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Fig. 4 in Systematic revision of the parasitoid wasp genus Glyptapanteles Ashmead (Hymenoptera: Braconidae: Microgastrinae) for Australia results in a ten-fold increase in species
Fig. 4. Distribution of species groups of Glyptapanteles Ashmead, 1904 in Australia. A. G. albigena species group. B. G. arcanus species group. C. G. austini species group. D. G. eburneus species group. E. G. mouldsi species group. F. G. niveus species group. G. Unplaced species of Glyptapanteles in Australia.
Data to "Evidence for the evolution of eusociality in stem ants and a systematic revision of †Gerontoformica (Hymenoptera: Formicidae)" published in Zoological Journal of the Linnean Society
<p>These are the µCT Datasets used in the study "Evidence for the evolution of eusociality in stem ants and a systematic revision of †<em>Gerontoformica</em> (Hymenoptera: Formicidae)" published in the Zoological Journal of the linnean society.<br> In the study, an amber piece containing 4 specimens of the stem ant genus †<em>Gerontoformica </em>was investigated, one of them being a pupa belonging to †<em>G. gracilis</em> (CASENT0741231), one adult belonging to †<em>G. gracilis</em> (CASENT0741232) and two adults of the newly described species †<em>G. sternorhabda</em> (CASENT0741233 and CASENT0741234). The adult specimen of †<em>G. gracilis</em> (CASENT0741232) had exception internal preservation, so higher magnification scans for anatomical details were performed. The dataset includes full body scans of all of these individuals, adjusted datasets in which the adult specimens were segmented out of the amber matrix (used for the volume renderings in the article) and the two head focused scans of †<em>G. gracilis</em> (CASENT0741232). The scanning parameters can be taken from the uploaded Scans Metadata Excel file, which is also part of the supplementary material of the related article. The two adult scans of †<em>G. sternorhabda</em> (CASENT0741233 and CASENT0741234) are in DICOM file format, all other data are in TIFF image format.</p>
Beyond depression and anxiety; a systematic review about the role of corticotropin-releasing hormone antagonists in diseases of the pelvic and abdominal organs-Worksheets
<p>This file has several worksheets corresponding to the data used for the review with the same table as indicated in the file</p>
Local communities' perceptions of wild edible plant and mushroom change: A systematic review
<p>These datasets are the basis of publication "Local communities’ perceptions of wild edible plant and mushroom change: A systematic review", DOI: https://doi.org/10.1016/j.gfs.2021.100601<br> File GFS_paperIDs.csv lists the articles that are included in the systematic review with their identification numbers.<br> File GFS_data_papers.csv contains data related to the articles reporting on changes of wild edible plants.<br> File GFS_data_plants.csv contains data related to the plant species that are affected by the changes.<br> File GFS_variable_desriptions.txt informs about the variables in files GFS_data_papers.csv and GFS_data_plants.csv.</p>
Molecular data from "Between a rock and a dry place: phylogenomics, biogeography, and systematics of ridge-tailed monitors (Squamata: Varanidae: Varanus acanthurus complex)"
<p><strong>Phylogenetic_dataset.csv</strong>: Unfiltered DArTseq data used in phylogenetic analyses. Readable by 'dartR' (Gruber et al. 2018).</p> <p><strong>Population_dataset.csv</strong>: Unfiltered DArTseq data used in population-level analyses. Readable by 'dartR' (Gruber et al. 2018).</p> <p><strong>Reference.csv</strong>: Spreadsheet listing individuals included in molecular analyses. Includes vouchers, species, name of each sample in DArTseq data sets, and GenBank accession numbers (GB) for mitochondrial data. ABTC stands for Australian Biological Tissue Collection; AA and CCM for field numbers of uncatalogued specimens. Other collection acronyms follow Sabaj (2019). We refrain from assigning individuals that were not included in the molecular analyses to any given species.</p>
FIG. 12 in Ontogenetic systematic characterisation of an endemic frog Rhacophorus malabaricus Jerdon, 1870 (Anura: Rhacophoridae) from Western Ghats, Kerala, India
FIG. 12. — Bayesian inference tree of selected species of Rhacophoridae Hoffman, 1932 (1858). For Rhacophorus malabaricus Jerdon, 1870, the sequences are newly generated (A, B), or from GenBank (C, D).
FIG. 11 in Ontogenetic systematic characterisation of an endemic frog Rhacophorus malabaricus Jerdon, 1870 (Anura: Rhacophoridae) from Western Ghats, Kerala, India
FIG. 11. — SEM image of keratodonts of second anterior tooth row (A2) of Rhacophorus malabaricus Jerdon, 1870 (Gosner stage 32). Abbreviations: KD, keratodonts; MD, marginal denticles. Scale bar: 10 µm.
FIG. 9 in Ontogenetic systematic characterisation of an endemic frog Rhacophorus malabaricus Jerdon, 1870 (Anura: Rhacophoridae) from Western Ghats, Kerala, India
FIG. 9. — Oral disc morphology of Rhacophorus malabaricus Jerdon, 1870 (Gosner stage 32). Abbreviations: A3G, third anterior tooth gap; A1 to A7 anterior tooth rows 1 to 7; P1 to P3 posterior tooth rows 1 to 3. Scale bar: 100 µm.
FIG. 4 in Ontogenetic systematic characterisation of an endemic frog Rhacophorus malabaricus Jerdon, 1870 (Anura: Rhacophoridae) from Western Ghats, Kerala, India
FIG. 4. — Developmental stages of Rhacophorus malabaricus Jerdon, 1870: A, Gosner stage 34; B, Gosner stage 35; C, Gosner stage 36; D, Gosner stage 37; E, Gosner stage 38; F, Gosner stage 39; G, Gosner stage 40; H, Gosner stage 41. Scale bars: A-E, 3 mm; F-H, 4 mm.
FIG. 6 in Ontogenetic systematic characterisation of an endemic frog Rhacophorus malabaricus Jerdon, 1870 (Anura: Rhacophoridae) from Western Ghats, Kerala, India
FIG. 6. — Habitus of the tadpole of Rhacophorus malabaricus Jerdon, 1870 stage 36: A, lateral view; B, dorsal view. Scale bar: 10 mm.
FIG. 3 in Ontogenetic systematic characterisation of an endemic frog Rhacophorus malabaricus Jerdon, 1870 (Anura: Rhacophoridae) from Western Ghats, Kerala, India
FIG. 3. — Developmental stages of Rhacophorus malabaricus Jerdon, 1870: A, Gosner stage 1; B, Gosner stage 13; C, Gosner stage 15; D, Gosner stage 22; E, Gosner stage 26; F, Gosner stage 27; G, Gosner stage 29; H, Gosner stage 31. Scale bars: 1 mm.
FIG. 8 in Ontogenetic systematic characterisation of an endemic frog Rhacophorus malabaricus Jerdon, 1870 (Anura: Rhacophoridae) from Western Ghats, Kerala, India
FIG. 8. — Correlation between morphometric parameters (total length and tail length) and stages A, and B, correlation between morphometric parameters (tail length and snout-vent length) and stages C, and D.
FIG. 5 in Ontogenetic systematic characterisation of an endemic frog Rhacophorus malabaricus Jerdon, 1870 (Anura: Rhacophoridae) from Western Ghats, Kerala, India
FIG. 5. — Developmental stages of Rhacophorus malabaricus Jerdon, 1870: A, Gosner stage 42; B, Gosner stage 43; C, Gosner stage 44; D, Gosner stage 46.
FIG. 1 in Ontogenetic systematic characterisation of an endemic frog Rhacophorus malabaricus Jerdon, 1870 (Anura: Rhacophoridae) from Western Ghats, Kerala, India
FIG. 1. — Map of study area (Karlakkod, Peppara Wildlife Sanctuary, Thiruvananthapuram, Kerala, India). Source: Survey of India Topographical Map.
FIG. 10 in Ontogenetic systematic characterisation of an endemic frog Rhacophorus malabaricus Jerdon, 1870 (Anura: Rhacophoridae) from Western Ghats, Kerala, India
FIG. 10. — SEM image of oral disc morphology of Rhacophorus malabaricus Jerdon, 1870 (Gosner stage 32). Abbreviations: A3G, third anterior tooth gap; A1 to A7, anterior tooth rows 1 to 7; LJSS, lower jaw sheath serration; LMP, lower marginal papillae; P1 to P3, posterior tooth rows 1 to 3; UJSS, upper jaw sheath serration; UMP, upper marginal papillae. Scale bar: 100 µm.
Individual repeatability of avian migration phenology: a systematic review and meta-analysis
<p>Changes in phenology and distribution are being widely reported for many migratory species in response to shifting environmental conditions. Understanding these changes and the situations in which they occur can be aided by understanding consistent individual differences in phenology and distribution and the situations in which consistency varies in strength or detectability.</p> <p>Studies tracking the same individuals over consecutive years are increasingly reporting migratory timings to be a repeatable trait, suggesting that flexible individual responses to environmental conditions may contribute little to population-level changes in phenology and distribution. However, how this varies across species and sexes, across the annual cycle and in relation to study (tracking method, study design) and/or ecosystem characteristics is not yet clear.</p> <p>Here, we take advantage of the growing number of publications in movement ecology to perform a phylogenetic multilevel meta-analysis of repeatability estimates for avian migratory timings to investigate these questions. Of 2,433 reviewed studies, 54 contained suitable information for meta-analysis, resulting in 177 effect sizes from 47 species.</p> <p>Individual repeatability of avian migratory timings averaged 0.414 (95% confidence interval: 0.3–0.5) across landbirds, waterbirds and seabirds, suggesting consistent individual differences in migratory timings is a common feature of migratory systems. Timing of departure from the non-breeding grounds was more repeatable than timings of arrival at or departure from breeding grounds, suggesting that conditions encountered on migratory journeys and outcome of breeding attempts can influence individual variation.</p> <p>Population-level shifts in phenology could arise through individual timings changing with environmental conditions and/or through shifts in the numbers of individuals with different timings. Our findings suggest that, in addition to identifying the conditions associated with individual variation in phenology, exploring the causes of between-individual variation will be key in predicting future rates and directions of changes in migratory timings. We, therefore, encourage researchers to report the within- and between- individual variance components underpinning the reported repeatability estimates to aid interpretation of migration behaviour. In addition, the lack of studies in the tropics means that levels of repeatability in less strongly seasonal environments are not yet clear.</p>
Three‐level hybrid modeling for systematic optimization of biocatalytic synthesis: α‐glucosyl glycerol production by enzymatic trans‐glycosylation from sucrose
<p>We provide here the underlying data of the publication "Three‐level hybrid modeling for systematic optimization of biocatalytic synthesis: α‐glucosyl glycerol production by enzymatic trans‐glycosylation from sucrose". Please find the abstract below.</p> <p>Mechanism-based kinetic models are rigorous tools to analyze enzymatic reactions, but their extension to actual conditions of the biocatalytic synthesis can be difficult. Here, we demonstrate (mechanistic-empirical) hybrid modeling for systematic optimization of the sucrose phosphorylase-catalyzed glycosylation of glycerol from sucrose, to synthesize the cosmetic ingredient α-glucosyl glycerol (GG). The empirical model part was developed to capture nonspecific effects of high sucrose concentrations (up to 1.5 M) on microscopic steps of the enzymatic trans-glycosylation mechanism. Based on verified predictions of the enzyme performance under initial rate conditions (Level 1), the hybrid model was expanded by microscopic terms of the reverse reaction to account for the full-time course of GG synthesis (Level 2). Lastly (Level 3), the application of the hybrid model for comprehensive window-of-operation analysis and constrained optimization of the GG production (~250 g/L) was demonstrated. Using two candidate sucrose phosphorylases (from <em>Leuconostoc mesenteroides</em> and <em>Bifidobacterium adolescentis</em>), we reveal the hybrid model as a powerful tool of “process decision making” to guide rational selection of the best-suited enzyme catalyst. Our study exemplifies a closing of the gap between enzyme kinetic models considered for mechanistic research and applicable in technologically relevant reaction conditions; and it highlights the important benefit thus realizable for biocatalytic process development.</p>
Fig. 28 in A revision of the Palaearctic Pimeliini (Coleoptera: Tenebrionidae): a comparative analysis and systematic position of Eastern European and Asian taxa with dorso-lateral eyes
Fig. 28. Protibiae of Pimeliini, SEM. A. Przewalskia dilatata (Reitter, 1887), ♂ (ZIN), dorsal view. B. Ditto, ventral view. C. Earophanta serrata (Semenov, 1893), ♂ (ZIN), dorsal view. D. Platyope leucogramma (Pallas, 1773),♂ (ZIN), dorsal view. E. Platyope grumi (Semenov, 1893), ♂, paralectotype (ZIN), dorsal view.
Fig. 16. Habrobates vernalis Semenov, 1903 in A revision of the Palaearctic Pimeliini (Coleoptera: Tenebrionidae): a comparative analysis and systematic position of Eastern European and Asian taxa with dorso-lateral eyes
Fig. 16. Habrobates vernalis Semenov, 1903, genitalia (ZIN). A. Tegmen of aedeagus, ventrally. B. Ditto, dorsally. C. Ditto, laterally. D. Median lobe, ventrally. E. Ditto, dorsally. F. Ditto, laterally. G. Spiculum gastrale. H. Ditto, ventro-lateral view. I. ♂, inner sternite VIII. J. ♀, inner sternite VIII and spiculum ventrale. K. Ovipositor, ventrally. L. Ditto, dorsally. M. Ditto, laterally. Not to scale. Abbreviations: see Material and methods.
Fig. 21 in A revision of the Palaearctic Pimeliini (Coleoptera: Tenebrionidae): a comparative analysis and systematic position of Eastern European and Asian taxa with dorso-lateral eyes
Fig. 21. Platyope grumi (Semenov, 1893), genitalia (ZIN). A. Tegmen of aedeagus, ventrally. B. Ditto, dorsally. C. Ditto, laterally. D. Median lobe, ventrally. E. Ditto, dorsally. F. Ditto, laterally. G. Spiculum gastrale, ventrally. H. Ditto, ventro-lateral view. I. ♂, inner sternite VIII. J. ♀, inner sternite VIII and spiculum ventrale. K. ♀, paralectotype?, ovipositor, ventrally. L. Ditto, dorsally. M. Ditto, laterally. Not to scale. Abbreviations: see Material and methods.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.