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121
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ShareScore release 0.7.1
Dataset results
121 results for “orthology”
Global gene expression profiling in PPAR-γ agonist-treated kidneys in an orthologous rat model of human autosomal recessive polycystic kidney disease
GEO Series GSE35167. Rattus norvegicus. 2 samples. Type: Expression profiling by array.
The C. elegans ortholog of TDP-43 regulates the chromatin localization of the heterochromatin protein 1 homolog, HPL-2
GEO Series GSE100829. Caenorhabditis elegans. 21 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Divergence of regulatory networks governed by the orthologous transcription factors FLC and PEP1 in Brassicaceae species.
GEO Series GSE89889. Arabidopsis thaliana; Arabis alpina. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Effect of lutein on worms lacking complex I subunit nuo-5 (ortholog of human NDUFS1)
GEO Series GSE144574. Caenorhabditis elegans. 12 samples. Type: Expression profiling by array.
Global gene expression analysis in murine iPS cells derived with mouse, chick and zebrafish Nanog orthologs
GEO Series GSE32650. Mus musculus. 6 samples. Type: Expression profiling by array.
scRNAseq of CNS-infiltrating T cells from EAE-affected wt C57BL6 mice or littermate controls heterozygous or homozygous for a gene variant orthologous for the human polymorphism HDAC7 R166H
GEO Series GSE215819. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
A Cas12a ortholog with stringent PAM recognition followed by low off-target editing rates for genome editing
GEO Series GSE146420. Homo sapiens; synthetic construct. 195 samples. Type: Other.
RdDM-independent de novo and heterochromatin DNA methylation by plant CMT and DNMT3 orthologs [Bisulfite-Seq]
GEO Series GSE118153. Physcomitrium patens. 10 samples. Type: Methylation profiling by high throughput sequencing.
Ribonucleotides embedded in genomic DNA of Aicardi-Goutières syndrome (AGS)-orthologous mutants of Saccharomyces cerevisiae using ribose-seq protocol
GEO Series GSE240399. Saccharomyces cerevisiae. 21 samples. Type: Other.
Global gene expression analysis in murine iPS cells derived with mouse and human Nanog orthologs
GEO Series GSE32464. Mus musculus. 12 samples. Type: Expression profiling by array.
RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM® genes for hereditary disorders of hearing and balance
GEO Series GSE69701. Xenopus laevis. 1 samples. Type: Expression profiling by high throughput sequencing.
Mice with targeted deletion of Nxf7, the murine ortholog of the clinically implicated NXF5, display impaired hippocampal learning and neuroplasticity
GEO Series GSE29541. Mus musculus. 8 samples. Type: Expression profiling by array.
Expression profile by RNA-seq of wild type or Caenorhabditis elegans mutant for the Werner syndrome gene ortholog treated with or without vitamin C
GEO Series GSE54173. Caenorhabditis elegans. 12 samples. Type: Expression profiling by high throughput sequencing.
An orthologous epigenetic gene expression signature derived from differentiating embryonic stem cells identifies regulators of cardiogenesis
GEO Series GSE69618. Homo sapiens. 34 samples. Type: Expression profiling by high throughput sequencing.
Comparing DNA binding specificities between orthologous Pho4 transcription factors
GEO Series GSE293355. Nakaseomyces glabratus; Saccharomyces cerevisiae; synthetic construct. 2 samples. Type: Other.
The CHARGE syndrome ortholog CHD-7 regulates TGF-b pathways in C. elegans
GEO Series GSE199192. Caenorhabditis elegans. 10 samples. Type: Expression profiling by high throughput sequencing.
New functions of pirin proteins and a 2-ketoglutarate: Ferredoxin oxidoreductase ortholog in Bacteroides fragilis metabolism and their impact on antimicrobial susceptibility to metronidazole and amixi
GEO Series GSE241210. Bacteroides fragilis 638R. 12 samples. Type: Expression profiling by array.
Orthology and disorder prediction of metazoan SRRM2, SRRM1, SON, Coilin, Pinin, PRPF8 and RBM25
<p>Orthology and disorder prediction of metazoan SRRM2, SRRM1, SON, Coilin, Pinin, PRPF8 and RBM25 for length distribution and disorder prediction analysis used in the publication: https://doi.org/10.1101/2020.06.19.160762</p> <p>Code: https://github.molgen.mpg.de/malszycki/SON_SRRM2_speckles</p> <p> </p> <p>File description:</p> <ul> <li>*_NCBI_orthologs.csv - table containing NCBI IDs of proteins in NCBI ortholog resource for each gene</li> <li>*_NCBI.gb - dataset downloaded using NCBI ortholog prediction in genebank format</li> <li>Uniprot_metazoa.tar.gz - Uniprot proteomes used for Orthofinder orthology prediction</li> <li>*_OrthoFinder_group.txt - NCBI iD's of orthofinder results</li> <li>*_final.gb - final merged tataset (Orthofinder results + NCBI ortholog)</li> <li>*_unique_final.gb - final dataset with removed redundant sequences</li> <li>Orthogroups.tsv - tab separated file with groups of orthologous sequences used to generate *_OrthoFinder_group.txt files by mapping results to NCBI RefSeq</li> <li> IUPred.tar.gz - IUPred disorder prediction results for all proteins</li> <li>MobiDB.tar.gz - MobiDB disorder prediction results for all proteins</li> </ul>
CGP orthology clustering
<p>Orthology clustering set used on the Caenorhabditis Genomes Project (CGP) website (caenorhabditis.org). </p> <p>This dataset was generated using longest-isoform-filtered proteins from sequenced <em>Caenorhabditis </em>species and Orthofinder (see https://github.com/davidemms/OrthoFinder). </p>
Global transcriptional Analysis of Yap/Yki Orthologs in Drosophila melanogaster by RNA Seq
GEO Series GSE54600. Drosophila melanogaster. 15 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.