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82 results for “phylogram”
FIGURE 1. Maximum Likelihood phylogram obtained from the general nrITS and RPB2 in Inocybe cervenianensis (Agaricales, Inocybaceae), a new species in the I. flavoalbida clade from Italy
FIGURE 1. Maximum Likelihood phylogram obtained from the general nrITS and RPB2 sequence alignment of Inocybe spp. Mallocybe arthrocystis and Mallocybe leucoblema were used as outgroup taxa. Only MLB values ≥70% and BPP values ≥0.95 are given above clade branches. Newly sequenced collections are in bold. For each collection, the specific epithet (as present in GenBank), voucher, GenBank accession numbers of the RPB2/ITS sequences are reported. The /- notation indicates the sequence as missing for that collection.
Figure 1. Bayesian consensus phylogram for 167 in Phylogenetic position of the poorly known montane cascade frog Amolops monticola (Ranidae) and description of a new closely related species from Northeast India
Figure 1. Bayesian consensus phylogram for 167 taxa representing members of the genus Amolops and five outgroup species, based on 2001 bp of concatenated mitochondrial DNA (16S, COI, and ND2 genes). Voucher numbers and associated details are referenced in Table S1. Bayesian posterior probabilities (BPP) and RAxML bootstrap support (BS) values>50% are denoted above and below the branches, or separated by an oblique (/) mark, respectively. Black vertical bars beside the terminal nodes indicate Amolops species recognised based on Bayesian and ML inferences; grey bars and open rectangles indicate putative species delimited in the bPTP analysis with support values of>90% or <90%, respectively. The genus comprises eight major species groups following Wu et al. (2020), as indicated with coloured bars on the extreme right and corresponding circles on the internal and terminal nodes. Four subgroups are observed within the focal Amolops monticola group. Illustrations representing species groups were prepared based on published photographs.
FIGURE 1. Phylogram inferred form a in Sphaerosporella microspora (Pyronemataceae, Pezizales), a novel species from Southern China
FIGURE 1. Phylogram inferred form a two-locus (ITS+LSU) dataset using RAxML. BS≥75% and pp≥0.95 are indicated above or below the branches as RAxML BS/PP.
FIGURE 1. Phylogram inferred from a in Buchwaldoboletus xylophilus and Phlebopus portentosus, two non-ectomycorrhizal boletes from tropical China
FIGURE 1. Phylogram inferred from a four-locus (rDNA 28S and ITS regions and TEF1 and RPB2) dataset using RAxML. BS ≥ 50 % and PP ≥ 0.95 are indicated above or below the branches as RAxML BS/PP. SE = southeast; SW = southwest; NE = northeast.
FIGURE 2. Phylogram inferred from a in Buchwaldoboletus xylophilus and Phlebopus portentosus, two non-ectomycorrhizal boletes from tropical China
FIGURE 2. Phylogram inferred from a three-locus (rDNA 28S and ITS regions and TEF1) dataset using RAxML. BS ≥ 50 % and PP ≥ 0.95 are indicated above or below the branches as RAxML BS/PP. SW = southwest.
FIGURE. Phylogram of Panus generated from Maximum likelihood analysis of ITS sequence data. Lentinus crinitus (MK408650) was selected as the outgroup taxon. Maximum likelihood bootstrap values greater than 60% are indicated above the nodes. The new record Panus similis (HKAS 121668) is in black bold. in Yunnan-Guizhou Plateau: a mycological hotspot
FIGURE. Phylogram of Panus generated from Maximum likelihood analysis of ITS sequence data. Lentinus crinitus (MK408650) was selected as the outgroup taxon. Maximum likelihood bootstrap values greater than 60% are indicated above the nodes. The new record Panus similis (HKAS 121668) is in black bold.
FIGURE 1. Phylogram generated from a in Neohormodochis septispora gen. et sp. nov. (Stictidaceae) from Yunnan Province, China
FIGURE 1. Phylogram generated from a maximum likelihood analysis based on concatenated ITS, LSU, mtSSU and RPB2 sequence dataset. Bootstrap support (MLBS) equal to or greater than 60% and Bayesian posterior probabilities (PP) equal to or higher than 0.95 are given above the nodes. Generic names are noted on the right side. Newly generated sequence are highlighted in blue bold font.
FIGURE 2. Phylogram generated from maximum likelihood analysis resulting from the combined ITS, tef1 and tub2 in Interesting Botryosphaeria (Botryosphaeriaceae) associated with Magnolia species in Thailand: Additions of two new host records with their lifestyles
FIGURE 2. Phylogram generated from maximum likelihood analysis resulting from the combined ITS, tef1 and tub2 sequence dataset. Related sequences of Botryosphaeria were obtained from Zhang et al. (2021). Cophinforma eucalypti (MFLUCC 11-0425) was selected as the outgroup taxon. Bootstrap values for maximum likelihood equal to or greater than 60% and bayesian posterior probabilities equal to or greater than 0.95 are placed above the branches. The newly generated sequences are indicated in red. Type and ex-type strains are in black bold. Species names and strain accession numbers are followed by the lifestyle (orange), the isolation source or host species (green) and country of origin (blue). The accepted species names (according to Zhang et al. 2021) are indicated to the left of each clade. The scale bar represents the expected number of changes per site. The tree was rooted to Cophinforma eucalypti (MFLUCC 11-0425). END: Endophytic; PAT: Pathogenic; SAP: Saprobic; UNK: Unknown.
Figure 12. Maximum likelihood phylogram computed for 18S in Litthabitellidae: a new family of the Truncatelloidea (Mollusca: Caenogastropoda)
Figure 12. Maximum likelihood phylogram computed for 18S sequences; bootstrap support and Bayesian posterior probabilities are shown when bootstrap supports>65%.
Figure 13. Maximum likelihood phylogram computed for H3 in Litthabitellidae: a new family of the Truncatelloidea (Mollusca: Caenogastropoda)
Figure 13. Maximum likelihood phylogram computed for H3 sequences; bootstrap support and Bayesian posterior probabilities are shown when bootstrap supports>65%.
FIGURE 1. MrBayes phylogram inferred from incomplete internal transcribed spacer rDNA sequence data. Choiromyces meandriformis and C in A new species of Tuber (Tuberaceae, Pezizales) from Inner Mongolia, China
FIGURE 1. MrBayes phylogram inferred from incomplete internal transcribed spacer rDNA sequence data. Choiromyces meandriformis and C. alveolatus were used to root the tree. The same outcome was shown via Maximum Likelihood. On each branch, Bayesian posterior probability values (PP> 0.75) and maximum likelihood bootstrap values (MLbs> 75%) are displayed. The new species sequences are denoted by an asterisk (*). Different colours are used to represent the six primary Tuber phylogroups. Our findings establish T. mongolicum sp. nov. based on phylogenetic studies as well as morphological observations.
text-fig. 56. Phylogram of theropod relationships, based on the cladogram in ext-figure 55. in The interrelationships and evolution of basal theropod dinosaurs
text-fig. 56. Phylogram of theropod relationships, based on the cladogram in ext-figure 55.
Fig. 1. Phylogram constructed for 31 in Paramecium tredecaurelia: A Unique Non-Polymorphic Species of the P. aurelia spp. Complex (Oligohymenophorea, Ciliophora)
Fig. 1. Phylogram constructed for 31 strains of the P. aurelia species complex (including the 5 studied strains of P. tredecaurelia) and two strains of P. multimicronucleatum used as an outgroup. The trees were constructed on the basis of a comparison of sequences from the ITS1- 5.8S-ITS2-5'LSU rDNA fragment (A), COI (B), and CytB (C) using the Bayesian inference method. Bootstrap values for neighbor joining, maximum parsimony analysis, maximum likelihood, and posterior probabilities for Bayesian inference are shown. Bootstrap values smaller than 50% (posterior probabilities <0.50) are not shown. Dashes represent no bootstrap or posterior value at a given node. All positions containing gaps and missing data were eliminated. Phylogenetic analyses were conducted using MEGA 5.0 (NJ/MP/ML) and MrBayes 3.1.2 (BI).
Fig. 1. A Neighbor Joining tree phylogram comparing 316 in Zoonotic and vector-borne pathogens in tigers from a wildlife safari park, Italy
Fig. 1. A Neighbor Joining tree phylogram comparing 316 bp 18S rRNA DNA Hepatozoon canis sequences from tigers, herein in bold, to other Hepatozoon spp. GenBank deposited sequences with Babesia canis as outgroup. Sequences are presented by GenBank accession number, host species and country of origin.
Figure 3. Bayesian phylogram for cytochrome b sequences. Upper Sacramento River basin haplotypes are distributed among clades A–D in Extensive diversification of pebblesnails (Lithoglyphidae: Fluminicola) in the upper Sacramento River basin, northwestern USA
Figure 3. Bayesian phylogram for cytochrome b sequences. Upper Sacramento River basin haplotypes are distributed among clades A–D. Posterior probability values ≥ 90% are shown. Upper Sacramento River basin lineages newly discovered in this study are highlighted by the larger font. Specimen codes are from Table 1.
Fig. 3. Bayesian phylogram for 274 in A systematic revision of the genus Juga from fresh waters of the Pacific Northwest, USA (Cerithioidea, Semisulcospiridae)
Fig. 3. Bayesian phylogram for 274 individuals based on a concatenated COI, 16S and ITS1 dataset, with nonconserved regions of the ITS1 dataset removed. Terminals collapsed and outgroups trimmed for simplicity. Scale bar indicates number of nucleotide substitutions per site. Modified from Strong & Whelan (2019). Shells shown to same scale.
DNA matrix, phylogram and chronogram of Pepsini species
<p>This dataset submission consists of a DNA matrix and two tree files. The phylogeny file of UCE loci for 39 taxa was required to construct a Maximum Likelihood tree. The tree file was needed to examine the topology and the topology was used to examine the limits of two taxonomically challenging genera within the tribe Pepsini, <em>Cryptocheilus</em> and <em>Heterodontonyx</em>. The time-calibrated tree was built with MCMCTree program to estimate the divergence pattern and timing of the group. </p>
DNA matrix, phylogram and chronogram of Pepsini species
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FIG. 2. Phylogram generated from a in A new species in the Hipposideros bicolor group (Chiroptera: Hipposideridae) from Peninsular Malaysia
FIG. 2. Phylogram generated from a Bayesian analysis using the GTR+G+I model of nucleotide evolution. Branch lengths are proportional to the number of substitutions as indicated by the scale bar. Tip labels for the different species of H. bicolor include the capture site (Fig. 1) followed by the haplotype (Figs. 3 and 4). Posterior probabilities (pp) are next to the nodes
FIGURE 1. Phylogram obtained from a in Bazzania calypogeoides (Marchantiophyta)-a peculiar new taxon from Eastern Hengduan (China)
FIGURE 1. Phylogram obtained from a Bayesian analysis of the genus Bazzania based on rbcL dataset. Newly obtained specimens are provided with voucher numbers. Bootstrap support values> 50% in ML analysis and Bayesian posterior probabilities (PP)> 0.50 are indicated. Scale bar denotes the number of nucleotide substitutions per site.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.