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Fig. 2a-c in New Tools for Phylogenetic reconstruction using character state trees
Fig. 2a-c: The same character state tree with Camin – Sokal (a) and Matrioshka (b) coding, and (c) as a combination of three subcharacters (factors), each one with two states.
Fig. 1 in New Tools for Phylogenetic reconstruction using character state trees
Fig. 1: Evolution of the ovipositor and the ootheca of Dictyoptera (Insecta) as an example of a relatively complex character state tree (based on data of GRIMALDI & ENGEL 2005 and EHRMANN 2002). Each node of the tree corresponds to an observed character state.
Fig. 11 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 11. Projections of factor 1 (x-axis) and factor 2 (y-axis) in principal component analysis of A, cranial measurements and B, dental measurements of different diminutive species of Miniopterus from Madagascar, all of which were previously considered to be M. manavi, as well as M. petersoni. Loadings of variables on each axis are shown in table 6.
Fig. 10 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 10. Lateral views of skulls and mandibles of Miniopterus spp. from Madagascar: (above, from left to right) M. manavi (FMNH 194074) from the Grotte de Fandanana, near Fandriana; M. griveaudi (FMNH 169712) from near the Andrafiabe Cave, Ankarana; holotype of M. aelleni (FMNH 173067), from the Canyon d'Antsiroandoa, Ankarana; (below, left) holotype of M. brachytragos (FMNH 175840), from the Forêt d'Ambovonomby, Parc National de Namoroka, Forêt d'Ambovonomby; and (below, right) holotype of M. mahafaliensis (FMNH 173197), from near Mitoho Cave, Parc National de Tsimanampetsotsa. (Photograph taken by J. Weinstein, Field Museum image number Z94488_03d.)
Fig. 8 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 8. Dorsal views of skulls of Miniopterus spp. from Madagascar: (above, from left to right) M. manavi (FMNH 194074) from the Grotte de Fandanana, near Fandriana; M. griveaudi (FMNH 169712) from near the Andrafiabe Cave, Ankarana; holotype of M. aelleni (FMNH 173067), from the Canyon d'Antsiroandoa, Ankarana; below, left) holotype of M. brachytragos (FMNH 175840), from the Forêt d'Ambovonomby, Parc National de Namoroka; and (below, right) holotype of M. mahafaliensis (FMNH 173197), from near Mitoho Cave, Parc National de Tsimanampetsotsa. (Photograph taken by J. Weinstein, Field Museum image number Z94488_01d.)
Fig. 7 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 7. Different views of skull and mandible of the holotype of Miniopterus mahafaliensis (FMNH 173197) collected in the Parc National de Tsimanampetsotsa, 6.5 km NE Efoetse, near Mitoho Cave: (above, left) dorsal view of cranium; (above, right) ventral view of cranium; and (below) lateral view of cranium and mandible. (Photograph taken by John Weinstein, Field Museum image number Z94487_05d.)
Fig. 6 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 6. Photograph of living Miniopterus mahafaliensis captured 6.5 km NE Efoetse, near Mitoho Cave, Parc National de Tsimanampetsotsa (FMNH 173191), taken at the same locality as the holotype (FMNH 173197). Note the gray grizzled hair to the ventrum. (Photograph by Harald Schütz.)
Fig. 5 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 5. Different views of skull and mandible of the holotype of Miniopterus brachytragos (FMNH 175840) collected in the Parc National de Namoroka, Forêt d'Ambovonomby, 26 km NW Andranomavo: (above, left) dorsal view of cranium; (above, right) ventral view of cranium; and (below) lateral view of cranium and mandible. (Photograph taken by John Weinstein, Field Museum image number Z94486_05d.)
Fig. 9 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 9. Ventral views of skulls of Miniopterus spp. from Madagascar: (above, from left to right) M. manavi (FMNH 194074) from the Grotte de Fandanana, near Fandriana; M. griveaudi (FMNH 169712) from near the Andrafiabe Cave, Ankarana; holotype of M. aelleni (FMNH 173067), from the Canyon d'Antsiroandoa, Ankarana; (below, left) holotype of M. brachytragos (FMNH 175840), from the Forêt d'Ambovonomby, Parc National de Namoroka, Forêt d'Ambovonomby; and (below, right) holotype of M. mahafaliensis (FMNH 173197), from near Mitoho Cave, Parc National de Tsimanampetsotsa. (Photograph taken by J. Weinstein, Field Museum image number Z94488_02d.)
Fig. 4 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 4. Right ear and tragus of Miniopterus spp. from Madagascar: A, M. brachytragos (FMNH 175840, holotype), from Parc National de Namoroka, Forêt d'Ambovonomby, 26 km NW Andranomavo; B, M. brachytragos (FMNH 172685) from the Forêt de Binara, near Analamazava River, 7.5 km SW Daraina (village); C, M. brachytragos (FMNH 202523) from 1.8 km S Ambanizana, Masoala Peninsula; D, M. mahafaliensis (FMNH 173197, holotype) from Parc National de Tsimanampetsotsa, 6.5 km NE Efoetse, near Mitoho Cave; E, M. mahafaliensis (FMNH 176101) from Parc National de Kirindy-Mite, near village of Betakilotra, 11 km SE Marofihitsa; F, M. griveaudi (FMNH 184055) from Beloboka, grotte n°1, 12.5 km E Mahajanga, Madagascar; G, M. aelleni (FMNH 175842) from the Parc National de Namoroka, Forêt d'Ambovonomby, 26 km NW Andranomavo. The slightly elongated and pointed distal portion of the tragus in FMNH 175840 (A), as compared to FMNH 172685 and FMNH 202523, maybe an anomalous shape in M. brachytragos.
Fig. 1 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 1. Map of Madagascar showing localities mentioned in the text and sites where specimens of Miniopterus brachytragos sp. nov., M. mahafaliensis sp. nov., M. manavi sensu stricto, M. petersoni, M. griveaudi, and M. aelleni have been collected. The latter two species are also known from the Comoro Archipelago (Goodman et al., 2009b). The species symbols for the sites of Namoroka and Bemaraha have been slightly spread out to avoid obscuring information.
Fig. 2 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 2. Phylogenetic position of different Miniopterus spp. Miniopterus fuliginosus was selected as the outgroup. The tree presented was produced using Bayesian analysis. Posterior probabilities (Bayesian
Figure 5 in Disentangling taxonomy within the Rhabditis (Pellioditis) marina (Nematoda, Rhabditidae) species complex using molecular and morhological tools
Figure 5. Graphical polytomous key for identification of species within the R. (P.) marina species complex. A, females from all species, body length vs. body length/tail length; B, females from the clustered species in A, tail length vs. buccal cavity length; C, males from all species, body length vs. body length/tail length; D, males from the clustered species in C, tail length vs. buccal cavity length; F, males from the clustered species in D, body length vs. spicule length.
Figure 2 in Disentangling taxonomy within the Rhabditis (Pellioditis) marina (Nematoda, Rhabditidae) species complex using molecular and morhological tools
Figure 2. One of the seven most parsimonious trees of the combined nuclear ITS and D2D3 expansion segments. Values above branches (or indicated by arrow) are bootstrap support from MP, ML and posterior probability values from BA. Only bootstrap values above 50 are indicated. Lineages are indicated next to each branch.
Figure 1 in Disentangling taxonomy within the Rhabditis (Pellioditis) marina (Nematoda, Rhabditidae) species complex using molecular and morhological tools
Figure 1. One of the 46 most parsimonious trees based on 396 bp of the mitochondrial COI gene. Values above branches are bootstrap supports from MP, ML, posterior probability values of BA and the number of fixed differences for each branch. Only bootstrap values above 50 are indicated. Lineages are indicated next to each branch. A dash indicates the absence of a branch in the respective analysis.
Data collected through a questionnaire regarding satisfaction in the use of technological simulation tools in learning, in a University of Peru
<p>Data collected through a questionnaire regarding satisfaction in the use of technological simulation tools in learning, in a University of Peru</p>
Datset of the paper entitled "FAIR degree assessment in agriculture datasets using the F-UJI tool".
<p>This is a dataset of our research realised recently, which contains tested results (json files) by F-UJI tool and FAIR assesment reports of tested repositories.</p>
Databases for MyCodentifier: A tool for routine identification of nontuberculous mycobacteria using MGIT enriched shotgun metagenomics.
<p>Databases used for MyCodentifier a Nextflow pipeline to identify Mycobacterium tuberculosis complex (MTBC) and Nontuberculous mycobacteria (NTM) species from Next-generation sequencing (NGS) data.<br> <br> <strong>Short description:</strong><br> The pipeline is constructed using nextflow as workflow manager running in a docker container. It is able to identify species of MTBC/NTM from positive Mycobacterial Growth Indicator Tube (MGIT) cultures. To do so it uses an hsp65 database for fast identification coupled with a Metagenomic method using centrifuge to identify on genome level. For TB it also is able to identify subspecies. Results are presented in automated pdf and html reports.</p> <table> <caption><strong>Databases</strong></caption> <tbody> <tr> <td><strong>Name</strong></td> <td><strong>Short Description</strong></td> </tr> <tr> <td>20220726_ref.tar.gz</td> <td>7 major mycobacterial genomes as centrifuge classification database, used for reference-based mapping and genotype resistance prediction</td> </tr> <tr> <td>20220726_wgs_centrifuge_db_Radboudumc_MB.tar.gz</td> <td>centrifuge classification database using Tortoli <em>et al</em> 2017 Mycobacterium strains + additional strains</td> </tr> <tr> <td>genomes.tar.gz</td> <td>7 major mycobacterial genomes, annotation and Genbank files. Files are paired with 20220726_ref.tar.gz</td> </tr> <tr> <td>snpEff.tar.gz</td> <td>7 major mycobacterial genomes annotation models for snpEff.</td> </tr> <tr> <td>Tortoli_etal_hsp65.tar.gz</td> <td>KMA database of hsp65 gene extractions of the Tortoli <em>et al</em> 2017 Mycobacterium strains.</td> </tr> <tr> <td> <p>Used in the study:<br> p_compressed+h+v.tar.gz (12/06/2016)</p> </td> <td> <p>Databases available via <a>ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data</a> or <a href="https://ccb.jhu.edu/software/centrifuge/manual.shtml#custom-database">https://ccb.jhu.edu/software/centrifuge/manual.shtml#custom-database</a></p> </td> </tr> </tbody> </table> <p><strong>MyCodentifier Github:</strong></p> <p><a href="https://jordycoolen.github.io/MyCodentifier/">https://jordycoolen.github.io/MyCodentifier/</a></p> <p> </p> <p> </p>
Observational data to validate an observational tool using inter-rater reliability
<p>The dataset includes a set of observations made from videos in The Observer XT software by 17 observers (16 novice observers and 1 expert observer) to validate an observation grid. The data made available are the observations, without the videos, and do not include any personal information.</p>
Standardized comparison of different versions of the DUFSS questionnaire using the EMPRO tool.
<p>Dataset corresponding to the evaluations of the different versions of the DUFSS questionnaire using the EMPRO tool. </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.