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Fig. 3 in Long Term (1985-2018) Changes Of The Habitat Suitability Of European Souslik Assessed By Maxent Modelling Based On Landsat Satellite Imagery - A Case Study From A Mountain Landscape Of Central Bulgaria
Fig. 3. Negative and positive anomalies (white and black bars) of the Mean Annual Temperature time series for the period of 1985–2018 (data from the meteorological station Sofia)
Fig. 2 in Long Term (1985-2018) Changes Of The Habitat Suitability Of European Souslik Assessed By Maxent Modelling Based On Landsat Satellite Imagery - A Case Study From A Mountain Landscape Of Central Bulgaria
Fig. 2. Changes in the number of grazing livestock in the southern central Bulgarian planning region for the period 2001–2018
Text-fig. 8. Scanning electron micrographs (a–f, h) and X-ray microtomographic orthoslices (g) of flowers from Zliv-Řídká Blana locality. a: Taxon 27, epigynous flower, no. NM-F 4504; b: Taxon 30, epigynous flower, remains of two thick sepals, a massive nectary disk (arrowhead) and two styles, no. NM-F 3199; c: Taxon 29, flower with stamens have long filament, calyx (ca) and corolla (co), no. NM-F 3198; d: Taxon 32, flower, no. NM-F 4503; e–h: Taxon 14, e – hypogenous flower, no. NM-F 3196, f – floral bud with a thick pedicel, no. NM-F 3196, g – flower with gynoecium showing central placentation and several seeds, no. NMF 3196, h – flower with gynoecium showing several seeds, no. NM-F 4505. in Plant Mesofossils From The Late Cretaceous Klikov Formation, The Czech Republic
Text-fig. 8. Scanning electron micrographs (a–f, h) and X-ray microtomographic orthoslices (g) of flowers from Zliv-Řídká Blana locality. a: Taxon 27, epigynous flower, no. NM-F 4504; b: Taxon 30, epigynous flower, remains of two thick sepals, a massive nectary disk (arrowhead) and two styles, no. NM-F 3199; c: Taxon 29, flower with stamens have long filament, calyx (ca) and corolla (co), no. NM-F 3198; d: Taxon 32, flower, no. NM-F 4503; e–h: Taxon 14, e – hypogenous flower, no. NM-F 3196, f – floral bud with a thick pedicel, no. NM-F 3196, g – flower with gynoecium showing central placentation and several seeds, no. NMF 3196, h – flower with gynoecium showing several seeds, no. NM-F 4505.
Text-fig. 3. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Volume renderings of flower bud in two different lateral views showing long pedicel, distinct calyx (ca) with almost equiaxial epidermal cells and corolla (co) with nearly smooth surface. c–e: Transverse sections (c, orthoslice xy1500; d, orthoslice xy1760; e, orthoslice xy1850) through flower bud at levels below the anthers showing stamen filaments (yellow) opposite the corolla lobes (co) and smaller staminodes (orange) in Early Flowers Of Primuloid Ericales From The Late Cretaceous Of Portugal And Their Ecological And Phytogeographic Implications
Text-fig. 3. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Volume renderings of flower bud in two different lateral views showing long pedicel, distinct calyx (ca) with almost equiaxial epidermal cells and corolla (co) with nearly smooth surface. c–e: Transverse sections (c, orthoslice xy1500; d, orthoslice xy1760; e, orthoslice xy1850) through flower bud at levels below the anthers showing stamen filaments (yellow) opposite the corolla lobes (co) and smaller staminodes (orange)
Text-fig. 1. SEM images of flowers of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Flowers in lateral view showing elongated pedicel, narrowly triangular sepals and elongated protruding style (a); note the large openings in the floral tissue and pedicel (asterisks) interpreted as schizogenous secretory cavities. c: Flower in lateral view with portion of the calyx missing exposing the ovary wall and slightly raised nectariferous ring with probable stomata-like secretory structures (arrow). d: Flower in lateral view showing long pedicel and three of the five tepals; note the elongated narrowly triangular form of the sepals. e: Flower in oblique lateral view with portion of the calyx missing exposing the ovary and elongated style. f, g: Flowers in apical view showing the bases of five sepals (f) and apex of the five-parted ovary; note larger openings in the floral tissue (asterisk) interpreted as schizogenous secretory cavities. Specimens, Mira 100-S170155 (a, holotype), Mira 100-S153145 (b, c, g), Mira 100- S101267 (d), Mira 105-S100732 (e), Mira 100-S101268 (f). Scale bars = 600 µm (a–g). in Early Flowers Of Primuloid Ericales From The Late Cretaceous Of Portugal And Their Ecological And Phytogeographic Implications
Text-fig. 1. SEM images of flowers of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Flowers in lateral view showing elongated pedicel, narrowly triangular sepals and elongated protruding style (a); note the large openings in the floral tissue and pedicel (asterisks) interpreted as schizogenous secretory cavities. c: Flower in lateral view with portion of the calyx missing exposing the ovary wall and slightly raised nectariferous ring with probable stomata-like secretory structures (arrow). d: Flower in lateral view showing long pedicel and three of the five tepals; note the elongated narrowly triangular form of the sepals. e: Flower in oblique lateral view with portion of the calyx missing exposing the ovary and elongated style. f, g: Flowers in apical view showing the bases of five sepals (f) and apex of the five-parted ovary; note larger openings in the floral tissue (asterisk) interpreted as schizogenous secretory cavities. Specimens, Mira 100-S170155 (a, holotype), Mira 100-S153145 (b, c, g), Mira 100- S101267 (d), Mira 105-S100732 (e), Mira 100-S101268 (f). Scale bars = 600 µm (a–g).
data sets of "Dynamic Linear Modeling estimates of long-term ozone trends from homogenized Dobson Umkehr profiles at Arosa, Switzerland"
<p>data sets from "Dynamic Linear Modeling estimates of long-term ozone trends from homogenized Dobson Umkehr profiles at Arosa, Switzerland"</p> <p>Monthly means ozone profiles data sets of MCH homogenized Dobson D051 and of Brewer B040 used in the article entitled: "Dynamic Linear Modeling estimates of long-term ozone trends from homogenized Dobson Umkehr profiles at Arosa, Switzerland" by Eliane Maillard Barras, Alexander Haefele, René Stübi, Achille Jouberton, Herbert Schill, Irina Petropavlovskikh, Koji Miyagawa, Martin Stanek, and Lucien Froidevaux.</p> <p><a href="https://doi.org/10.5194/acp-2022-344">https://doi.org/10.5194/acp-2022-344</a></p>
Genome annotations of Drosophila melanogaster and Drosophila simulans wild-type strains from long read sequencing assemblies
<p>Genome assemblies were performed for eight wild-type strains of Drosophila melanogaster and Drosophila simulans from Oxford Nanopore long read sequencing (please refer to Mohamed et al. Cells 2020 (doi:10.3390/cells9081776)). Assemblies were deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB50024 (<a href="https://www.ebi.ac.uk/ena/browser/view/PRJEBxxxx">https://www.ebi.ac.uk/ena/browser/view/</a>PRJEB50024).</p> <p>Transposable Element annotations: we used RepeatMasker 4.1.0 (<a href="http://repeatmasker.org/">http://repeatmasker.org/</a>) -species Drosophila, followed by OneCodeToFindThemAll (Bailly-Bechet et al. 2014) with default parameters.</p> <p>Gene annotations: We retrieved gtf files from FlyBase : <a>ftp.flybase.net/genomes/D</a><a>rosophila_melanogaster/dmel_r6,46_FB2022_03/gft/dmel-all-r6.46.gtf.gz</a> and <a>ftp.flybase.net/genomes/Drosophila_simulans/dsim_r2,02_FB2017_04/gtf/dsim-all-</a><a>r2,02.gtf.gz</a>. The corresponding fasta files were also downloaded from FlyBase: <a>ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6,46_FB2022_03/</a><a>fasta</a><a>/dmel-all-</a><a>chromosome-</a><a>r6.46.</a><a>fasta</a><a>.gz</a> and <a>ftp.flybase.net/genomes/Drosophila_simulans/dsim_r2,02_FB2017_04/</a><a>fasta</a><a>/dsim-all-</a><a>chromosome-</a><a>r2,02.</a><a>fasta</a><a>.gz</a>. We used Liftoff (Shumate and Salzberg, 2020) to lift over gene annotations from the references to our genome assemblies. We used -flank 0.2 and only kept the “gene” and “exon” terms.</p>
Data for manuscript "Long-term variation in the quasi-five-day wave in the top layer of Venus clouds"
<p>The dataset contain the derived cloud motions from Akatsuki LIR level3c and the corrected LIR level3c brightness temperature. The data of each figure used for drawing are also contained.</p>
Long-term variations of daily insolation and Quaternary climatic changes
<p>Supplementary material to:</p> <p>Berger A. L. (1978), Long-term variations of daily insolation and Quaternary climatic changes, Journal of the Atmospheric Sciences, (35) 2362-2367 doi:10.1175/1520-0469(1978)035<2362:LTVODI>2.0.CO;2</p> <p>Tables and FORTRAN computer code for the computation of daily mean insolation, according to the solution BER78.</p> <p>This solution is commonly referred to as BER78.</p> <p>Material uploaded to Zenodo by Michel Crucifix on 2022-10-14.</p>
Long-term demographic trends and spatio-temporal distribution of past human activity in Central Europe: Comparison of archaeological and palaeoecological proxies (datasets and R scripts)
<p>This digital archive is an outcome of the paper Kolář J., Macek M., Tkáč P., Novák D. & V.Abraham: Long-term demographic trends and spatio-temporal distribution of past human activity in Central Europe: Comparison of archaeological and palaeoecological proxies. Quaternary Science Reviews, 2022</p>
Divide-and-conquer approach to study protein tunnels in long molecular dynamics simulations
<p># *"Divide-and-conquer approach to study protein tunnels in long molecular dynamics simulations"*</p> <p>The input files and data used for the paper *"Divide-and-conquer approach to study protein tunnels in long molecular dynamics simulations"* are separated in the different folders depending stage they belong to.</p> <p>## Folders</p> <p> 1. **01_inputs:** The MD trajectory of DhaA used (only protein atoms present)<br> 2. **02_sliced_trajectory:** The CAVER3 results for the sliced trajectory (eight parts)<br> 3. **03_sliced_filtered:** Filtered CAVER3 results and results from the divide-and-conquer approach<br> 4. **04_full_trajectory:** The CAVER3 results for the full trajectory analysis<br> 5. **05_guided_example:** Guided example for the divide-and-conquer approach<br> </p>
FIGURE 4 in Taxon-specific variability of leaf traits in three long-ranging fossil-species of the Paleogene and Neogene: Responses to climate?
FIGURE 4. Site-specific data for lamina length and lamina width plotted for each taxon. 4A: Lamina length for Platanus neptuni. 4B: Lamina width for P. neptuni. 4C: Lamina length for Eotrigonobalanus furcinervis. 4D: Lamina width for E. furcinervis. 4E: Lamina length for Daphnogene cinnamomifolia. 4F: Lamina width for D. cinnamomifolia. The boxes span the 50% interquartile. The horizontal lines within the boxes indicate the median values. The "whiskers" mark the highest and lowest values. Outliers located at a distance of up to 1.5 times the quartile span outside the whiskers are drawn as asterisks, and extreme outliers are drawn as circles. Different minuscule letters indicate statistically significant differences among sites. Colors indicate deposit type. Colors indicate deposit type. Green: fluviatile. Red: volcanic. Blue: marine. Lines delimit age groups. LE: Late Eocene. EO: Early Oligocene. LO: Late Oligocene. EM: Early Miocene. For site numbers and dating see Table 1.
FIGURE 1 in Taxon-specific variability of leaf traits in three long-ranging fossil-species of the Paleogene and Neogene: Responses to climate?
FIGURE 1. Map showing the locations of the considered sites, which are numbered according to Table 1.
FIGURE 3 in Taxon-specific variability of leaf traits in three long-ranging fossil-species of the Paleogene and Neogene: Responses to climate?
FIGURE 3. Site-specific data for lamina area and lamina perimeter plotted for each taxon. 3A: Lamina area for Platanus neptuni. 3B: Lamina perimeter for P. neptuni. 3C: Lamina area for Eotrigonobalanus furcinervis. 3D: Lamina perimeter for E. furcinervis. 3E: Lamina area for Daphnogene cinnamomifolia. 3F: Lamina perimeter for D. cinnamomifolia. The boxes span the 50% interquartile. The horizontal lines within the boxes indicate the median values. The "whiskers" mark the highest and lowest values. Outliers located at a distance of up to 1.5 times the quartile span outside the whiskers are drawn as asterisks, and extreme outliers are drawn as circles. Different minuscule letters indicate statistically significant differences among sites. Colors indicate deposit type. Green: fluviatile. Red: volcanic. Blue: marine. Lines delimit age groups. LE: Late Eocene. EO: Early Oligocene. LO: Late Oligocene. EM: Early Miocene. For site numbers and dating see Table 1.
FIGURE 6 in Taxon-specific variability of leaf traits in three long-ranging fossil-species of the Paleogene and Neogene: Responses to climate?
FIGURE 6. Site-specific data for lamina centroid and leaf length-to-width ratio (LWR) plotted for each taxon. 6A: Lamina centroid for Platanus neptuni. 6B: LWR for P. neptuni. 6C: Lamina centroid for Eotrigonobalanus furcinervis. 6D: LWR for E. furcinervis. 6E: Lamina centroid for Daphnogene cinnamomifolia. 6F: LWR for D. cinnamomifolia. The boxes span the 50% interquartile. The horizontal lines within the boxes indicate the median values. The "whiskers" mark the highest and lowest values. Outliers located at a distance of up to 1.5 times the quartile span outside the whiskers are drawn as asterisks, and extreme outliers are drawn as circles. Different minuscule letters indicate statistically significant differences among sites. Colors indicate deposit type. Colors indicate deposit type. Green: fluviatile. Red: volcanic. Blue: marine. Lines delimit age groups. LE: Late Eocene. EO: Early Oligocene. LO: Late Oligocene. EM: Early Miocene. For site numbers and dating see Table 1.
FIGURE 2 in Taxon-specific variability of leaf traits in three long-ranging fossil-species of the Paleogene and Neogene: Responses to climate?
FIGURE 2. Plasticity index (PI) of various leaf traits, for the considered sites and taxa. 2A: PI for lamina area. 2B: PI for lamina length. 2C: PI for lamina perimeter. 2D: PI for lamina width. 2E: PI for lamina circularity. 2F: PI for lamina centroid. Squares: Platanus neptuni. Circles: Daphnogene cinnamomifolia. Triangles: Eotrigonobalanus furcinervis. Colors indicate deposit type. Green: fluviatile. Red: volcanic. Blue: marine. Lines delimit age groups. LE: Late Eocene. EO: Early Oligocene. LO: Late Oligocene. EM: Early Miocene. For site numbers and dating see Table 1.
FIGURE 5 in Taxon-specific variability of leaf traits in three long-ranging fossil-species of the Paleogene and Neogene: Responses to climate?
FIGURE 5. Site-specific data for lamina circularity and lamina roundness plotted for each taxon. 5A: Lamina circularity for Platanus neptuni. 5B: Lamina roundness for P. neptuni. 5C: Lamina circularity for Eotrigonobalanus furcinervis. 5D: Lamina roundness for E. furcinervis. 5E: Lamina circularity for Daphnogene cinnamomifolia. 5F: Lamina roundness for D. cinnamomifolia. The boxes span the 50% interquartile. The horizontal lines within the boxes indicate the median values. The "whiskers" mark the highest and lowest values. Outliers located at a distance of up to 1.5 times the quartile span outside the whiskers are drawn as asterisks, and extreme outliers are drawn as circles. Different minuscule letters indicate statistically significant differences among sites. Colors indicate deposit type. Colors indicate deposit type. Green: fluviatile. Red: volcanic. Blue: marine. Lines delimit age groups. LE: Late Eocene. EO: Early Oligocene. LO: Late Oligocene. EM: Early Miocene. For site numbers and dating see Table 1.
FIGURE 7. Age-specific discriminant analysis using all morphometric parameters for all sites. 7A in Taxon-specific variability of leaf traits in three long-ranging fossil-species of the Paleogene and Neogene: Responses to climate?
FIGURE 7. Age-specific discriminant analysis using all morphometric parameters for all sites. 7A: Eocene. 7B: Oligocene. Triangles: Platanus neptuni. Squares: Eotrigonobalanus furcinervis. Circles: Daphnogene cinnamomifolia.
FIGURE 8 in Taxon-specific variability of leaf traits in three long-ranging fossil-species of the Paleogene and Neogene: Responses to climate?
FIGURE 8. Circularity plotted against LWR. Blue circles: Platanus neptuni. Red squares: Eotrigonobalanus furcinervis. Yellow diamonds: Daphnogene cinnamomifolia. Black line: Relationship between circularity and length-towidth ratio of an ellipse. Please note that this relationship was calculated by using an approximate equation for the perimeter of an ellipse, which causes the slight deflection of the curve for high circularity values. As approximation, the following equation for the ellipse perimeter (EP) was used: EP = π* [2 * (a2 + b2)1/2].
FIGURE 3. Cervical vertebral series from Callawayasaurus columbensis UCMP 38349 in Congenital and late onset vertebral fusions in long necked plesiosaurs: The first report of spondylosis deformans in Sauropterygians
FIGURE 3. Cervical vertebral series from Callawayasaurus columbensis UCMP 38349 in ventral aspect. 1. Vertebrae 23,24,25, anterior end, to right. Scale bar, 5 cm. 2. Enlargement of osteophytic bridging between vertebrae 23-24, 24- 25. Abbreviations: ns, neural spine; cr, cervical rib. Scale bar equals 5 cm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.