Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
2,207
datasets available to search
ShareScore release 0.9.0
Dataset results
2,207 results for “epigenomics”
The pan-epigenome of the symbiotic nitrogen fixing bacterium Sinorhizobium meliloti unravels unexpected variability of DNA-methylation profiles in closely related strains
<p>Supplementary Dataset S1. Genome coverage data and assignment of contigs to <em>S. meliloti</em> 1021 genome replicons. MS Excel file format (.xlsx file)</p> <p>Supplementary Dataset S2. Folder containing summary pangenome statistics, core and accessory orthologs, alignments and R script. Zip archive</p> <p>Supplementary Dataset S3. Number motifs and methylated motifs identified and their ratio. Data on number of motifs (RAW), number of methylated motifs (METH), fraction of methylated motifs (RATIO) related to functional features (CDSid, tIG and US sequences) and to replicons (CHR, chromosome; PA, pSymA; PB, pSymB and other) are reported. Red color in columns from “other” indicate missing data (i.e., absence of replicons other than chromosome, pSymA, pSymB). .xlsx file</p>
Epigenomic and Machine Learning Models to Predict Pancreatic Cancer
ClinicalTrials.gov study NCT06334458. IPD Sharing: Not stated. Countries: 4. Publications: 0.
Epigenomic and Metabolomic Signatures of APOA2 Gene by Saturated Fat Interaction
ClinicalTrials.gov study NCT03452787. IPD Sharing: NO. Countries: 1. Publications: 9.
Epigenome-wide DNA Methylation Profiling in Aneurysmal Subarachnoid Hemorrhage and Delayed Ischemic Neurologic Deficit
ClinicalTrials.gov study NCT06881329. IPD Sharing: YES. Countries: 1. Publications: 1.
In-depth comparative toxicogenomics of glyphosate and Roundup herbicides: Histopathology, transcriptome and epigenome signatures, and DNA damage
Open the record for dataset details and reuse information.
Data from: Evolutionary epigenomics of retrotransposon-mediated methylation spreading in rice
Open the record for dataset details and reuse information.
Complementary genomic and epigenomic adaptation to environmental heterogeneity
Open the record for dataset details and reuse information.
Dual DNA/protein tagging of open chromatin unveils dynamics of epigenomic landscapes in leukemia
Open the record for dataset details and reuse information.
Data from: Epigenome-wide association study of lung function level and its change
Open the record for dataset details and reuse information.
Data from: Epigenomic study identifies a novel mesenchyme homeobox2-GLI1 transcription axis involved in cancer drug resistance, overall survival and therapy prognosis in lung cancer patients
Open the record for dataset details and reuse information.
Timing of blood sample processing affects the transcriptomic and epigenomic profiles in CD4+ T-cells of atopic subjects
Open the record for dataset details and reuse information.
Epigenomic profiling of TASOR in Hela cells using ChIP, CUT&RUN and CUT&Tag
<p>Example bigwig coverage tracks illustrating TASOR-regulated H3K9me3 and TASOR genome binding.</p> <p>Mapped to hg38.</p> <p>For detailed methods, see linked preprint.</p>
Data from: Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation
Variation in the presence or absence of transposable elements (TEs) is a major source of genetic variation between individuals. Here, we identified 23,095 TE presence/absence variants between 216 Arabidopsis accessions. Most TE variants were rare, and we find these rare variants associated with local extremes of gene expression and DNA methylation levels within the population. Of the common alleles identified, two thirds were not in linkage disequilibrium with nearby SNPs, implicating these variants as a source of novel genetic diversity. Many common TE variants were associated with significantly altered expression of nearby genes, and a major fraction of inter-accession DNA methylation differences were associated with nearby TE insertions. Overall, this demonstrates that TE variants are a rich source of genetic diversity that likely plays an important role in facilitating epigenomic and transcriptional differences between individuals, and indicates a strong genetic basis for epigenetic variation.
Impact of BMI and waist circumference on epigenome-wide DNA methylation and identification of epigenetic biomarkers in blood: an EWAS in multi-ethnic Asian individuals
<p>The datasets contains summary statistics from meta-analysis of EWAS on BMI and WC in 409 multi-ethnic Asians.</p>
Epigenome roadmap test data
<p>H3K27me3. Belongs to Epigenome Roadmap</p>
Predicting Protein Synergistic Effect in Arabidopsis using Epigenome Profiling (Data Source)
<p>Peak-calling data of QHistone Histone related 1,534 ChIP-seqs and protein 1,566 ChIP-seqs.</p> <p><strong>histone related chip seq:</strong> The folder contains bed file (narrowPeak) of 1,534 histone ChIP-seqs and corrosponding meta-data.</p> <p><strong>protein chip seqs: </strong>The folder contains bed file (narrowPeak) of 1,566 protein ChIP-seqs and corrosponding meta-data.</p>
Workflow Trace Archive workflowhub_epigenomics_dataset-hep_grid5000_schema-0-2_epigenomics-hep-g5k-run001 trace
Workload downloaded from WorkflowHub, see http://workflowhub.isi.edu/.
Workflow Trace Archive workflowhub_epigenomics_dataset-ilmn_chameleon-cloud_schema-0-2_epigenomics-ilmn-100000-cc-run004 trace
Workload downloaded from WorkflowHub, see http://workflowhub.isi.edu/.
Workflow Trace Archive workflowhub_epigenomics_dataset-hep_futuregrid_schema-0-2_epigenomics-hep-fg-run001 trace
Workload downloaded from WorkflowHub, see http://workflowhub.isi.edu/.
Workflow Trace Archive workflowhub_epigenomics_dataset-hep_chameleon-cloud_schema-0-2_epigenomics-hep-100000-cc-run005 trace
Workload downloaded from WorkflowHub, see http://workflowhub.isi.edu/.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.