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68 results for “foundational species”
Cascading impacts of earthquakes and extreme heatwaves have destroyed populations of an iconic marine foundation species
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High temperature frequently increases facilitation between aquatic foundation species: A global meta-analysis of interaction experiments between angiosperms, seaweeds, and bivalves
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Data from: Disentangling the heritable and plastic components of the competitive and facilitative effects of an alpine foundation species
Differences in effects between phenotypes of foundation species on subordinate species have been reported, but no study has separated their heritable and plastic components. In a subalpine community of the French Pyrenees, we observed two phenotypes of Festuca gautieri: tight cushions in dry convex outcrops with few subordinate species, and loose cushions in wet concave slopes with many subordinate species, suggesting differences in effects of the two phenotypes on subordinates. Using two reciprocal transplantation gardens, we studied the responses of the two phenotypes to changes in environmental conditions, thus assessing the contribution of heritability and plasticity to the phenotypic variation. Using a target cross-transplantation experiment, we assessed the plasticity and heritability bases of their contrasting effects. We also quantified the recolonisation of resident plants within the reciprocally transplanted cushions. We found that morphological differences between cushions had both heritability and plasticity bases. The two competition experiments showed heritable increase in competitive effects from loose to tight cushions. This was counteracted by plasticity effects, which decreased competition from the benign to the stressful garden. Synthesis. We conclude that heritable effects overcome plasticity effects resulting in higher diversity in the loose phenotype from the benign habitats.
Local adaptation in the Patagonian foundation tree species Nothofagus pumilio
<p><strong>Npumilio_specific_candidate_genes.xlsx </strong></p><ul><li>Study-specific candidate genes. For annotation information on the 1,789 candidate genes from orthogroups, see Milesi at al 2023 (https://doi.org/10.1101/2023.01.05.522822 and Supplemental Tables S12-S14).</li><li>Contains contig, Uniprot-TAIR code and original species, and reason for inclusion in the candidate list (e.g. upregulated or downregulated in the heat stress-transcriptome study (https://doi.org/10.1371/journal.pone.0246615), or of interest for wood growth)</li><li>The list includes some duplicate contigs that are contained in the candidate gene set; they were left in for the "Reason" information</li></ul><p><strong>N_pumilio_06Nov2019_probe_coverage.txt</strong></p><ul><li>Probe design file as provided by IGA Technology Services</li></ul><p>All called SNP variants. Data for 502 individual tree samples are included: 496 adult trees + 6 replicates.</p><ul><li><strong>variants-gatk_haplotypecaller_SNP_raw.vcf.gz</strong> are raw called variants.</li><li><strong>variants-gatk_haplotypecaller_SNP.vcf.gz</strong> are coarsely quality-filtered and are the starting datasets for our downstream analyses.</li></ul><p><strong>Npumilio_IDs_vcforder_all_info.xlsx</strong></p><ul><li>Metadata for all samples in the .vcf files (in the same order), including site name, geographic coordinates and elevation</li></ul><p><strong>Npumilio_orthogroups.csv</strong></p><ul><li>Orthogroups, TAIR codes, and best-hit Nothofagus contigs for cross-referencing with orthogroup candidate gene set (Milesi at al 2023 (https://doi.org/10.1101/2023.01.05.522822 and Supplemental Tables S12-S14)).</li></ul><p> </p>
Effects of marine heatwaves on the photobiology of three kelp foundation species near their southernmost limit in the Northeastern Pacific
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Data from: Disentangling the heritable and plastic components of the competitive and facilitative effects of an alpine foundation species
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Full data for: Predators, prey or temperature? Mechanisms driving niche use of a foundation plant species by specialist lizards
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Data from: Animal personality in a foundation species drives community divergence and collapse in the wild
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.