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89 results for “draft genome”
The draft genome of Spiraea crenata L. – the first complete genome of Spiraeeae
<p><em>Spiraea crenata</em> L. is a deciduous shrub distributed across the Eurasian steppe zone. The species is of cultural and horticultural importance and occurs in scattered populations throughout its westernmost range. Currently, there is no genomic information on the tribe of Spiraeeae. Therefore, we sequenced and assembled the whole genome of <em>S. crenata</em> using second- and third-generation sequencing and a hybrid assembly approach to expand genomic resources for conservation and support research on this horticulturally important lineage. In addition to the organellar genomes (i.e., the plastome and the mitochondrion), we present the first draft genome of the species with an estimated size of 220 Mbp, an N50 value of 7.7 Mbp, and a BUSCO score of 96.0%. Being the first complete genome of Spiraeeae, this may not only be the first step in the genomic study of a rare plant, but also a contribution to genomic resources supporting the study of biodiversity and evolutionary history of the Rosaceae.</p>
Data from: "Development of the draft genome sequence of the marbled flounder Pseudopleuronectes yokohamae as a reference of population genomic analysis" in Genomic Resources Notes accepted 1 February 2015 – 31 March 2015
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Data from: A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them
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Data from: Draft assembly of elite inbred line PH207 provides insights into genomic and transcriptome diversity in maize
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Data from: The Salmonella In Silico Typing Resource (SISTR): an open web-accessible tool for rapidly typing and subtyping draft Salmonella genome assemblies
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Data from: First draft genome of an iconic clownfish species (Amphiprion frenatus)
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['Draft Genome Sequences of Acinetobacter and Bacillus Strains Isolated from Spacecraft-Associated Surfaces']
['We report here the draft genome sequences of four strains isolated from spacecraft-associated surfaces exhibiting increased resistance to stressors such as UV radiation and exposure to H2O2. The draft genomes of strains 1P01SC, FO-92, 50v1, and 2P01AA had sizes of 5,500,894 bp, 4,699,376 bp, 3,174,402 bp, and 4,328,804 bp, respectively.']
['"Draft Genome Sequences of Members of the family Methylobacteriaceae Associated with the International Space Station"']
['"Draft Genome Sequences of isolates belonging to family Methylobacteriaceae Isolated from the International Space Station"']
['Draft Genome Sequences of Two Fusarium oxysporum Isolates Cultured from Infected Zinnia hybrida Plants Grown on the International Space Station']
['Draft genome sequences of two Fusarium oxysporum isolates cultured from infected Zinnia hybrida plants grown on the International Space Station']
['Draft Genome Sequence of Solibacillus kalamii, Isolated from an Air Filter Aboard the International Space Station']
['Solibacillus kalamii was isolated from a HEPA filter in the International Space Station. This strain was of particular interest due to the unique environment in which it was isolated from.']
A draft map of cis-regulatory sequences in the mouse genome
GEO Series GSE29184. Mus musculus. 143 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Genome variation profiling by high throughput sequencing.
A draft map of cis-regulatory sequences in the mouse genome [HiC]
GEO Series GSE34587. Mus musculus. 2 samples. Type: Other.
A draft map of cis-regulatory sequences in the mouse genome [ChIP-Seq]
GEO Series GSE29218. Mus musculus. 122 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Data from: The draft genome of Primula veris yields insights into the molecular basis of heterostyly
[No abstract entered]
Aspergillus flavus draft genome assemblies
<p>225 genome assemblies of <em>Aspergillus flavus</em> isolates.</p>
Data from: The draft genome of Primula veris yields insights into the molecular basis of heterostyly
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['"Draft Genome Sequences of Sphingomonas sp. Isolated from the International Space Station Genome sequencing and assembly"']
['"Draft Genome Sequences of Sphingomonas sp. Isolated from the International Space Station"']
A draft map of cis-regulatory sequences in the mouse genome [RNA-Seq]
GEO Series GSE29278. Mus musculus. 19 samples. Type: Expression profiling by high throughput sequencing.
Draft genome sequence of Klebsiella quasipneumoniae subsp. similipneumoniae strain IF3SW-P1 isolated from the International Space Station
In 2015, the Advanced Resistive Exercise Device (ARED) foot panel on the International Space Station (ISS) was sampled to identify culturable microorganisms. The whole-genome of the strain IF3SW-P1 was sequenced using the Oxford Nanopore Technologies platform and identified as Klebsiella quasipneumoniae subsp. quasipneuomoniae, a Biosafety Level-2 (BSL-2) human pathogen. This whole-genome sequence will aid in comparative genomic analyses with Earth-origin pathogens for differences in virulence and antimicrobial resistance in microorganisms exposed to spaceflight conditions.
Draft Genome Sequence of Solibacillus kalamii, Isolated from an Air Filter Aboard the International Space Station
Solibacillus kalamii was isolated from a HEPA filter in the International Space Station. This strain was of particular interest due to the unique environment in which it was isolated from.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.