure is determined by the local Orowan additional stress, which is related to the mechanical properties of the cement and the cementing strength,and higher than <i>f</i><sub><i>ch</i></sub><span><span></span></span>, failure is determined by the mutual Hertz stress among the gravels.</p>
Effects of gravel size and content on the mechanical properties of conglomerate
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Text-fig. 8. Mhengere Hill fossiliferous localities (1–3). Silicified tree trunks and fragments of wood are abundant in the poorly indurated basal deposits (marly sand and conglomerate) as well as in the silicified lime-rich sandstones that form the hill, which is interpreted to be the remains of a palaeopan. Image modified from Google Earth. in Stratigraphy, Chronology And Palaeontology Of The Tertiary Rocks Of The Cheringoma Plateau, Mozambique
Text-fig. 8. Mhengere Hill fossiliferous localities (1–3). Silicified tree trunks and fragments of wood are abundant in the poorly indurated basal deposits (marly sand and conglomerate) as well as in the silicified lime-rich sandstones that form the hill, which is interpreted to be the remains of a palaeopan. Image modified from Google Earth.
Figure 6 in Washington State (USA) trigoniids (Bivalvia) from the conglomerate of Patterson Lake (Early Cretaceous)
Figure 6. Columbitrigonia condoni (Packard, 1921). All are silicone casts of external molds. A, B. UWBM 112552 from UWBM loc. 9486. Posterior end missing. A. Flank view of LV. B. Oblique view showing area and marginal carina. C. UWBM 112554 from UWBM loc. 9487. Flank view of RV. D. UWBM 112555 from UWBM loc. 9487. Flank view of LV showing commarginal lirae on the posterior terminus. Scale bars = 10 mm.
Figure 1. Locality Map for Burke Museum sites B-9486 and B-9487 in Washington State (USA) trigoniids (Bivalvia) from the conglomerate of Patterson Lake (Early Cretaceous)
Figure 1. Locality Map for Burke Museum sites B-9486 and B-9487 on Patterson Mountain, and B-9541 on Rendezvous Road. Sites indicated by red stars. Conglomerate of Patterson Lake (cPL) highlighted in green. Specific locality details can be obtained from the UWBM or the author.
Text-fig. 2. Lithology of basal Upper Cretaceous sediments at Kaňk – Na Vrších (a). 1 – conglomerates; 2 – limestones; 3 – erosional surface with borings and mineralization; 4 – limestone layer with nodule-like bodies; 5 – calcareous claystones. (after Žítt, 1992; slightly modified). in Sabellidae And Serpulidae (Polychaeta, Canalipalpata) From The Locality Kaňk - Na Vrších In Kutná Hora (Upper Cenomanian - Lower Turonian, Bohemian Cretaceous Basin - The Czech Republic)
Text-fig. 2. Lithology of basal Upper Cretaceous sediments at Kaňk – Na Vrších (a). 1 – conglomerates; 2 – limestones; 3 – erosional surface with borings and mineralization; 4 – limestone layer with nodule-like bodies; 5 – calcareous claystones. (after Žítt, 1992; slightly modified).
Text-fig. 2. Stratigraphical section at Předboj (according to Žítt et al. (1999), modified). Legend: 1 – Proterozoic bedrock, 2 – conglomerate, 3 – marl, marlstone, Ph – phosphatic crusts, R – reworked deposit, C – Upper Cenomanian, T – Lower Turonian, Q – Quaternary deposits, c – occurrence of invertebrate coprolites. in Sabellid And Serpulid Worms (Polychaeta, Canalipalpata, Sabellida, Sabellidae, Serpulidae) From The Rocky Coast Facies (Late Cenomanian) At Předboj Near Prague
Text-fig. 2. Stratigraphical section at Předboj (according to Žítt et al. (1999), modified). Legend: 1 – Proterozoic bedrock, 2 – conglomerate, 3 – marl, marlstone, Ph – phosphatic crusts, R – reworked deposit, C – Upper Cenomanian, T – Lower Turonian, Q – Quaternary deposits, c – occurrence of invertebrate coprolites.
Text-fig. 1. Geological map of the site Kučlín, Trupelník Hill. 1 – dumpsite body, exploitation faces, 2 – landslide body, 3 – occurrence of the basalt in the landslide body, 4 – tuff, tuffite with gneiss particles, 5 – 11 – Late Eocene rocks. 5 – basalts, 6 – tuff, tufite, 7 – diatomaceous cherts layer enclosing lenses of diatomaceous earth, 8 – diatomitic breccia, 9 – diatomaceous shale, 10 – diatomaceous clays to diatomites, 11 – calcareous diatomaceous clays to diatomaceous limestones and re-deposited Cretaceous material, 12 – Late Turonian marlstone to limestone, 13 – Middle Turonian marlstone, 14 – Middle Turonian organo-detritic limestone to conglomerate, 15 – Late Proterozoic orthogneiss, 16 – Syčivka creek, 17 – road, field drives, 18 – Kučlín village. in Geology Of The Site Kučlín, Trupelník Hill Near Bílina In North Bohemia
Text-fig. 1. Geological map of the site Kučlín, Trupelník Hill. 1 – dumpsite body, exploitation faces, 2 – landslide body, 3 – occurrence of the basalt in the landslide body, 4 – tuff, tuffite with gneiss particles, 5 – 11 – Late Eocene rocks. 5 – basalts, 6 – tuff, tufite, 7 – diatomaceous cherts layer enclosing lenses of diatomaceous earth, 8 – diatomitic breccia, 9 – diatomaceous shale, 10 – diatomaceous clays to diatomites, 11 – calcareous diatomaceous clays to diatomaceous limestones and re-deposited Cretaceous material, 12 – Late Turonian marlstone to limestone, 13 – Middle Turonian marlstone, 14 – Middle Turonian organo-detritic limestone to conglomerate, 15 – Late Proterozoic orthogneiss, 16 – Syčivka creek, 17 – road, field drives, 18 – Kučlín village.
Fig. 2 in An Early Miocene Dome-Skulled Chalicothere from the ''Arikaree'' Conglomerates of Darton: Calibrating the Ages of High Plains Paleovalleys Against Rocky Mountain Tectonism
Fig. 2. Geology of the capping sandstones and gravels of the Patrick Buttes. Crosshatching indicates buttes of the northern trend capped by the Barstovian Spoon Butte Beds; an open pattern indicates buttes of the southern trend capped by the early Hemingfordian Carpenter Ranch Formation. Gravels of the Carpenter Ranch Formation (table 1) were sampled at sites marked I through VI; gravels from localities marked by black diamonds were combined to form the composite Spoon Butte Beds sample. Site OBQ marks the acid volcanicbearing terrace gravel of the Oberg Quarries. A stippled pattern shows the reconstructed areal extent of the Lay Ranch Beds, an early Miocene paleovalley fill containing latest Arikareean mammals.
Fig. 10 in An Early Miocene Dome-Skulled Chalicothere from the ''Arikaree'' Conglomerates of Darton: Calibrating the Ages of High Plains Paleovalleys Against Rocky Mountain Tectonism
Fig. 10. Partial right mandible of the chalicothere Tylocephalonyx (UNSM 44800) with m3 and partial m2, labial view, Carpenter Ranch Formation, from the south escarpment of Deahl Butte, Goshen County, Wyoming (locality data provided in table 3).
Fig. 23 in An Early Miocene Dome-Skulled Chalicothere from the ''Arikaree'' Conglomerates of Darton: Calibrating the Ages of High Plains Paleovalleys Against Rocky Mountain Tectonism
Fig. 23. Left maxilla of the canid Phlaocyon leucosteus (UNSM 44822) with P3M2, Cow Trail Notch local fauna, Carpenter Ranch Formation, East Sturdivant Butte, Sioux County, Nebraska. Stereopair. Scale bar, 1 cm.
Рис. 27. Связь степени пигментации PI ΑорсаΛьной поверхности мезосомы Mesobuthus eupeus с коΛичеством особей в посеΛениях (r = 0.854; p <0.05). Fig. 27. Correlation between the degree of pigmentation PI of the dorsal surface of the Mesobuthus eupeus mesosome and the number of specimens in conglomerations (r = 0.854; p <0.05). in Materials on the colour pattern variability of Mesobuthus eupeus (C.L. Koch, 1839) (Arachnida: Scorpiones) in southeastern Shirvan and Gobustan (Eastern Azerbaijan)
Рис. 27. Связь степени пигментации PI ΑорсаΛьной поверхности мезосомы Mesobuthus eupeus с коΛичеством особей в посеΛениях (r = 0.854; p <0.05). Fig. 27. Correlation between the degree of pigmentation PI of the dorsal surface of the Mesobuthus eupeus mesosome and the number of specimens in conglomerations (r = 0.854; p <0.05).
Data from: A Tournaisian (earliest Carboniferous) conglomerate-preserved non-marine faunal assemblage and its environmental and sedimentological context
A conglomerate bed from the Tournaisian Ballagan Formation of Scotland preserves a rich array of vertebrate and other non-marine fossils providing an insight into the wider ecosystem and palaeoenvironment that existed during this pivotal stage of Earth history. It challenges hypotheses of a long-lasting post-extinction trough following the end-Devonian extinction event. The fauna recovered includes a wide size range of tetrapods, rhizodonts and dipnoans, from tiny juveniles or small-bodied taxa up to large adults, and more than one taxon of each group is likely. Some fauna, such as actinopterygians and chondrichthyans, are rare as macrofauna but are better represented in the microfossil assemblage. The fauna provides evidence of the largest Carboniferous lungfish ever found. The specimens are preserved in a localised, poorly-sorted conglomerate which was deposited in the deepest part of a river channel, the youngest of a group of channels. In addition to the fossils (micro- and macro-), the conglomerate includes locally-derived clasts of palaeosols and other distinctive elements of the surrounding floodplains. Charcoal fragments represent stem and possible trunk tissue from arborescent pteridosperms. Preservation of the fossils indicates some aerial exposure prior to transport, with abrasion from rolling. The findings presented here contrast with other published trends in vertebrate size that are used to interpret a reduction in maximum sizes during the Tournaisian. The richness of the fauna runs counter to the assumption of a depauperate non-marine fauna following the end-Devonian Hangenberg event, and charcoal content highlights the occurrence of fire, with the requisite levels of atmospheric oxygen during that stage.
Randomized Clinical Trial by Conglomerates on the Efficacy of Maintenance of Physical Exercise in Myocardial Ischemia
ClinicalTrials.gov study NCT04251611. IPD Sharing: YES. Countries: 1. Publications: 0.
Data from: A Tournaisian (earliest Carboniferous) conglomerate-preserved non-marine faunal assemblage and its environmental and sedimentological context
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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International Brain Laboratory public data
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