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80
datasets available to search
ShareScore release 0.9.0
Dataset results
80 results for “single-cell ATAC-seq”
Integrative analysis of single-cell ATAC-seq and RNA-seq using Self-Organizing Maps
GEO Series GSE89285. Mus musculus. 833 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Parallel Bimodal Single-cell Sequencing of Transcriptome and Chromatin Accessibility (Mouse single cell ATAC-seq)
GEO Series GSE113416. Mus musculus. 192 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Parallel Bimodal Single-cell Sequencing of Transcriptome and Chromatin Accessibility (Mouse single cell ATAC-Seq mESCs)
GEO Series GSE148270. Mus musculus. 192 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Rbpj_ATAC-seq]
GEO Series GSE216797. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell joint analysis of DNA oxidative damage and transcriptome [ATAC-seq]
GEO Series GSE268551. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Hematopoiesis under telomeric attrition at the single-cell resolution [ATAC-seq]
GEO Series GSE171220. Homo sapiens; Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [ATAC-seq]
GEO Series GSE267807. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
The Human Testis Cell Atlas via Single-cell RNA-seq (KIT+ spermatogonia ATAC-seq data set)
GEO Series GSE120507. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell 3D genome structure reveals distinct human pluripotent states (ATAC-Seq)
GEO Series GSE260991. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell transcriptome profiling reveals blast cell heterogeneity and identifies novel therapeutic target IKZF2 in t(8;21) acute myeloid leukemia (ATAC-seq)
GEO Series GSE267232. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
An optimized approach for multiplexing single-cell ATAC-seq using oligonucleotide conjugated antibodies
GEO Series GSE227522. Mus musculus. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Profiling chromatin state by single-cell itChIP-seq [ATAC-seq]
GEO Series GSE109760. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell RNA-seq and single-cell ATAC-seq of in vitro polarized mouse Th17 and Th1 cells
GEO Series GSE206175. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Transcript-indexed ATAC-seq reveals paired single-cell T cell receptor identity and chromatin accessibility for precision immune profiling [Ensembl]
GEO Series GSE107223. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcript-indexed ATAC-seq reveals paired single-cell T cell receptor identity and chromatin accessibility for precision immune profiling
GEO Series GSE107817. Homo sapiens. 1360 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcript-indexed ATAC-seq reveals paired single-cell T cell receptor identity and chromatin accessibility for precision immune profiling [single cell]
GEO Series GSE107816. Homo sapiens. 1344 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
TooManyPeaks identifies drug-resistant-specific regulatory elements from single-cell leukemic epigenomes [ATAC-seq]
GEO Series GSE155916. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell transcriptome profiling reveals developmental trajectory and regulatory networks of mouse maxillary prominence [ATAC-seq]
GEO Series GSE161130. Mus musculus. 23 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Identification of epigenetic regulators of fibrotic transformation in cardiac fibroblasts through bulk and single-cell CRISPR screens (ATAC-Seq)
GEO Series GSE261740. Mus musculus. 35 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Identification of epigenetic regulators of fibrotic transformation in cardiac fibroblasts through bulk and single-cell CRISPR screens (ATAC-Seq_2)
GEO Series GSE281868. Homo sapiens; Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.