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Fig. 2 in Detection of Breinlia sp. (Nematoda) in the Leadbeater's possum (Gymnobelideus leadbeateri)
Fig. 2. Relationship of the novel Breinlia sp. Taxon (bold-type) from the lung of the Leadbeater's possum with members of the Onchocercidae, established by phylogenetic analysis of small subunit of nuclear ribosomal RNA gene (SSU) sequence data employing the Bayesian method. Posterior probabilities are indicated at nodes. Mastophorus muris was used as an outgroup.
Fig. 1 in The detection of Japanese encephalitis virus in Megachiropteran bats in West Kalimantan, Indonesia: A potential enzootic transmission pattern in the absence of pig holdings
Fig. 1. Buffer map overlaying estimated flight range of Culex mosquitoes and hunting ranges of bats.
Fig. 3 in Detection of Eumonospora henryae (Apicomplexa: Sarcocystidae) from Falco columbarius (Falconiformes: Aves): Comparison of host-parasite phylogram and comments on the family Sarcocystidae Poche, 1913
Fig. 3. Phylograms of the genus Eumonospora on the left and core land birds modified from McClure et al. (2019) on the right. The boxes under Eumonospora spp. represent detected host species and the shaded boxes encompass the Afroaves. The lines connect parasites and hosts encountered, with the dotted line indicating host switching across order boundaries.
Fig. 1 in Detection of Eumonospora henryae (Apicomplexa: Sarcocystidae) from Falco columbarius (Falconiformes: Aves): Comparison of host-parasite phylogram and comments on the family Sarcocystidae Poche, 1913
Fig. 1. Optical (A, B) and differential interference contrast photomicrographs (C, D) of oocysts and sporocysts of Eumonospora sp. detected from Falco columbarius. Fig. 1A. Sporulated oocyst with stout sporozoites (SZ) inside a sporocyst (SP). Fig. 1B. A collapsed oocyst with a compact sporocyst residuum (SR) within an SP. Fig. 1C. Randomly diffused SR within an SP. Fig. 1D. Eight SZs with diffused SR. Scale bars = 10 μm.
Fig. 2 in Detection of Eumonospora henryae (Apicomplexa: Sarcocystidae) from Falco columbarius (Falconiformes: Aves): Comparison of host-parasite phylogram and comments on the family Sarcocystidae Poche, 1913
Fig. 2. Phylogenetic trees based on three concatenated datasets (A: 18S + cox1, B: 18S + 28S, and C: 28S + cox1). Phylogenetic analyses are performed via Bayesian inference (BI) and maximum likelihood (ML) methods. Nodes are labelled with probability for BI method node support (left) and bootstrap value support for the ML method (right). Similar phylograms are illustrated with both methods in all datasets. Monophyletic clade of Eumonospora spp. branches off earlier than the clade of Besnoitia spp. and the clade comprising genera Hammondia, Heydornia, Neospora, and Toxoplasma. 18S: nuclear small subunit ribosomal DNA; 28S: nuclear large subunit ribosomal DNA; cox1: mitochondrial Cytochrome C oxidase subunit 1; NA: not available.
Fig. 1 in Molecular detection and genotypes of Enterocytozoon bieneusi in farmed mink (Neovison vison), blue foxes (Alopex lagopus), and raccoon dogs (Nyctereutes procyonoides) in Xinjiang, China
Fig. 1. Phylogenetic relationships of the E. bieneusi genotypes. The relationships were inferred using NJ analysis of the ITS rRNA gene and the values generated greater than 50% are shown beside the nodes. Genotypes with hollow circles and filled circles are known and novel genotypes identified in this study, respectively.
Fig. 3 in A comparison of detection methods of Alaria alata mesocercariae in wild boar (Sus scrofa) meat
Fig. 3. Probability of detection of DMS using various methods (Digestion, D + P, Compressor) in relation to numbers of DMS in meat sample (basing on AMT method) (n = 43 for D + P, Digest, n = 19 for Compressor, for details, see Methods).
Fig. 1 in A comparison of detection methods of Alaria alata mesocercariae in wild boar (Sus scrofa) meat
Fig. 1. The scheme of the experiment. Legend: P – prevalence of infection has been determined, I – intensity of infection has been determined, S – sensitivity of method has been determined, DMS – Distomum musculorum suis (mesocercariae of Alaria alata), AMT-reference – Alaria alata mesocercariae migration technique – reference method, Compressor – compressor analysis, Digestion – digestion with digestion stirrer, D + P – modified digestion with Pancreatin® bile pancreatic enzymes.
Fig. 5 in Identification of Amblyomma javanense and detection of tick-borne Ehrlichia spp. in confiscated Malayan Pangolins
Fig. 5. Phylogenetic tree based on the 16S rRNA (A) and gltA (B) of pathogens found in ticks from confiscated pangolins. Analyses were conducted by using MEGA software version 6.0 with the Maximum Likelihood algorithm. Bootstrap values were calculated with 1000 replicates. The number on each branch indicates bootstrap values. Red triangles: sequences of Ehrlichia spp. obtained in this study. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 1 in Identification of Amblyomma javanense and detection of tick-borne Ehrlichia spp. in confiscated Malayan Pangolins
Fig. 1. Morphologic identification of ticks on the surface of confiscated Malayan pangolins. Tick on Malayan pangolin surface (A). Dorsa view, ventral view and typical feature details of male (B) and female (C) Amblyomma javanense ticks collected from confiscated Malayan pangolins. Black bar, 2 mm.
Fig. 4 in Identification of Amblyomma javanense and detection of tick-borne Ehrlichia spp. in confiscated Malayan Pangolins
Fig. 4. The histopathological examination of Malayan pangolins tissue slide using hematoxylin-eosin (HE) staining. A: Heart, myocardial cells were necrotic, and the myoplasm at the necrosis was dissolved into vacuoles, some of which were lipid droplet vacuoles. B: Liver, sinus hepaticus was dilatate with blood stasis. C: Spleen, splenic cord widened and lymphocytes multiplied. D: Lung, alveoli collapse, inflammatory cell infiltration and capillaries congestion. E: Kidney, the renal tubules were transparent, with capillaries congested and cystic spaces dilated in the glomeruli. F: Lymph nodes, medullary blood vessels were dilated and congested, and there were many macrophages in the medullary cord. G: Salivary glands, epithelial cells of mucosa necrosis and submucosa congestion. H: Bladder, mucosa folds inward when empty. A-E, 400 X; F–H, 200X.
Fig. 2 in A comparison of detection methods of Alaria alata mesocercariae in wild boar (Sus scrofa) meat
Fig. 2. Mean numbers of DMS in meat sample (30 g) and comparison with the Kruskall Wallis test (X2 = 64.34.03; df = 2; P <0.001, N = 43 in all cases) and pairwise comparison with the Mann-Whitney U test (statistical difference was stated in comparison of pairs: AMT-Digestion and AMT-D + P, p <0.001 in both cases).
Fig. 3 in Identification of Amblyomma javanense and detection of tick-borne Ehrlichia spp. in confiscated Malayan Pangolins
Fig. 3. Gross pathological lesions of dead Malayan pangolins after autopsy. A: Pale, even purple, superficial mucosa around the nose and mouth. B: Congestion and hemorrhage observed in the lung. C: Myocardial edema, pericardium effusion and ventricular congestion in the heart. D: Kidney congestion. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 2 in Identification of Amblyomma javanense and detection of tick-borne Ehrlichia spp. in confiscated Malayan Pangolins
Fig. 2. Phylogenetic tree based on the 16S rRNA (A) and ITS2 (B) of ticks from confiscated Malayan pangolins. Analyses were conducted using MEGA 6.0 with the Maximum Likelihood algorithm. Bootstrap values were calculated with 1000 replicates. The number on each branch indicates bootstrap value. Red triangles and red lines: sequences of ticks obtained in this study. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 2 in Molecular detection of Cryptosporidium parvum in wild rodents (Phyllotis darwini) inhabiting protected and rural transitional areas in north-central Chile
Fig. 2. Phylogram representing analysis of the 18 rRNA region. The evolutionary history was inferred with maximum likelihood method and the Tamura 3-parameter (T92) model with a discrete Gamma distribution (5 categories (+G)). Analysis contains sequences uploaded from GenBank (with Cryptosporidium species, host, country, and accessions numbers in brackets) and those obtained in the present study are shown in triangles (with ID isolate, host, site of sampling and country, and accessions numbers in brackets). Bootstrap values are represented as per cent of internal branches (1000 replicates), and values lower than 50 are hidden. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. Cryptosporidium muris was used to root the tree.
Fig. 1 in Molecular detection of Cryptosporidium parvum in wild rodents (Phyllotis darwini) inhabiting protected and rural transitional areas in north-central Chile
Fig. 1. Map of the Coquimbo region in Chile showing the two types of areas (i.e., Bosque Fray Jorge National Park - BFPNP [in green]; El Tangue Farm [in blue]) in which Darwin's leaf-eared mice (Phyllotis darwini) were sampled. In each area, 4 grids were established, and 200 capture points were allocated per grid. (UTM projection. Datum WGS84, Zone 19J).
Fig. 1 in Molecular detection and characterization of Giardia spp., Cryptosporidium spp., and Blastocystis in captive wild animals rescued from central Colombia
Fig. 1. Cryptosporidium species in wild animals kept in captivity. The chord diagram shows the relation between Cryptosporidium species and the order and species of infected animals.
Fig. 1 in First detection of Echinococcus multilocularis in Bosnia and Herzegovina
Fig. 1. Study area localities (dots) and collection sites for red foxes were included in the study. The red dot shows the location with a determined E. multilocularis positive red fox. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 2. A in Prevalence and geographic distribution of Babesia conradae and detection of Babesia vogeli in free-ranging California coyotes (Canis latrans)
Fig. 2. A) PCR positivity (indicated by color) of coyotes (Canis latrans) carcasses recovered (▴) in each county between 2015 and 2019. B) Map of southern California including Los Angeles, Orange, Ventura, San Bernardino, Riverside, and San Diego counties showing B. conradae PCR positivity (indicated by color) in each city where coyote carcasses were recovered. The number of coyotes sampled at each location is indicated by the size of the circle.
Fig. 3 in Prevalence and geographic distribution of Babesia conradae and detection of Babesia vogeli in free-ranging California coyotes (Canis latrans)
Fig. 3. Maximum likelihood phylogenetic tree of Babesia positive coyotes (Canis latrans) collected in California from 2015 to 2019 with 7 different published reference sequences from other Babesia species for comparison. Scale bar represents percent of genetic variation along tree branches. Labels include coyote ID and location found. Alphanumeric values in parenthesis denote published GenBank sequence. Clades in <60% of bootstraps are collapsed.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.