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137 results for “non-indigenous species”
Figure 6 in New records of non-indigenous Branchiomma and Parasabella species (Sabellidae: Annelida) in South Australia highlight the continuing challenges for sabellid taxonomy
Figure 6. Parasabella sp. 1, live specimen. (a) whole body; (b) detail of radiolar crown. AM W.49870.001. AM: Australian Museum voucher number.
Figure 7 in New records of non-indigenous Branchiomma and Parasabella species (Sabellidae: Annelida) in South Australia highlight the continuing challenges for sabellid taxonomy
Figure 7. Parasabella sp. 1, drawing of cross section of radiole showing supporting vacuolated cells (with nuclei). Upper side of drawing shows outer margin of radiole, with columnar epithelial cells indicated in grey. Pinnules shown at the base of the image, with blood vessel in black.
Figure 4 in New records of non-indigenous Branchiomma and Parasabella species (Sabellidae: Annelida) in South Australia highlight the continuing challenges for sabellid taxonomy
Figure 4. Branchiomma sp. B, scanning electron microscope images. (a) anterior thoracic chaetigers and radiolar crown, dorsal view. (b) same, ventral view. (c) thoracic chaetigers showing ventral shield in contact with neuropodial tori. (d) same, lateral view. (e) detail of unpaired basal stylodes, ventral view. (f) detail of radiolar appendages of dorsal lips. (g) radioles with paired strap-like macrostylodes. (h) mid-thoracic chaetae, narrowly hooded. (i) row of mid-thoracic uncini. (j) detail of mid-thoracic uncini showing 2–3 rows of teeth. (k) abdominal uncini showing 3 rows of teeth. a, b, f–h: AM W.49867.001; d, k: AM W.49868.001. c, e, i, j: AM W.49869.001. AM: Australian Museum voucher number.
Figure 5 in New records of non-indigenous Branchiomma and Parasabella species (Sabellidae: Annelida) in South Australia highlight the continuing challenges for sabellid taxonomy
Figure 5. Branchiomma sp. B. (a) micrograph of preserved specimens detailing thoracic uncini; (b) from micrographs, line drawing detailing shape of thoracic uncini. AM W.49869.001. AM: Australian Museum voucher number.
Figure 8 in New records of non-indigenous Branchiomma and Parasabella species (Sabellidae: Annelida) in South Australia highlight the continuing challenges for sabellid taxonomy
Figure 8. Parasabella sp. 1, scanning electron microscope images. (a) anterior thoracic chaetigers and base of radiolar crown, dorsal view. (b) same, lateral view. (c) same, ventral view, with ventral shields in contact with neuropodial tori. (d) collar chaetae, narrowly hooded. (e) mid-thoracic chaetae, narrowly hooded superior notochaete and broadly hooded inferior. (f) detail of mid-thoracic uncini. (g) mid-thoracic chaetae row with companion chaetae. (h) detail of companion chaetae. (i) complete row of uncini and chaetae in abdominal notopodia. (j) detail of abdominal uncini. a: AM W.49871.001. b–j: AM W.49870.001. AM: Australian Museum voucher number.
Figure 2 in New records of non-indigenous Branchiomma and Parasabella species (Sabellidae: Annelida) in South Australia highlight the continuing challenges for sabellid taxonomy
Figure 2. Maximum likelihood topologies. (a) of internal transcribed spacer fragment (ITS1) of Branchiomma and related species; (b) A, of ITS1 of Parasabella and related species; (c) Cytochrome oxidase I (cox1). Bootstrap supports shown on nodes if>50. Species clades have been collapsed for simplification. SA: South Australia. Scale bar: average of nucleotide substitutions per site.
Figure 1 in New records of non-indigenous Branchiomma and Parasabella species (Sabellidae: Annelida) in South Australia highlight the continuing challenges for sabellid taxonomy
Figure 1. Idealised drawings of morphological features showing measurements taken for species comparison. (a) chaeta (A, shaft width; B, hood maximum width; C, hood total length). (b) uncini (D, length of main fang; E, length of neck; F, breast length; G, distance of breast to main fang; H, length of handle).
Figure 3 in New records of non-indigenous Branchiomma and Parasabella species (Sabellidae: Annelida) in South Australia highlight the continuing challenges for sabellid taxonomy
Figure 3. Branchiomma sp. B, live specimen. (a) AM W.49868.001, anterior ventral view of thorax and radiolar crown; (b) AM W.49869.001, detail of radiolar pigmentation and macrostylodes. AM: Australian Museum voucher number.
Fish eDNA detections in ports mirror fishing fleet activities and highlight the spread of non-indigenous species in the Mediterranean Sea. Environmental DNA Metabarcoding DATASET
<p>Environmental DNA metabarcoding data set. Environmental samples were collected in 2018 (one sample replicate of 2L surface water) and 2019 (four replicates of 1 L surface water) from several Mediterranean ports and data were generated using 12S rRNA and mitochondrial COI. For each sampling campaign (2018 and 2019) and marker two sheets are presented (with the same numeration): the first one represents all the ASV/MOTUs after the bioinformatics pipelines; the second one shows the curated assignment. The last two sheets are the OTU tables (presence-absence).</p>
Poleward expanding species and non-indigenous species along the Italian, Croatian and Montenegrin coasts: a large‐scale survey based on online questionnaires.
<p>The following dataset contains information from an online survey that was carried out by three different research institutes: the Institute for Environmental Protection and Italy (ISPRA), the IRBIM- CNR, Institute of Biological Resources and Marine Biotechnologies, National Research Council, Ancona, Italy and the Institute of Oceanography and Fisheries, Split, Croatia. The survey was implemented on Google Forms and it was advertised on Facebook groups about recreational spearfishing and sea angling; some questionnaires were also snowballed in the community of recreational spearfishers and sea anglers, on Twitter. Respondents were from Italy, Croatia and Montenegro. The questionnaire was translated in Italian and Croatian. Overall, the questionnaire took approximately 10 minutes to complete.</p>
Supplementary material 1 from: Duarte S, Vieira PE, Costa FO (2020) Assessment of species gaps in DNA barcode libraries of non-indigenous species (NIS) occurring in European coastal regions. Metabarcoding and Metagenomics 4: e55162. https://doi.org/10.3897/mbmg.4.55162
Supplementary figures and tables used to analyse the data
Figure 38 from: Albano PG, Steger J, Bakker PAJ, Bogi C, Bošnjak M, Guy-Haim T, Huseyinoglu MF, LaFollette PI, Lubinevsky H, Mulas M, Stockinger M, Azzarone M, Sabelli B (2021) Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification. ZooKeys 1010: 1-95. https://doi.org/10.3897/zookeys.1010.58759
Figure 38 Pegophysema cf. philippiana (Reeve, 1850), Palmachim, Israel, Shafdan project (sample 24(B)): right valve outer (A) and dorsal (B) views. The pink hue is due to staining with eosin solution. Photograph courtesy S. Bartolini. Scale bar: 5 mm.
Figure 40 from: Albano PG, Steger J, Bakker PAJ, Bogi C, Bošnjak M, Guy-Haim T, Huseyinoglu MF, LaFollette PI, Lubinevsky H, Mulas M, Stockinger M, Azzarone M, Sabelli B (2021) Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification. ZooKeys 1010: 1-95. https://doi.org/10.3897/zookeys.1010.58759
Figure 40 Nudiscintilla cf. glabra Lützen & Nielsen, 2005 (sensu Mifsud and Ovalis 2012) A–E Nahariyya, Israel, HELM project (sample D7): outer (A) and inner (B) views, detail of hinge (C) and hinge in dorsal view (D, E) of right valve F, G Palmachim, Israel, HELM project (sample H17): right (F) and left (G) valve outer views. Scale bars: 3 mm (A, B); 0.5 mm (C, D); 0.2 mm (E); 1 mm (F, G).
Figure 37 from: Albano PG, Steger J, Bakker PAJ, Bogi C, Bošnjak M, Guy-Haim T, Huseyinoglu MF, LaFollette PI, Lubinevsky H, Mulas M, Stockinger M, Azzarone M, Sabelli B (2021) Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification. ZooKeys 1010: 1-95. https://doi.org/10.3897/zookeys.1010.58759
Figure 37 Isognomon aff. australica (Reeve, 1858) (sensu Angelidis and Polyzoulis 2018) A, B, D, E Esentepe, Cyprus (sample NCY3H): left valve outer (A) and inner (B) views, right valve inner (D) and outer (E) views C, F Plakias, Crete (sample Rh.05_4M): left (C) and right (F) valve outer views. Scale bars: 2 mm.
Figure 6 from: Albano PG, Steger J, Bakker PAJ, Bogi C, Bošnjak M, Guy-Haim T, Huseyinoglu MF, LaFollette PI, Lubinevsky H, Mulas M, Stockinger M, Azzarone M, Sabelli B (2021) Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification. ZooKeys 1010: 1-95. https://doi.org/10.3897/zookeys.1010.58759
Figure 6 Coriophora lessepsiana Albano, Bakker & Sabelli, sp. nov. A–J holotype, NHMW-MO-113282, dive site "Blue Hole", Dahab, Sinai, Egypt: front (A, B), side (C, D) and back (E) views, nucleus (F), protoconch (G, H) and peristome (I, J) K, M paratype 1, OLML LIEV 2019/70/1, dive site "Tigerhouse", Dahab, Sinai, Egypt: front (K), side (L) and back (M) views. N, ONHMW-MO-112930/LM/0169, west of Rosh HaNikra Islands, Israel (Mediterranean), HELM project (sample S52_2M): front (N) and side (O) views. Scale bars: 0.5 mm (A–E, K–O); 0.1 mm (F); 0.2 mm (G, H); 0.3 mm (I, J).
Figure 43 from: Albano PG, Steger J, Bakker PAJ, Bogi C, Bošnjak M, Guy-Haim T, Huseyinoglu MF, LaFollette PI, Lubinevsky H, Mulas M, Stockinger M, Azzarone M, Sabelli B (2021) Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification. ZooKeys 1010: 1-95. https://doi.org/10.3897/zookeys.1010.58759
Figure 43 Iacra seychellarum (A. Adams, 1856), Kos Island, Greece, RMNH.MOL.342632: left valve outer (A) and inner (B) views, hinge (C). Photograph courtesy T. van Haaren. Scale bar: 2 mm (A, B); 1 mm (C).
Figure 32 from: Albano PG, Steger J, Bakker PAJ, Bogi C, Bošnjak M, Guy-Haim T, Huseyinoglu MF, LaFollette PI, Lubinevsky H, Mulas M, Stockinger M, Azzarone M, Sabelli B (2021) Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification. ZooKeys 1010: 1-95. https://doi.org/10.3897/zookeys.1010.58759
Figure 32 Arcuatula perfragilis (Dunker, 1857), Palmachim, Israel, Shafdan project. Left valve outer view. The pink hue is due to staining with eosin solution. Photograph courtesy S. Bartolini. Scale bar: 2 mm.
Figure 3 from: Albano PG, Steger J, Bakker PAJ, Bogi C, Bošnjak M, Guy-Haim T, Huseyinoglu MF, LaFollette PI, Lubinevsky H, Mulas M, Stockinger M, Azzarone M, Sabelli B (2021) Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification. ZooKeys 1010: 1-95. https://doi.org/10.3897/zookeys.1010.58759
Figure 3 Skeneidae indet., Akko, Israel: apical (A, B), front (C, F), side (D, E), umbilical (G, H) and back (I) views, protoconch (J). Scale bars: 0.5 mm (A–I); 0.1 mm (J).
Figure 31 from: Albano PG, Steger J, Bakker PAJ, Bogi C, Bošnjak M, Guy-Haim T, Huseyinoglu MF, LaFollette PI, Lubinevsky H, Mulas M, Stockinger M, Azzarone M, Sabelli B (2021) Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification. ZooKeys 1010: 1-95. https://doi.org/10.3897/zookeys.1010.58759
Figure 31 Atys angustatus E.A. Smith, 1872, Plakias, Crete, Greece (sample Rh.15_5M): front view. Scale bar: 0.5 mm.
Figure 29 from: Albano PG, Steger J, Bakker PAJ, Bogi C, Bošnjak M, Guy-Haim T, Huseyinoglu MF, LaFollette PI, Lubinevsky H, Mulas M, Stockinger M, Azzarone M, Sabelli B (2021) Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification. ZooKeys 1010: 1-95. https://doi.org/10.3897/zookeys.1010.58759
Figure 29 Turbonilla funiculata de Folin, 1868, west of Rosh HaNikra Islands, Israel, HELM project (sample S52_2F): front (A, B) and back (C, D) views, detail of the sculpture on the base (E), aperture (F), detail of the sculpture on the back of the third whorl (G), apical (H) and side (I) views of the protoconch. Scale bars: 0.5 mm (A–D); 0.1 mm (E, H, I); 0.2 mm (F, G).
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.