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Figure 1 from: Whelan NV, Johnson PD, Garner JT, Strong EE (2017) On the identity of Leptoxis taeniata – a misapplied name for the threatened Painted Rocksnail (Cerithioidea, Pleuroceridae). ZooKeys 697: 21-36. https://doi.org/10.3897/zookeys.697.14060
Figure 1 - Map showing historical range of the Painted Rocksnail, L. coosaensis, and the Spotted Rocksnail, L. picta.
Figure 3 from: Whelan NV, Johnson PD, Garner JT, Strong EE (2017) On the identity of Leptoxis taeniata – a misapplied name for the threatened Painted Rocksnail (Cerithioidea, Pleuroceridae). ZooKeys 697: 21-36. https://doi.org/10.3897/zookeys.697.14060
Figure 3 - Type material of L. coosaensis and its synonyms and other specimens showing conchological variation seen in L. coosaensis. A USNM 121295, Anculosa coosaensis Lea, 1861 (lectotype) B UMMZ 101139, Anculosa aldrichi Goodrich, 1922 (holotype) C UMMZ 10144, Anculosa brevispira Goodrich, 1922 (holotype) D UMMZ 10145, Anculosa choccoloccoensis, Goodrich, 1922 (holotype) E USNM 1456804, Anculosa coosaensis Lea, 1861 (paralectotype) F–I USNM 121294 Anculosa coosaensis Lea, 1861 (paralectotypes) J USNM 121296 Anculosa coosaensis Lea, 1861 (paralectotype) K, L USNM 504866 "Leptoxis taeniata". N–P USNM 336408 "Leptoxis taeniata". Scale bar: 5 mm.
A combined proteomic and transcriptomic signature is predictive of response to anti-PD-1 treatment in patients with metastatic melanoma
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Рис. 2. ОбЩаЯ форма первичного продиссоконха (PD-I) и примордиальные морфоструктуры правой створки Turtonia minuta на препаратах световой микроскопии (вынаШиваюЩаЯ капсула, Уссурийский Залив, 2010 г., материалы А.В. ЧерныШова); PD-II – начало формированиЯ вторичного продиссоконха. Остальные условные обоЗначениЯ – см. рис. 1. in Larval, juvenile and adult Turtonia minuta (Bivalvia: Turtoniidae) and comparative shell morphology of the veneroid and venerid taxa from Peter the Great Bay, Sea of Japan
Рис. 2. ОбЩаЯ форма первичного продиссоконха (PD-I) и примордиальные морфоструктуры правой створки Turtonia minuta на препаратах световой микроскопии (вынаШиваюЩаЯ капсула, Уссурийский Залив, 2010 г., материалы А.В. ЧерныШова); PD-II – начало формированиЯ вторичного продиссоконха. Остальные условные обоЗначениЯ – см. рис. 1.
Figure 3 from: Scheffrahn RH, Bourguignon T, Akama PD, Sillam-Dussès D, Šobotník J (2018) Roisinitermes ebogoensis gen. & sp. n., an outstanding drywood termite with snapping soldiers from Cameroon (Isoptera, Kalotermitidae). ZooKeys 787: 91-105. https://doi.org/10.3897/zookeys.787.28195
Figure 3 Brachypterous nymph of Roisinitermesebogoensis gen. & sp. n. Top: Dorsal view of mandibles. Bottom: lateral view of head and thorax.
Figure 2 from: Scheffrahn RH, Bourguignon T, Akama PD, Sillam-Dussès D, Šobotník J (2018) Roisinitermes ebogoensis gen. & sp. n., an outstanding drywood termite with snapping soldiers from Cameroon (Isoptera, Kalotermitidae). ZooKeys 787: 91-105. https://doi.org/10.3897/zookeys.787.28195
Figure 2 Imago of Roisinitermesebogoensis gen. & sp. n. A Dorsal view of head and thorax B Oblique view of head C Lateral view of head and thorax D Right forewing (arrow on subcosta) and right hind wing.
Figure 1 from: Scheffrahn RH, Bourguignon T, Akama PD, Sillam-Dussès D, Šobotník J (2018) Roisinitermes ebogoensis gen. & sp. n., an outstanding drywood termite with snapping soldiers from Cameroon (Isoptera, Kalotermitidae). ZooKeys 787: 91-105. https://doi.org/10.3897/zookeys.787.28195
Figure 1 Phylogenetic tree of Kalotermitidae based on full mitochondrial genomes. The tree depicted was reconstructed with RAxML using the data matrix without third codon position. Node labels are the Maximum Likelihood bootstrap supports and the Bayesian posterior probabilities in the following order, from left to right: posterior probability of the analysis with third codon position included, posterior probability of the analysis without third codon position, bootstrap support of the analysis with third codon position included, bootstrap support of the analysis without third codon position, *indicates 100% bootstrap support and 1.0 posterior probability for all four analyses.
Figure 5 from: Scheffrahn RH, Bourguignon T, Akama PD, Sillam-Dussès D, Šobotník J (2018) Roisinitermes ebogoensis gen. & sp. n., an outstanding drywood termite with snapping soldiers from Cameroon (Isoptera, Kalotermitidae). ZooKeys 787: 91-105. https://doi.org/10.3897/zookeys.787.28195
Figure 5 Dorsal view of frons and mandibles of Roisinitermesebogoensis gen. n. sp. n. Inset: oblique ventral view of columnar hump (arrow).
Figure 4 from: Scheffrahn RH, Bourguignon T, Akama PD, Sillam-Dussès D, Šobotník J (2018) Roisinitermes ebogoensis gen. & sp. n., an outstanding drywood termite with snapping soldiers from Cameroon (Isoptera, Kalotermitidae). ZooKeys 787: 91-105. https://doi.org/10.3897/zookeys.787.28195
Figure 4 Soldier (holotype) of Roisinitermesebogoensis gen. & sp. n. Dorsal (A), lateral (B), and ventral (C) views of head and pronotum.
Figure 2 from: Nobis M, Gudkova PD, Pendry CA (2019) Synopsis of the tribe Stipeae (Poaceae) in Nepal. PhytoKeys 128: 97-119. https://doi.org/10.3897/phytokeys.128.34637
Figure 2 Cluster analysis (UPGMA method of classification and Gower's general similarity coefficient) performed on 16 qualitative morphological characters for all of the Nepalese members from the tribe Stipeae.
Figure 3 from: Nobis M, Gudkova PD, Pendry CA (2019) Synopsis of the tribe Stipeae (Poaceae) in Nepal. PhytoKeys 128: 97-119. https://doi.org/10.3897/phytokeys.128.34637
Figure 3 Lemma epidermal patterns (LEPs) of Old World Stipeae: aStipa breviflora [Kyrgyzstan, near Issyk-Kul Lake, M. Nobis (KRA)] bPtilagrostis concinna [India, Ladakh, Himalayas, L. Klimeš (KRA)] cPtilagrostis duthiei [India, Himalayas, J.F. Duthie 3585 (LE) dOrthoraphium roylei [India, Himalayas, J.F. Duthie 3568 (LE)] eTrikeraia hookeri [China, Tibet (PE 718306)] fPiptatherum munroi [Nepal, Solukhumbu, M.F. Watson et al. DNEP3 AX33 (E)] gAchnatherum brandisii [India, Kashmir, R.R. Stewart 18120 (NY)] hAchnatherum staintonii [Nepal, Mustang, M.A. Farille 81-340 (E)]. Annotations: b – basal cells, c – cork cells, sb – silica bodies, m – macro-hairs.
Figure 6 from: Bannikova AA, Jenkins PD, Solovyeva EN, Pavlova SV, Demidova TB, Simanovsky SA, Sheftel BI, Lebedev VS, Fang Y, Dalen L, Abramov AV (2019) Who are you, Griselda? A replacement name for a new genus of the Asiatic short-tailed shrews (Mammalia, Eulipotyphla, Soricidae): molecular and morphological analyses with the discussion of tribal affinities. ZooKeys 888: 133-158. https://doi.org/10.3897/zookeys.888.37982
Figure 6 Comparison of lingual view of posterior region of right mandible to show variation in mandibular and ramal foramina. Mandibular foramen: horizontal arrow; ramal foramen: vertical arrow. From left to right: holotype of Parablarinella griseldaNHMUK 1912.8.5.23; Blarinella quadraticaudaNHMUK 1911.2.1.59; holotype of Blarinella wardiNHMUK 1915.2.3. Scale bar: 1 mm.
Figure 7 from: Bannikova AA, Jenkins PD, Solovyeva EN, Pavlova SV, Demidova TB, Simanovsky SA, Sheftel BI, Lebedev VS, Fang Y, Dalen L, Abramov AV (2019) Who are you, Griselda? A replacement name for a new genus of the Asiatic short-tailed shrews (Mammalia, Eulipotyphla, Soricidae): molecular and morphological analyses with the discussion of tribal affinities. ZooKeys 888: 133-158. https://doi.org/10.3897/zookeys.888.37982
Figure 7 The female karyotype of Blarinella quadraticauda (G17-12) with 2n = 49, NFa = 62: routine Giemsa staining (A) and CBG-banding (B).
Figure 5 from: Bannikova AA, Jenkins PD, Solovyeva EN, Pavlova SV, Demidova TB, Simanovsky SA, Sheftel BI, Lebedev VS, Fang Y, Dalen L, Abramov AV (2019) Who are you, Griselda? A replacement name for a new genus of the Asiatic short-tailed shrews (Mammalia, Eulipotyphla, Soricidae): molecular and morphological analyses with the discussion of tribal affinities. ZooKeys 888: 133-158. https://doi.org/10.3897/zookeys.888.37982
Figure 5 Variation in morphology of the talonid of the lower molars A lingual view of left mandibular ramus of Parablarinella griseldaZMMU G18-252 B lingual view of left mandibular ramus of Blarinella quadraticaudaZMMU G17-12 C lingual view of right mandibular ramus of holotype of Blarinella wardiNHMUK 1915.2.1.3 D comparison of right lower molars to show variation in development of the entoconid and entoconid crest on m1 and m2 and the talonid of m3. Above holotype of Parablarinella griseldaNHMUK 1912.8.5.23, middle Blarinella quadraticaudaNHMUK 1911.2.1.57, below holotype of Blarinella wardiNHMUK 1915.2.1.3. The arrows indicate the entoconid and entoconid crest on m2. Scale bar: 1 mm.
Figure 4 from: Bannikova AA, Jenkins PD, Solovyeva EN, Pavlova SV, Demidova TB, Simanovsky SA, Sheftel BI, Lebedev VS, Fang Y, Dalen L, Abramov AV (2019) Who are you, Griselda? A replacement name for a new genus of the Asiatic short-tailed shrews (Mammalia, Eulipotyphla, Soricidae): molecular and morphological analyses with the discussion of tribal affinities. ZooKeys 888: 133-158. https://doi.org/10.3897/zookeys.888.37982
Figure 4 Skulls from left to right of the holotype of Parablarinella griseldaNHMUK 1912.8.5.23; Blarinella quadraticaudaNHMUK 1911.2.1.59; the holotype of Blarinella wardiNHMUK 1915.2.1.3 (please note that the number written incorrectly as 12.2.1.3 on the skull of this species should read 15.2.1.3). Top row: dorsal view; middle row: ventral view; lower row: left lateral view.
Figure 1 from: Bannikova AA, Jenkins PD, Solovyeva EN, Pavlova SV, Demidova TB, Simanovsky SA, Sheftel BI, Lebedev VS, Fang Y, Dalen L, Abramov AV (2019) Who are you, Griselda? A replacement name for a new genus of the Asiatic short-tailed shrews (Mammalia, Eulipotyphla, Soricidae): molecular and morphological analyses with the discussion of tribal affinities. ZooKeys 888: 133-158. https://doi.org/10.3897/zookeys.888.37982
Figure 1 Sample localities of specimens used for molecular analyses 1 China, Gansu, Lingtan County (NHMUK 12.8.5.23, holotype of Blarinella griselda Thomas, 1912) 2 China, Gansu, Taizishan NR (ZMMU S-195179) 3 China, Sichuan, Ruoergai (Zoige) (ZMMU G17-87) 4 China, Sichuan, Songpan (ZMMU G18-252) 5 China, Shaanxi, Mt.Qinling (after He et al. 2018) 6 China, Gansu, Huixian (ZMMU G17-12) 7 China, Sichuan, Baoxing (type locality of Blarinella quadraticauda (Milne-Edwards, 1872)). Unnumbered localities based on the GenBank data.
Figure 2 from: Bannikova AA, Jenkins PD, Solovyeva EN, Pavlova SV, Demidova TB, Simanovsky SA, Sheftel BI, Lebedev VS, Fang Y, Dalen L, Abramov AV (2019) Who are you, Griselda? A replacement name for a new genus of the Asiatic short-tailed shrews (Mammalia, Eulipotyphla, Soricidae): molecular and morphological analyses with the discussion of tribal affinities. ZooKeys 888: 133-158. https://doi.org/10.3897/zookeys.888.37982
Figure 2 The phylogenetic relationships in Blarinella as reconstructed in MrBayes based on cytb data. Numbers above or below branches correspond to Bayesian posterior probabilities and ML bootstrap values (>50%) generated using fast bootstrap algorithm in IQTREE. The genera Blarina and Cryptotis are used as outgroups.
Figure 3 from: Bannikova AA, Jenkins PD, Solovyeva EN, Pavlova SV, Demidova TB, Simanovsky SA, Sheftel BI, Lebedev VS, Fang Y, Dalen L, Abramov AV (2019) Who are you, Griselda? A replacement name for a new genus of the Asiatic short-tailed shrews (Mammalia, Eulipotyphla, Soricidae): molecular and morphological analyses with the discussion of tribal affinities. ZooKeys 888: 133-158. https://doi.org/10.3897/zookeys.888.37982
Figure 3 MrBayes tree of Soricinae genera as inferred from the concatenation of four nuclear genes. Numbers above or below branches correspond to Bayesian posterior probabilities and ML bootstrap values (>50%) generated using fast bootstrap algorithm in IQTREE. Crocidura fuliginosa is used as outgroup.
Dataset for molecular dynamics simulations of coalescence of Pd and AuPd clusters
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Spatial Transcriptomics data (GeoMx) of midbrain dopamine cells in control and PD subjects
<p>The repository includes Spatial Transcriptomic datasets generated by Nanostring GeoMx (Hu WTA) analysis of midbrain TH+ cells from Controls (n=10), Incidental Lewy Body Disease (n=10), early Parkinsons Disease (ePD,n=5) and late Parkinsons Disease (lPD,n=5). A total 348 Regions of Interest were analysed. The raw and processed counts and metadata are provided as an R Seurat object (geomx_edwards_thmask.rds). The scripts used for low level data processing are described in https://github.com/zchatt/ASAP-SpatialTranscriptomics/blob/main/geomx/lowlevel/README.md</p> <p>Tissue samples from pathologically confirmed asymptomatic stage I-II Lewy body disease, stage IV Lewy body PD (early-PD), stage VI Lewy body PD (late-PD)(Braak, Del Tredici et al. 2003) and controls without the neurological or neuropathological disease were obtained from the Sydney Brain Bank. The study was approved by the University of Sydney Human Research Ethics Committee (2021/845). All cases with PD were levodopa-responsive and fulfilled the UK Brain Bank Clinical Criteria for a diagnosis of clinical PD (Hughes, Ben-Shlomo et al. 1992) with no other neurodegenerative conditions. </p> <p>Cells were not extracted. Tissue sections were cut from FFPE blocks of post-mortem human midbrains at 6µm on a rotary microtome (HistoCore MULTICUT, Leica Biosystems) and mounted on Series 2 adhesive microscope slides (Trajan Scientific Medical, AU) for processing for spatial trranscriptomics. To remove the paraffin, slides were incubated in the oven at 60°C for 1hr and then submerged in HistoChoice Clearing Agent (Sigma-Aldrich, H2779) for 2x7mins, followed by rehydration in decreasing ethanol concentrations (100% ethanol for 2x3mins, 95% ethanol for 3mins, 70% ethanol for 3mins) and distilled H2O for 3mins. </p> <p>Tissue sections were immunohistochemically stained for tyrosine hydroxylase and Regions of Interest (ROIs) processed following Nanostring GeoMx® Digital Spatial Profiler using the manufacturer’s instructions. Libraries were sequenced on Illumina Novaseq 6000 platform using NovaSeq SP 100 cycle kit (XP workflow, 27-8-8-27).</p> <p>This research was funded in whole or in part by Aligning Science Across Parkinson’s (ASAP-020529) through the Michael J. Fox Foundation for Parkinson’s Research (MJFF). For the purpose of open access, the author has applied a CC BY 4.0 public copyright license to all Author Accepted Manuscripts arising from this submission.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.