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Fig. 1 in Taxonomy of some Galeommatoidea (Mollusca, Bivalvia) associated with deep-sea echinoids: A reassessment of the bivalve genera Axinodon Verrill & Bush, 1898 and Kelliola Dall, 1899 with descriptions of new genera Syssitomya gen. nov. and Ptilomyax gen. nov.
Fig. 1. Holotype of Axinodon symmetros Verrill & Bush, 1898, USNM 35175. A-B. SEM of hinges of right and left valves. C-D. SEM of internal of right and left valves. E. Photo micrograph of internal of right valve. F-G. SEM of external of right and left valves. H. SEM of prodissoconch.
Fig. 2 in Taxonomy of some Galeommatoidea (Mollusca, Bivalvia) associated with deep-sea echinoids: A reassessment of the bivalve genera Axinodon Verrill & Bush, 1898 and Kelliola Dall, 1899 with descriptions of new genera Syssitomya gen. nov. and Ptilomyax gen. nov.
Fig. 2. Holotype of Kellia symmetros Jeffreys, 1876, USNM 170626. A-B. SEM of hinges of right and left valves. C-D. SEM of internal of right and left valves. E-F SEM of external of right and left valves. G-H. photo micrographs of internal and external of right valve.
Figs 30–35 in Description of a new species of Loxosceles Heineken & Lowe (Araneae, Sicariidae) recluse spiders from Hidalgo, Mexico, under integrative taxonomy: morphological and DNA barcoding data (CO1 + ITS2)
Figs 30–35. Variation of the male palps, left palps, prolateral views. 30–33. Loxosceles tolantongo sp. nov. 30–32. Tourist Center Grutas de Tolantongo, Municipality of Cardonal, Hidalgo (type locality). 33. 500 m west of the entrance No. 5 to the Tourist Center Grutas de Tolantongo, Municipality of Cardonal, Hidalgo. 34–35. Loxosceles jaca Gertsch & Ennik, 1983. 2.5 km north of Jacala de Ledezma, Municipality of Jacala de Ledezma, Hidalgo. Scale bars = 0.5 mm.
Fig. 56 in Description of a new species of Loxosceles Heineken & Lowe (Araneae, Sicariidae) recluse spiders from Hidalgo, Mexico, under integrative taxonomy: morphological and DNA barcoding data (CO1 + ITS2)
Fig. 56. Maximum likelihood tree inferred from the concatenated matrix (CO1 + ITS2) of species of Loxosceles Heineken & Lowe, 1832 from Mexico. Colors of branches and bars indicate different species. Numbers above bars represent the delimitation methods: 1 = morphology (M); 2 = neighbor joining (NJ); 3 = ABGD with initial partitions (IP); 4–5 = ABGD with recursive partitions (RP); 6 = GMYC yule analysis; 7 = GMYC coalescent analysis; 8 bPTP with ML; 9 = bPTP with IB. Numbers below bars represent species recovered for each delimitation method. Red numbers correspond to Bayesian posterior probabilities, black numbers are bootstrap support values from the ML analysis.
Figs 20–25 in Description of a new species of Loxosceles Heineken & Lowe (Araneae, Sicariidae) recluse spiders from Hidalgo, Mexico, under integrative taxonomy: morphological and DNA barcoding data (CO1 + ITS2)
Figs 20–25. Loxosceles tolantongo sp. nov., ♂ holotype (CNAN-T01317). 20–22. Left palp, prolateral, dorsal and retrolateral views, respectively. 23–25. Detail of the bulb and embolus, retrolateral, dorsal and apical views, respectively. Scale bars: 20–22 = 0.5 mm; 23–25 = 0.2 mm.
Fig. 54 in Description of a new species of Loxosceles Heineken & Lowe (Araneae, Sicariidae) recluse spiders from Hidalgo, Mexico, under integrative taxonomy: morphological and DNA barcoding data (CO1 + ITS2)
Fig. 54. Maximum likelihood tree inferred from CO1 gene of species of Loxosceles Heineken & Lowe, 1832 from Mexico. Colors of branches and bars indicate different species. Numbers above bars represent the delimitation methods: 1 = morphology (M); 2 = neighbor joining (NJ); 3 = ABGD with initial partitions (IP); 4–6 = ABGD with recursive partitions (RP); 7 = GMYC yule analysis; 8 = GMYC coalescent analysis; 9 = bPTP with ML; 10 = bPTP with IB. Numbers below bars represent species recovered for each delimitation method. Red numbers on branches correspond to Bayesian posterior probabilities, black numbers are bootstrap support values from the ML analysis.
Molecular species delimitation of larks (Aves: Alaudidae), and integrative taxonomy of the genus Calandrella, with the description of a range-restricted African relic taxon
<p>This deposition contains the phylogenetic and species delimitation data for the manuscript "Molecular species delimitation of larks (Aves: Alaudidae), and integrative taxonomy of the genus <em>Calandrella</em>, with the description of a range-restricted African relic taxon" by Stervander <em>et al</em>. </p> <p>For details of samples/sequences/leaves, please refer to Appendix A of the above manuscript. </p> <p><strong>Phylogenetic analyses</strong></p> <ol> <li>Fasta sequence alignment of cytochrome b for the lark family and outgroups: Alaudidae_cytb_extended_200316.fa</li> <li>BEAST v. 2.6.1 input file: Alaudidae_cytb_HKYGI_BDrelLN_modOp2003_20M1K.xml</li> <li>BEAST v. 2.6.1 output log file: Alaudidae_cytb_HKYGI_BDrelLN_modOp_20M1K.log</li> <li>BEAST v. 2.6.1 output (raw) trees file: Alaudidae_cytb_HKYGI_BDrelLN_modOp_20M1K.trees</li> <li>TreeAnnotator maximum credibility clade tree based on BEAST v. 2.6.1 output, newick format: Alaudidae_cytb_HKYGI_BDrelLN_modOp_20M1K_c40Mbi5.mccmed.nwk</li> </ol> <p><strong>Species delimitation</strong></p> <ol> <li>Input tree, manipulated to remove negative branch lengths (replaced by 0) and tips/leafs that are single representatives of a species, based on current taxonomy (IOC v. 10.2), newick format: Alaudidae_cytb_HKYGI_BDrelLN_c40Mbi5_mccmed_nonNeg_multiSeq_ingroup_remDuplicate.nwk</li> <li>mPTP text output of the multi-rate species delimitation, containing command for run and species delimitation results: Alaudidae200316_cytb_HKYGI_BDrelLN_c40Mbi5_remDuplCaboweni201007_mccmed_delim_varRate_10M_minbrAUTO.1602073064.txt</li> <li>mPTP likelihood log of the multi-rate species delimitation: Alaudidae200316_cytb_HKYGI_BDrelLN_c40Mbi5_remDuplCaboweni201007_mccmed_delim_varRate_10M_minbrAUTO.out.txt</li> <li>mPTP output tree in SVG format, with support values for species delimitation: Alaudidae200316_cytb_HKYGI_BDrelLN_c40Mbi5_remDuplCaboweni201007_mccmed_delim_varRate_10M_minbrAUTO.1602073064.combined.svg</li> </ol>
FIG. 1 in Historical note on the taxonomy of the genus Delphinium L. (Ranunculaceae) with an amended description of its floral morphology
FIG. 1. — Illustrations showing speciment of Consolida (DC.) Gray with other names than 'Consolida' or 'Delphinium', reproduced from: A, Bourdichon (1505- 1510: 35); B, Fuchs (1542: 27); C, Fuchs (1543: 15); D, Matthioli (1554: 357); E, Laguna (1555: 308); F, Matthioli (1565: 760). A, Plant called by the vernacular French name 'Jalousie'; B, Plant named by the erroneous name 'Chamaemelum eranthemon' and B, C, by the vernacular German name 'Rittersporn' still in use; D-F, Plants are named by the erroneous name 'Cuminum syl. alternum'.
FIG. 3. — A in Historical note on the taxonomy of the genus Delphinium L. (Ranunculaceae) with an amended description of its floral morphology
FIG. 3. — A, Flower drawing of Chienia honanensis W.T. Wang (modified from Wang [1964]); B, Chienia honanensis specimen [PE00026940] housed at PE herbarium (there are no scales on the original drawing and on the image of the original specimen); C, D, D. grandiflorum L. specimens [PE00477116 and PE00477117 respectively] housed at PE herbarium collected in the same province and the same year as the Chienia honanensis specimen and with which it matches morphologically speaking, excepted that PE00026940 specimen would show a teratological form of the floral structure.
FIG. 2 in Historical note on the taxonomy of the genus Delphinium L. (Ranunculaceae) with an amended description of its floral morphology
FIG. 2. — Photographs and drawings of flowers from herbarium specimens used for lectotypifying of the genus Delphinium L. or showing a peloric floral organization: A, a1, Consolida regalis Gray (LINN 694.1); B, b1, Delphinium peregrinum L. (BM-000628786); C, c1, D. elatum (S09-28218); D, d1, D. turcicum (H. Duman, Vural, Aytaç & Adigüzel) Espinosa (P04021863). Floral diagrams and formulae of: a2, a3, Consolida regalis; b2, b3, D. peregrinum; c2, c3, D. elatum; d2, d3, D. turcicum. Dark green, peduncle or receptacle, bract and bracteoles; violet, sepals; blue, petals; yellow cream colour, tepals; yellow, stamens; light green, carpels. Scale basr: 1 cm.
FIGURES 9 12 in On the taxonomy of Turbonilla puncta (C. B. Adams, 1850) (Gastropoda, Pyramidellidae), with the description of a new species from Brazil and remarks on other western atlantic species
FIGURES 9 12: Turbonilla puncta (C. B. Adams, 1850). 9 Syntype of Turbonilla peilei Dall & Bartsch, 1911 (USNM 221610), length: 6.8 mm; 10 base of syntype of T. peilei; 11 syntype of Turbonilla haycocki Dall & Bartsch, 1911 (USNM 221611), length: 5.5 mm; 12 base of syntype of T. haycocki. Scale bars: 500 m.
FIGURES 1 8 in On the taxonomy of Turbonilla puncta (C. B. Adams, 1850) (Gastropoda, Pyramidellidae), with the description of a new species from Brazil and remarks on other western atlantic species
FIGURES 1 8: Turbonilla puncta (C. B. Adams, 1850). 1 Turbonilla puncta (neotype = holotype of Turbonilla alfredi Abbott, 1958 (ANSP 198692), length: 5.6 mm; 2 whole shell (ANSP 371203), length: 4.2 mm; 3 whole shell (IBUFRJ 9722), length: 5.1 mm; 4 whole shell (IBUFRJ 9722), length: 5.5 mm; 5 protoconch (IBUFRJ 9722); 6 detail of base of neotype; 7 detail of last two whorls (IBUFRJ 9722); 8 last whorl (IBUFRJ 9722). Scale bars: 6: 200 m; 5, 7, 8: 500 m.
FIGURES 18 26 in On the taxonomy of Turbonilla puncta (C. B. Adams, 1850) (Gastropoda, Pyramidellidae), with the description of a new species from Brazil and remarks on other western atlantic species
FIGURES 18 26: Turbonilla obsoleta Dall, 1892: 18 holotype (USNM 113233), length: 4.5 mm; 19 whole shell (MORG 38640), length: 4.4 mm; 20 whole shell (MNHN), length: 4.6 mm; 21 whole shell (MORG 23912), length: 5.4 mm; 22 whole shell (MORG 38640); 23 whole shell (MNHN), length: 4.7 mm; 24 base (MORG 38640); 25 protoconch (MNHN); 26: base (MNHN). Scale bars: 300 m.
FIGURE 7. Pachypops pigmaeus n in Taxonomy of the South American genus Pachypops Gill 1861 (Teleostei: Perciformes: Sciaenidae), with the description of a new species
FIGURE 7. Pachypops pigmaeus n. sp., holotype, Rio Machado, Rondônia, Brazil, MZUSP 34108, 40 mm SL.
FIGURE 4 in Taxonomy of the Hister criticus group, with description of a new species (Coleoptera: Histeridae)
FIGURE 4. Photographs of propygidium and pygidium of Hister spp. A. Hister criticus; B. H. laevimargo; C. H. latimargo; D. H. guanacaste; E. H. foveipygus.
FIGURE 3 in Taxonomy of the Hister criticus group, with description of a new species (Coleoptera: Histeridae)
FIGURE 3. Dorsal habitus photographs of Hister spp. A. Hister criticus; B. H. laevimargo; C. H. latimargo.
FIGURE 3 in Molecular phylogeny, morphology and taxonomy of Moroccan Triops granarius (Lucas, 1864) (Crustacea: Notostraca), with the description of two new species
FIGURE 3. Phylogenetic relationships of A, Triops samples obtained in a combined analysis of three molecular markers (12 S, 16 S, 28 S) and B, western Moroccan Triops granarius samples as inferred from 12 S sequences (best scoring trees obtained in RAxML are shown). ML bootstrap support / Bayesian posterior probabilities are given for selected nodes. Provisional taxon labels of previously discovered lineages correspond to those used in Korn et al. (2013). Symbols correspond to those used in Fig. 1.
FIGURE 2 in Molecular phylogeny, morphology and taxonomy of Moroccan Triops granarius (Lucas, 1864) (Crustacea: Notostraca), with the description of two new species
FIGURE 2. Schematic drawing of A, a detail of the right lateral margin of the telson of a Triops granarius specimen in dorsal view, showing how the length of the largest furcal spine was measured (dotted line), and B, the endopodite of the second trunk limb in anterior view, demonstrating how the length of the endopodite was measured (dotted line). C, a detail of the row of digging spines positioned at the margin of the endopodite showing three examples of length measurements (dotted lines; note that in the present example the largest spine cannot be identified easily so that several rather large spines have to be measured in order to obtain a value for the length of the largest spine) and the position of subsidiary lines used for measurements of spine lengths (dashed lines). D, the distal part of the endopodite showing the distal claw and three of the digging spines. The point where the dashed line (drawn from the base of the distal claw) meets the dotted line (median line of the distal claw) was used as the starting point for length measurements of the endopodite (in the present study the base of the distal claw was defined as the point where the distalmost digging spine diverges from the endopodite). Grey bars (directed approx. in a right angle to measured lines) indicate where measured lines start and end. Abbreviations: C, distal claw; DS, digging spines; SP, largest furcal spine; SPL, length of largest furcal spine; TE, telson; F, furcal ramus.
FIGURE 1. A in Molecular phylogeny, morphology and taxonomy of Moroccan Triops granarius (Lucas, 1864) (Crustacea: Notostraca), with the description of two new species
FIGURE 1. A, map indicating the geographical position of the study area (marked in black). B, map showing the geographical distribution of studied populations of Triops granarius. Symbols used to mark study sites refer to phylogenetic lineages (see Table 1, Fig. 3; population no. 6 was determined morphologically by DFA in this study). Open square: ‘ Triops granarius 8 ’; filled asterisk: ‘ Triops granarius 10 ’.
Fig. 17 in Taxonomy and distribution of the genus Trichomyrmex Mayr, 1865 (Hymenoptera: Formicidae) in the Arabian Peninsula, with the description of two new species
Fig. 17. Distribution map of Trichomyrmex perplexus (Radchenko, 1997) and T. robustior (Forel, 1892).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.