Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
192
datasets available to search
ShareScore release 0.9.0
Dataset results
192 results for “dispersal distance”
Using isolation-by-distance to jointly estimate effective population density and dispersal distance: a practical evaluation using bumble bees
Open the record for dataset details and reuse information.
Data from: Influence of paleolithic range contraction, admixture and long-distance dispersal on genetic gradients of modern humans in Asia
Open the record for dataset details and reuse information.
Data to support publication figures and animation scripts at GitHub: Modeling weather-driven long-distance dispersal of spruce budworm moths (Choristoneura fumiferana)
Open the record for dataset details and reuse information.
Global expansion of a solitary-social tropical spitting spider shaped by multiple long-distance dispersals
Open the record for dataset details and reuse information.
Data from: A distance-performance trade-off in the phenotypic basis of dispersal
Open the record for dataset details and reuse information.
Data from: Assembling a late-successional lichen community by long-distance dispersal: Lessons for restoration
Open the record for dataset details and reuse information.
Intercontinental long‐distance seed dispersal across the Mediterranean Basin explains population genetic structure of a bird‐dispersed shrub
Open the record for dataset details and reuse information.
Dispersal distances of radio-tracked cane toads in French Guiana
Open the record for dataset details and reuse information.
Data from: Fruit traits of pioneer trees structure seed dispersal across distances on tropical deforested landscapes: implications for restoration
<ol> <li>Pioneer trees with fleshy fruits are typically planted in restoration projects to attract frugivores as a mean to increase dispersal and accelerate forest regeneration. However, differences in fruit traits of pioneer trees can potentially influence dispersal and their restoration outcomes.</li> <li>Here we investigated the effects of bird and plant traits, and distance to forest fragments, on the seed rain using a tree-planting experiment replicated in 12 deforested sites in Brazil. Factors were fruit traits of pioneer trees (wind-dispersed, bird-dispersed with lipids or with carbohydrates, and controls) and distance (10, 50, 300 m) from forest fragments.</li> <li>We found that density and richness of birds and seeds decreased exponentially with distance from fragments, yet these effects were minor compared to the effects of fruit traits on the structure of the seed rain.</li> <li>Overall, plots with fleshy-fruited pioneers attracted much greater bird activity and seed dispersal than plots with wind-dispersal pioneers and the controls. For instance, plots with carbohydrate-rich fruits received more than twice the average species richness and density of birds and seeds of plots with lipid-rich pioneer trees, surpassing wind-dispersed pioneers by more than 80%, and controls by over 90%. Furthermore, the fruit trait treatments resulted in morphological shifts in the average traits of visiting birds. Significant differences in bill gape and flight capacities (wing-loading) were associated with the differences in the seed rain associated with each treatments.</li> <li> <i>Synthesis and applications</i>. Understanding how trait-matching processes mediating mutualistic seed dispersal by frugivores interact with distance-dependent dispersal limitation on deforested tropical landscapes is critical for improving forest restoration efforts. This is especially relevant in the context of applied nucleation. As shown here, avian seed dispersal can thus be manipulated in restoration projects in order to increase connectivity and speed up forest recovery and the provision of the multiple ecosystem services that follow forest succession.</li> </ol>
Data from: Which frugivory‐related traits facilitated historical long‐distance dispersal in the custard apple family (Annonaceae)?
Aim Long-distance dispersal has contributed to the disjunct biogeographical distribution of rain forest plants – something that has fascinated biogeographers since Humboldt's time. However, the dispersal 'agent' for these tropical plant lineages remains puzzling. Here, we investigate which frugivory-related traits may have facilitated past intercontinental long-distance dispersal in the custard apple family (Annonaceae), a major vertebrate-dispersed tropical plant family. We hypothesize that long-distance dispersal was associated with the evolution of traits related to dispersal by large-bodied mammals (e.g. large, dull-coloured, 'megafaunal' fruits) and strong-flying, ocean-crossing birds and bats (e.g. dehiscent, moniliform or cauliflorous fruits). Location Global Taxon Annonaceae Methods We used a fossil-calibrated phylogenetic framework to infer the biogeographic history of 234 Annonaceae species (10%, covering nearly all genera) in relation to the evolution of 15 frugivory-related traits, using maximum likelihood and Bayesian inferences. Furthermore, we used linear and generalized linear models and phylogenetic simulations to test whether ancestral fruit traits during intercontinental dispersal were different from those of other lineages not involved in long-distance dispersal. Results We inferred the ancestral Annonaceae fruits to be small with a single or few small seeds and a small number of fruitlets. These fruits were most probably apocarpous, indehiscent and/or moniliform (i.e. long beads of fruitlets). Furthermore, most of the long-distance dispersal events in Annonaceae occurred via the expanded tropical forests in the Early Cenozoic ('geodispersal'), and were significantly associated with large (c. 3 cm long), dull-coloured fruits, and short stipes. Additionally, long-distance dispersal was also facilitated by dehiscent, moniliform and non-cauliflorous fruits. Main conclusions We suggest that the evolution of frugivory-related traits associated with dispersal by frugivores that frequently move across large distances and/or barriers, such as large-bodied mammals and strong-flying birds, has contributed to the disjunct tropical biogeographical distribution of Annonaceae, and probably of tropical rain forest plants more generally.
Data from: Covariation in abscission force and terminal velocity of wind-borne sibling seeds alters long distance dispersal projections
1. Despite the fact that seeds are unlikely to be identical—even among siblings within a maternal individual—dispersal models typically use one mean trait value to represent the ability of an entire species to disperse. Previous work has shown that the environmental conditions under which individuals leave the maternal site strongly affect how far seeds will travel. However, less is known about how trait variation within individuals contributes to dispersal or how such variation might interact with abiotic factors. 2. Here, we develop the use of an ergometer in a novel application to investigate variation in seed traits, specifically the force required for seed abscission and seed terminal velocity, exhibited by seeds from different locations within maternal capitula of the invasive species Carduus nutans (Asteraceae). 3. We find that seeds from the center of capitula are significantly easier to liberate and have slower falling velocities than siblings found near the edge of capitula. When abscission force is positively correlated with terminal velocity, slowly falling, easily abscised seeds are projected to travel much further than the average seed on slow winds. 4. Our experimental and theoretical results, which together show that within-individual variation can strongly affect model projections of species dispersal, have important implications for our broader understanding of population spread rates, the spatial structure of populations, metapopulation connectivity, and gene flow in the landscape.
Data from: Genotyping by sequencing reveals contrasting patterns of population structure, ecologically mediated divergence and long-distance dispersal in North American palms
Comparative studies can provide powerful insights into processes that affect population divergence and thereby help to elucidate the mechanisms by which contemporary populations may respond to environmental change. Furthermore, approaches such as genotyping by sequencing (GBS) provide unprecedented power for resolving genetic differences among species and populations. We therefore used GBS to provide a genome-wide perspective on the comparative population structure of two palm genera, Washingtonia and Brahea, on the Baja California peninsula, a region of high landscape and ecological complexity. First, we used phylogenetic analysis to address taxonomic uncertainties among five currently recognised species. We resolved three main clades, the first corresponding to W. robusta and W. filifera, the second to B. brandegeei and B. armata, and the third to B. edulis from Guadalupe Island. Focusing on the first two clades, we then delved deeper by investigating the underlying population structure. Striking differences were found, with GBS uncovering four distinct Washingtonia populations and identifying a suite of loci associated with temperature, consistent with ecologically mediated divergence. By contrast, individual mountain ranges could be resolved in Brahea and few loci were associated with environmental variables, implying a more prominent role of neutral divergence. Finally, evidence was found for long-distance dispersal events in Washingtonia but not Brahea, in line with knowledge of the dispersal mechanisms of these palms including the possibility of human-mediated dispersal. Overall, our study demonstrates the power of GBS together with a comparative approach to elucidate markedly different patterns of genome-wide divergence mediated by multiple effectors.
Data from: The effect of landscape structure on dispersal distances of the Eurasian red squirrel
Landscape structure can affect dispersal and gene flow in a species. In urban areas, buildings, roads and small habitat patches make the landscape highly fragmented and can inhibit movement and affect dispersal behavior. Similarly, in rural forested areas, large open areas, such as fields, may act as barriers to movement. We studied how landscape structure affects natal dispersal distances of Eurasian red squirrels (Sciurus vulgaris) in an urban area and a rural area in Finland, by monitoring juvenile red squirrels with radio telemetry. We observed extremely long dispersal distances—up to 16 km—in the rural study area, but shorter distances—on average only half a kilometer—in the urban study area. The landscape structure affected the eventual dispersal paths; in the rural landscape, dispersers favored spruce dominated areas and avoided fields along their dispersal route, although they occasionally even crossed wide fields. In the urban landscape, squirrels preferred areas with deciduous or coniferous trees. The movement steps made by dispersers were longer in the more hostile landscape compared to forested areas. Despite these effects on movement path, the landscape structure only had a minor effect on straight-line dispersal distances moved from the natal nest. In other words, individuals moved longer distances and were likely to circumvent barriers in their path, but this did not affect how far they settled from their natal home. This result indicates that, although landscape structure has obvious effects on movement, it still may have only a small effect on other aspects of the population, for example, gene flow.
Data from: Does long distance pollen dispersal preclude inbreeding in tropical trees? Fragmentation genetics of Dysoxylum malabaricum in an agro-forest landscape
Tropical trees often display long distance pollen dispersal, even in highly fragmented landscapes. Understanding how patterns of spatial isolation influence gene flow and interact with background patterns of fine scale spatial genetic structure are critical for evaluating the genetic consequences of habitat fragmentation. In the endangered tropical timber tree Dysoxylum malabaricum (Meliaceae) we apply eleven microsatellite markers with paternity and parentage analysis to directly estimate contemporary gene flow across a large area (216 km2) in a highly fragmented agro-forest landscape. A comparison of genetic diversity and genetic structure in adult and juvenile life stages indicates an increase of differentiation and fine-scale spatial genetic structure (FSGS) over time. Paternity analysis and parentage analysis demonstrate high genetic connectivity across the landscape by pollen dispersal. A comparison between mother trees in forest patches with low and high densities of adult trees shows that the frequency of short distance mating increases, as does average kinship among mates in low density stands. We interpret this as an early warning sign of potentially negative genetic consequences of forest fragmentation. Single isolated trees, in contrast, frequently receive heterogeneous pollen from distances exceeding five kilometres. We discuss the processes leading to the observed patterns of gene flow and the implications of this for conservation management of D. malabaricum and tropical trees more generally.
Global diversification of Anelosimus spiders driven by long distance overwater dispersal and Neogene climate oscillations
Vicariance and dispersal events, combined with intricate global climatic history, have left an imprint on the spatiotemporal distribution and diversity of many organisms. Anelosimus cobweb spiders (Theridiidae), are solitary-social organisms with a cosmopolitan distribution in temperate- to-tropical areas. Their evolutionary history and the discontinuous distribution of species richness suggest that 1) long distance overwater dispersal, and 2) climate change during the Neogene (23–2.6 Ma), may be major factors in explaining their distribution and diversification. Here we test these hypotheses, and explicitly test if global Miocene/Pliocene climatic cooling in the last 8 Ma affected Anelosimus radiation in parallel in South America and Madagascar. To do so, we investigate the phylogeny and spatiotemporal biogeography of Anelosimus through a culmination of a 20-year comprehensive global sampling at the species level (69 species, including 84% of the known 75 species worldwide, represented by 268 individuals) using nucleotide data from seven loci (5.5 kb). Our results strongly support the monophyly of Anelosimus with an Oligocene (~30 Ma) South American origin. Major clades on other continents originate via multiple, long-distance dispersal events, of solitary or subsocial—but not social—lineages, from the Americas. These intercontinental dispersals were to Africa, Madagascar (twice), and SE Asia/Australasia. The early diversification of Anelosimus spiders coincides with a sudden thermal increase in the late Oligocene (~27–25 Ma), though no causal connection can be made. Our results, however, strongly support the hypothesis that global Neogene climatic cooling in the last 8 Ma drove Anelosimus radiation in parallel in S. America and Madagascar, offering a rare empirical evidence for diversification of a socially diverse group driven by an interplay between long distance dispersal and global Neogene climatic changes.
Data from: Relationship type affects the reliability of dispersal distance estimated using pedigree inferences in partially sampled populations: a case study involving invasive American mink in Scotland
Estimating dispersal—a key parameter for population ecology and management—is notoriously difficult. The use of pedigree assignments, aided by likelihood-based software, has become popular to estimate dispersal rate and distance. However, the partial sampling of populations may produce false assignments. Further, it is unknown how the accuracy of assignment is affected by the genealogical relationships of individuals and is reflected by software-derived assignment probabilities. Inspired by a project managing invasive American mink (Neovison vison), we estimated individual dispersal distances using inferred pairwise relationships of culled individuals. Additionally, we simulated scenarios to investigate the accuracy of pairwise inferences. Estimates of dispersal distance varied greatly when derived from different inferred pairwise relationships, with mother–offspring relationship being the shortest (average = 21 km) and the most accurate. Pairs assigned as maternal half-siblings were inaccurate, with 64%–97% falsely assigned, implying that estimates for these relationships in the wild population were unreliable. The false assignment rate was unrelated to the software-derived assignment probabilities at high dispersal rates. Assignments were more accurate when the inferred parents were older and immigrants and when dispersal rates between subpopulations were low (1% and 2%). Using 30 instead of 15 loci increased pairwise reliability, but half-sibling assignments were still inaccurate (>59% falsely assigned). The most reliable approach when using inferred pairwise relationships in polygamous species would be not to use half-sibling relationship types. Our simulation approach provides guidance for the application of pedigree inferences under partial sampling and is applicable to other systems where pedigree assignments are used for ecological inference.
Data from: Seed and pollen dispersal distances in two African legume timber trees and their reproductive potential under selective logging
The natural regeneration of tree species depends on seed and pollen dispersal. To assess if limited dispersal could be critical for the sustainability of selective logging practices, we performed parentage analyses in two Central African legume canopy species displaying contrasted floral and fruit traits: Distemonanthus benthamianus and Erythrophleum suaveolens. We also developed new tools linking forward dispersal kernels with backward migration rates to better characterize long-distance dispersal. Much longer pollen dispersal in D. benthamianus (mean distance dp=700m, mp=52% immigration rate in 6 km2 plot, s=7% selfing rate) than in E. suaveolens (dp=294m, mp=22% in 2 km2 plot, s=20%) might reflect different insect pollinators. At a local scale, secondary seed dispersal by vertebrates led to larger seed dispersal distances in the barochorous E. suaveolens (ds=175m) than in the wind-dispersed D. benthamianus (ds=71m). Yet, seed dispersal appeared much more fat-tailed in the latter species (15-25% seeds dispersing >500m), putatively due to storm winds (papery pods). The reproductive success was correlated to trunk diameter in E. suaveolens and crown dominance in D. benthamianus. Contrary to D. benthamianus, E. suaveolens underwent significant assortative mating, increasing further the already high inbreeding of its juveniles due to selfing, which seems offset by strong inbreeding depression. To achieve sustainable exploitation, seed and pollen dispersal distances did not appear limiting, but the natural regeneration of E. suaveolens might become insufficient if all trees above the minimum legal cutting diameter were exploited. This highlights the importance of assessing the diameter structure of reproductive trees for logged species.
Data from: Exploring potential establishment of marine rafting species after transoceanic long-distance dispersal
Aim On March 11, 2011, the Great East Japan Earthquake triggered a massive tsunami that resulted in the largest known rafting event in recorded history. By spring 2012, marine debris began washing ashore along the Pacific Coast of the U.S. and Canada with a wide-range of Asian coastal species attached. We used this unique dataset, where the source region, date of dislodgment, and landing location are known, to assess the potential for species invasions by transoceanic rafting on marine debris. Location Northeast Pacific from 20 to 60°N Time period Current Major taxa studied Forty-eight invertebrate and algal species recorded on Japanese tsunami marine debris. Methods We developed Maximum Entropy (MaxEnt) species distribution models for 48 species recorded on Japanese tsunami marine debris to predict establishment potential along the Pacific Coast from 20-60°N. Models were compared within the context of historical marine introductions from Japan to this region to validate the emergence of marine debris as a novel vector for species transfer. Results Overall, 27% (13 species) landed with debris at locations with suitable environmental conditions for establishment and survival, indicating that these species may be able to establish new populations or introduce greater genetic diversity to already established non-native populations. A further 22 species have environmental match in areas where tsunami debris likely landed, but was not extensively sampled. Nearly 100 Japanese marine species previously invaded the northeastern Pacific, demonstrating this region's environmental suitability for rafting Japanese biota. Historical invasions from Asia are highest in California and largely known from bays and harbors. Main conclusions Marine debris is a novel and growing vector for non-native species introduction. By utilizing a unique dataset of Japanese tsunami marine debris species, our predictive models show capacity for new transoceanic invasions and can focus monitoring priorities to detect successful long-distance dispersal across the world's oceans.
Data from: Long-distance dispersal suppresses introgression of local alleles during range expansions
During range expansions, even low levels of interbreeding can lead to massive introgression of local alleles into an invader's genome. Nonetheless, this pattern is not always observed in human populations. For instance, European Americans in North America are barely introgressed by Amerindian genes in spite of known contact and admixture. With coalescent spatially explicit simulations, we examined the impact of long-distance dispersal (LDD) events on introgression of local alleles into the invading population using a set of different demographic scenarios applicable to a diverse range of natural populations and species. More specifically, we consider two distinct LDD models: one where LDD events originate in the range core and targets only the expansion front and a second one where LDD events can occur from any area to any other. We find that LDD generally prevents introgression, but that LDD events specifically targeting the expansion front are most efficient in suppressing introgression. This is likely due to the fact that LDD allows for the presence of a larger number of invader alleles at the wave front, where effective population size is thus increased and local introgressed alleles are rapidly outnumbered. We postulate that the documented settlement of pioneers directly on the wave front in North America has contributed to low levels of Amerindian admixture observed in European Americans and that this phenomenon may well explain the lack of introgression after a range expansion in natural populations without the need to evoke other mechanisms such as natural selection.
Data from: Long-distance dispersal maximizes evolutionary potential during rapid geographic range expansion
Conventional wisdom predicts that sequential founder events will cause genetic diversity to erode in species with expanding geographic ranges, limiting evolutionary potential at the range margin. Here, we show that invasive European starlings (Sturnus vulgaris) in South Africa preserve genetic diversity during range expansion, possibly as a result of frequent long-distance dispersal events. We further show that unfavourable environmental conditions trigger enhanced dispersal, as indicated by signatures of selection detected across the expanding range. This brings genetic variation to the expansion front, counterbalancing the cumulative effects of sequential founding events and optimizing standing genetic diversity and thus evolutionary potential at range margins during spread. Therefore, dispersal strategies should be highlighted as key determinants of the ecological and evolutionary performances of species in novel environments and in response to global environmental change.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.