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141 results for “forest regeneration”
Insect herbivore damages on white spruce growing in plantations and naturally regenerated under-canopy forest stands
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Differential effects of ecosystem engineering by the superb lyrebird Menura novaehollandiae and herbivory by large mammals on floristic regeneration and structure in wet eucalypt forests
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Data and Code from: Sheltered or suppressed? Tree regeneration in unmanaged European forests
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Restoration thinning permits stems to capitalise on high-rainfall years in a regenerating endangered forest ecosystem
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Repeated fuel treatments fall short of fire-adapted regeneration objectives in a Sierra Nevada mixed conifer forest, USA
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Data from: Edaphic factors, successional status, and functional traits drive habitat associations of trees in naturally regenerating tropical dry forests
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Data from: Nitrogen, phosphorus, and cation use efficiency in stands of regenerating tropical dry forest
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Data from: Seed bank diversity and composition during natural tropical forest regeneration
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Forest diversity and structure in regenerating secondary forests after shifting cultivation abandonment in the Philippines uplands
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Light quality and spatial variability influences on seedling regeneration in Hawaiian lowland wet forests
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Complex interactions of deer herbivory, soil chemistry, and competing vegetation explain oak-hickory forest tree regeneration in central Pennsylvania, USA
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More widespread alien tree species do not have larger impacts on regeneration of native tree species in a tropical forest reserve
There is insufficient information regarding the factors affecting the environmental impacts of alien species. In particular, little is known about whether there is any relationship between the invasiveness (establishment and spread) of an introduced species and its per-capita impact. We experimentally assessed the relationship between the extent of spread of up to 29 alien plant species and their impact on recruitment of native tree species in Amani Botanical Garden, Tanzania. We also studied the effects of allelochemicals of selected alien on native plant species to assess potential mechanisms of impact. We found no relationship between the extent of spread of an alien tree species and their impact on seed germination, seedling survival and seedling communities of native trees in their understory, and no indication that allelochemicals consistently explain their effects on recruitment of the studied species. These results suggest that extent of spread cannot be used as a proxy for impact. Hence, managers should continue assessing both the spread and the impact of alien species when prioritising alien species for management.
Data from: Saguaro (Carnegiea gigantea) mortality and population regeneration in the cactus forest of Saguaro National Park: seventy-five years and counting
Annual census data spanning seventy-five years document mortality and regeneration in a population of saguaro cactus (Carnegiea gigantea) in the Cactus Forest of the Rincon Mountain District of Saguaro National Park near Tucson, AZ. On 6 four-hectare plots, each saguaro was censused and a methodical search for new saguaros was conducted annually each year from 1942 through 2016, with the exception of 1955. Regeneration has been episodic with 828 plants established from 1959 through 1993 compared with 34 plants established between 1942 and 1958 and only three plants established after 1993. The years preceding 1959 and following 1993, include some of the driest decades in centuries in southern Arizona. While woodcutting and cattle grazing are believed to be among the causes of decades of failed regeneration prior to 1958, neither of these factors contributed to the failed regeneration following 1993. The height structure of the population from 1942 to 2016 shifted dramatically from a population dominated by large saguaros (> 5.4 m tall) in the first three decades of the study to a population dominated by small saguaros (< 1.8 m tall) in the most recent two decades. Mortality is shown to be strongly age dependent. In the year following the 2011 catastrophic freeze, 21 of 59 plants older than 80 years died compared with zero deaths in 270 plants between the ages of 29 and 80 years. Saguaros under 40 years old, growing under small shrubs or in the open, have a lower probability of survival than better protected saguaros. Long-term population monitoring is essential to understanding the complex impacts of human and environmental factors on the population dynamics of long-lived species.
Data from: Scale-dependent variation in nitrogen cycling and soil fungal communities along gradients of forest composition and age in regenerating tropical dry forests
Rates of ecosystem nitrogen (N) cycling may be mediated by the presence of ectomycorrhizal fungi, which compete directly with free‐living microbes for N. In the regenerating tropical dry forests of Central America, the distribution of ectomycorrhizal trees is affected by succession and soil parent material, both of which may exert independent influence over soil N fluxes. In order to quantify these interacting controls, we used a scale‐explicit sampling strategy to examine soil N cycling at scales ranging from the microsite to ecosystem level. We measured fungal community composition, total and inorganic N pools, gross proteolytic rate, net N mineralization and microbial extracellular enzyme activity at multiple locations within 18 permanent plots that span dramatic gradients of soil N concentration, stand age and forest composition. The ratio of inorganic to organic N cycling was correlated with variation in fungal community structure, consistent with a strong influence of ectomycorrhiza on ecosystem‐scale N cycling. However, on average, > 61% of the variation in soil biogeochemistry occurred within plots, and the effects of forest composition were mediated by this local‐scale heterogeneity in total soil N concentrations. These cross‐scale interactions demonstrate the importance of a spatially explicit approach towards an understanding of controls on element cycling.
Data from: Impacts of growing-season climate on tree growth and post-fire regeneration in ponderosa pine and Douglas-fir forests
We studied the impacts of climate variability on low-elevation forests in the U.S. northern Rocky Mountains by quantifying how post-fire tree regeneration and radial growth varied with growing-season climate. We reconstructed post-fire regeneration and radial growth rates of Pinus ponderosa and Pseudotsuga menziesii at 33 sites that burned between 1992 and 2007, by aging seedlings at the root-shoot boundary. We also measured radial growth in adult trees from 12 additional sites that burned between 1900 and 1990. To quantify the relationship between climate and regeneration, we characterized seasonal climate before, during, and after recruitment pulses using superposed epoch analysis. To quantify growth sensitivity to climate, we performed moving regression analysis for each species and for juvenile and adult life stages. Climatic conditions favoring regeneration and tree growth differed between species. Water deficit and temperature were significantly lower than average during recruitment pulses of ponderosa pine, suggesting that germination-year climate limits regeneration. Growing degree days were significantly higher than average during years with Douglas-fir recruitment pulses, but water deficit was significantly lower one year following pulses, suggesting moisture sensitivity in two-year-old seedlings. Growth was also sensitive to water deficit, but effects varied between life stages, species, and through time, with juvenile ponderosa pine growth more sensitive to climate than adult growth and juvenile Douglas-fir growth. Increasing water deficit corresponded with reduced adult growth of both species. Increases in maximum temperature and water deficit corresponded with increases in juvenile growth of both species in the early 20th century but strong reductions in growth for juvenile ponderosa pine in recent decades. Changing sensitivity of growth to climate suggests that increased temperature and water deficit may be pushing these species towards the edge of their climatic tolerances. Our study demonstrates increased vulnerability of dry mixed-conifer forests to post-fire regeneration failures and decreased growth as temperatures and drought increase. Shifts towards unfavorable conditions for regeneration and juvenile growth may alter the composition and resilience of low-elevation forests to future climate and fire activity.
The effects of tropical secondary forest regeneration on avian phylogenetic diversity.
<p>1. The conversion of tropical forests to farmland is a key driver of the current extinction crisis. With the present rate of deforestation unlikely to subside, secondary forests that regenerate on abandoned agricultural land may provide an option for safeguarding biodiversity. While species richness (SR) may recover as secondary forests get older, the extent to which phylogenetic diversity (PD)—the total amount of evolutionary history present in a community—is conserved is less clear. Maximising PD has been argued to be important to conserve both evolutionary heritage and ecosystem function.</p> <p>2. Here, we investigate the effects of secondary forest regeneration on PD in birds. The regeneration of secondary forests could lead to a community of closely related species, despite maintaining comparable SR to primary forests, and thus have diminished biodiversity value with reduced evolutionary heritage.</p> <p>3. We use a meta-dataset of paired primary and secondary forest sites to show that, over time, forest specialist species returned across all sites as secondary forest age increased. Forest specialists colonise secondary tropical forests in both the Old World and the New World, but recovery of PD and community composition with time is only evident in the Old World.</p> <p>4. Synthesis and applications. Whilst preserving primary tropical forests remains a core conservation goal, our results emphasize the important role of secondary forest in maintaining tropical forest biodiversity. Biodiversity recovery differs between Old and New World secondary forests and with proximity to primary forest, highlighting the need to consider local or regional differences in landscape composition and species characteristics, especially resilience to forest degradation and dispersal capability. While farmland abandonment is increasing across marginal areas in the tropics, there remains a critical need to provide long-term management and protection from reconversion to maximize conservation benefits of secondary forests. Our study suggests such investments should be focused on land in close proximity to primary forests. 30-Mar-2020</p>
Data from: Successional status, seed dispersal mode and overstorey species influence tree regeneration in tropical rain-forest fragments in Western Ghats, India
The effects of fragmentation and overstorey tree diversity on tree regeneration were assessed in tropical rain forests of the Western Ghats, India. Ninety plots were sampled for saplings (1–5 cm diameter at breast height (dbh); 5×5-m plots) and overstorey trees (>9.55 cm dbh; 20×20-m plots) within two fragments (32 ha and 18 ha) and two continuous forests. We tested the hypotheses that fragmentation and expected seed-dispersal declines (1) reduce sapling densities and species richness of all species and old-growth species, and increase recruitment of early-successional species, (2) reduce the prevalence of dispersed recruits and (3) increase influence of local overstorey on sapling densities and richness. Continuous forests and fragments had similar sapling densities and species richness overall, but density and richness of old-growth species declined by 62% and 48%, respectively, in fragments. Fragments had 39% lower densities and 24% lower richness of immigrant saplings (presumed dispersed into sites as conspecific adults were absent nearby), and immigrant densities of old-growth bird-dispersed species declined by 79%. Sapling species richness (overall and old-growth) increased with overstorey species richness in fragments, but was unrelated to overstorey richness in continuous forests. Our results show that while forest fragments retain significant sapling diversity, losses of immigrant recruits and increased overstorey influence strengthen barriers to natural regeneration of old-growth tropical rain forests.
Data from: Genet dynamics of a regenerating dwarf bamboo population across heterogeneous light environments in a temperate forest understorey
Despite the advantage of plant clonality in patchy environments, studies focusing on genet demography in relation to spatially heterogeneous environments remain scarce. Regeneration of bamboos in forest understoreys after synchronous die-off provides an opportunity for assessing how they come to proliferate across heterogeneous light environments. In a Japanese forest, we examined genet demography of a population of Sasa kurilensis over a 7-year period starting 10 years after die-off, shortly after which some genets began spreading horizontally by rhizomes. The aboveground biomass was estimated and genets were discriminated in 9-m2 plots placed under both canopy gaps and closed canopies. Overall, the results suggest that the survival and spread of more productive genets and the spatial expansion of genets into closed canopies underlie the proliferation of S. kurilensis. Compared to canopy gaps, the recovery rate of biomass was much slower under closed canopies for the first 10 years after the die-off, but became accelerated during the next seven years. Genet survival was greater for more productive genets (with greater initial number of culms), and the spaces occupied by genets that died were often colonized afterward by clonal growth of surviving genets. The number of genets decreased under canopy gaps due to greater mortality, but increased under closed canopies where greater number of genets colonized clonally from outside the plots than genets died. The colonizing genets were more productive (having larger culms) than those originally germinated within the plots, and the contribution of colonizing genets to the biomass was greater under closed canopies. Our study emphasizes the importance of investigating genet dynamics over relevant spatio-temporal scales to reveal processes underlying the success of clonal plants in heterogeneous habitats.
Data from: Topsoil removal through scarification improves natural regeneration in high-graded Nothofagus old-growth forests
1.High grading by removing the majority of trees with superior timber quality has led to loss of productivity and biodiversity in forests. Typically, after high grading, little attention is given to tree regeneration. Thus, undesirable understory vegetation often dominates for a long time, leading to stagnation in forest recovery and so-called arrested succession. In such settings, managing understory vegetation using topsoil removal through scarification has been proposed as a restoration tool to encourage tree regeneration. 2.We investigated the effectiveness of topsoil removal as a restoration technique in high-graded Nothofagus old-growth forests in the Chilean Andes. In these forests, high grading often leads to understories being dominated by dense thickets of native bamboo, Chusquea culeou. These understory conditions typically delay succession by preventing tree regeneration. 3.T-tests were used to compare vegetation development in areas with topsoil removal against those without. Non-parametric multiplicative regression (NPMR) was used to investigate which environmental variables were mainly related to regeneration of different plant groups (short and long-lived early and late-seral tree species) and C. culeou abundance in areas with and without topsoil removal. 4.Topsoil removal improved the regeneration of early-seral tree species and constrained C. culeou. In areas without topsoil scarification, higher abundances of C. culeou were reflected in a higher transmitted radiation and litter cover. In these areas, the presence of early-seral tree species was related to higher soil water content and transmitted radiation. However, topsoil removal altered these response patterns for early-seral trees. For instance, the interaction between higher soil water content and more exposed mineral soil was reflected in a higher likelihood of finding early-seral tree seedlings. 5.Synthesis and applications. Topsoil removal was a successful restoration tool for overcoming arrested succession in Nothofagus old-growth forests in the Chilean Andes by encouraging the regeneration of early-seral trees in high-graded forests. Contrasting environmental conditions of pre- and post-topsoil removal allowed insights into the processes and mechanisms responsible for forests with arrested succession and for succession progression. This understanding provides guidance regarding the range of conditions under which topsoil removal can be used as a successful restoration practice.
Data from: Artificial bat roosts did not accelerate forest regeneration in abandoned pastures in southern Costa Rica
Artificial roosts have been proposed as a tool for augmenting bat populations and catalyzing tropical forest regeneration. In the best case scenario, roosts would attract seed-carrying bats (Family Phyllostomidae) into degraded pastures and form nucleating patches of native vegetation. We tested this scenario by monitoring 48 artificial roosts in pastures and adjacent forest fragments in southern Costa Rica over 2 years. Half of the pasture roosts were exposed to direct sunlight and half were affixed to 4-m living stakes of Erythrina poeppigiana (Walp.) O.F. Cook that provided shade. After 2 years, 94% of roosts in forest and 40% of roosts in pasture had been used by bats at least once – primarily for nocturnal feeding. Maximum daily temperature inside of roosts was the best microclimatic predictor of bat visitation. We identified at least five species of bats that visited roosts, including two frugivores (Carollia and Glossophaga spp.). Bat-mediated seed dispersal increased with the number of frugivorous bat detections at roosts, but seedling recruitment did not increase with either bat detections or seed abundance over a 2-year period. Given that bats rarely used roosts in pastures, and bat visitation did not increase seedling recruitment, our data suggest that artificial bat roosts did not accelerate forest regeneration in abandoned, premontane pastures in southern Costa Rica. This method could be refined by investigating alternative roost designs, barriers to seedling recruitment below roosts, improvement of roost microclimatic conditions in pastures, and ability of bats to detect roosts in different habitats.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.