Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
409
datasets available to search
ShareScore release 0.9.0
Dataset results
409 results for “genome organization”
CTCF chromatin residence time controls 3D genome organization, gene expression and DNA methylation in pluripotent cells
GEO Series GSE154009. Mus musculus. 38 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
A cohesin cancer mutation reveals a role for the hinge domain in genome organization and gene expression [RNA-seq]
GEO Series GSE153575. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Rad21 is the core subunit of cohesin complex in directing genome organization
GEO Series GSE183186. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Suppression of liquid-liquid phase separation by 1,6-hexanediol partially compromises the 3D genome organization in living cells
GEO Series GSE138543. Homo sapiens. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Comparing 3D genome organization in multiple species using Phylo-HMRF
GEO Series GSE128800. Pan troglodytes; Gorilla gorilla; Pan paniscus. 3 samples. Type: Other.
Doxorubicin Changes the Spatial Organization of the Genome around Active Promoters
GEO Series GSE215321. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Transcriptional programs of cell identity and p53-induced stress responses are associated with distinctive features of spatial genome organization [Micro-C]
GEO Series GSE278978. Homo sapiens. 40 samples. Type: Other.
Whole genome expression analysis of a skin biopsy from an individual with multi-organ epithelial inflammation associated with an inherited loss-of-function mutation in EGFR
GEO Series GSE54162. Homo sapiens. 5 samples. Type: Expression profiling by array.
3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [RNASeq_MEC]
GEO Series GSE227748. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
SATB2 organizes the 3D genome architecture of cognition in cortical neurons [Hi-C]
GEO Series GSE222606. Mus musculus. 12 samples. Type: Other.
Global organization of the B cell genome by the transcription factor Pax5
GEO Series GSE99163. Mus musculus. 33 samples. Type: Expression profiling by high throughput sequencing; Other.
Wash regulates lamin-dependent nuclear genome organization [Chromatin Accessibility]
GEO Series GSE59852. Drosophila melanogaster. 9 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Allele-specific control of replication timing and genome organization during development [Repli-Seq]
GEO Series GSE114747. Mus musculus. 54 samples. Type: Other.
3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [MEC_Omni-C]
GEO Series GSE228930. Mus musculus. 6 samples. Type: Other.
Systematic analysis of circadian gene expression mediated by epigenetic modification and 3D genome organization in Rice [RNA-Seq]
GEO Series GSE213093. Oryza sativa Indica Group. 36 samples. Type: Expression profiling by high throughput sequencing.
Histone deacetylation and cytosine methylation are required for the normal compartmentalization of heterochromatin in the genome organization of Neurospora crassa [Hi-C]
GEO Series GSE232934. Neurospora crassa. 12 samples. Type: Other.
Identification of new regulators of the three dimensional Polycomb organization by a microscopy-based genome-wide RNAi screen
GEO Series GSE55303. Drosophila melanogaster. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Comparative analysis of transcriptome profiles reveals organ-dependent (Intestine and Tail) genomic and nongenomic actions of thyroid hormone in Xenopus tropicalis tadpoles
GEO Series GSE210456. Xenopus tropicalis. 24 samples. Type: Expression profiling by high throughput sequencing.
Genome organization regulates nuclear pore complex formation and promotes differentiation during Drosophila oogenesis [RNA-seq]
GEO Series GSE248057. Drosophila melanogaster. 8 samples. Type: Expression profiling by high throughput sequencing.
Global analyses of cell cycle dependent changes in fission yeast genome organization reveal correlations with alterations in transcript levels [GCC]
GEO Series GSE52283. Schizosaccharomyces pombe. 6 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.