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Dataset results
1,073 results for “comparative expression”
Comparative Analysis of Gene expression profile in the Adipose Tissue of Obese Adult Mice with Rapid Infantile Growth after Undernourishment in utero
GEO Series GSE188306. Mus musculus. 16 samples. Type: Expression profiling by array.
Comparative analysis of gene expression changes during differentiation in the Drosophila wing
GEO Series GSE36015. Drosophila melanogaster. 24 samples. Type: Expression profiling by array.
Comparative gene expression profiling in livers of A1cf-transgenic and wild-type mice
GEO Series GSE157516. Mus musculus. 1 samples. Type: Expression profiling by array.
Comparing expression in livers of 1-month vs 6-month old mice
GEO Series GSE103069. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Expression data from transgenic Drosophila melanogaster adults which contain a knockdown effector of cyp6g1, compared to control flies
GEO Series GSE27344. Drosophila melanogaster. 14 samples. Type: Expression profiling by array.
Altered expression of microRNAs in PC-3 sphere cells of prostate cancer compared with PC-3 adherent cells
GEO Series GSE44069. Homo sapiens. 2 samples. Type: Non-coding RNA profiling by array.
Comparative gene expression profile of PPARg and RARa ligand treated human dendritic cells
GEO Series GSE5679. Homo sapiens. 11 samples. Type: Expression profiling by array.
Expression data from yeast strain containing CDC34tm allele compared to WT
GEO Series GSE8453. Saccharomyces cerevisiae; Schizosaccharomyces pombe. 8 samples. Type: Expression profiling by array.
Gene expression profiles of CD8+ partial memory T cells (Tpm) compared to naive, effector and memory CD8+ T cells
GEO Series GSE27139. Mus musculus. 34 samples. Type: Expression profiling by array.
Comparing RNA-Seq and microarray gene expression data in two zones of the Arabidopsis root apex relevant to spaceflight
GEO Series GSE115555. Arabidopsis thaliana. 12 samples. Type: Expression profiling by array; Expression profiling by high throughput sequencing.
Comparing RNA-Seq and microarray gene expression data in two zones of the Arabidopsis root apex relevant to spaceflight.
Premise of the study: The root apex is an important region involved in environmental sensing, but comprises a very small part of the root. Obtaining root apex transcriptomes is therefore challenging when the samples are limited. The feasibility of using tiny root sections for transcriptome analysis was examined, comparing RNA sequencing (RNA-Seq) to microarrays in characterizing genes that are relevant to spaceflight.Methods:Arabidopsis thaliana Columbia ecotype (Col-0) roots were sectioned into Zone 1 (0.5 mm; root cap and meristematic zone) and Zone 2 (1.5 mm; transition, elongation, and growth-terminating zone). Differential gene expression in each was compared.Results: Both microarrays and RNA-Seq proved applicable to the small samples. A total of 4180 genes were differentially expressed (with fold changes of 2 or greater) between Zone 1 and Zone 2. In addition, 771 unique genes and 19 novel transcriptionally active regions were identified by RNA-Seq that were not detected in microarrays. However, microarrays detected spaceflight-relevant genes that were missed in RNA-Seq. Discussion: Single root tip subsections can be used for transcriptome analysis using either RNA-Seq or microarrays. Both RNA-Seq and microarrays provided novel information. These data suggest that techniques for dealing with small, rare samples from spaceflight can be further enhanced, and that RNA-Seq may miss some spaceflight-relevant changes in gene expression.
A global comparative analysis of gene expression in ovules and leaves based on integrated De Novo transcriptome assembly of Ginkgo biloba L.
GEO Series GSE64502. Ginkgo biloba. 2 samples. Type: Expression profiling by high throughput sequencing.
Differential expression analysis of HFF cells in G0 phase compared to cells in G1 [MAT]
GEO Series GSE36156. Homo sapiens. 14 samples. Type: Expression profiling by genome tiling array.
Comparative genome-scale analysis of Pichia pastoris variants informs selection of an optimal base strain [protein expression]
GEO Series GSE135665. Komagataella phaffii. 72 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq gene expression profiling comparing ∆vsrA and ∆scmA∆vsrA Caulobacter crescentus NA1000 cells
GEO Series GSE286547. Caulobacter vibrioides NA1000. 6 samples. Type: Expression profiling by high throughput sequencing.
Comparative gene expression analysis between Nipponbare and 6-4 under two conditions
GEO Series GSE6187. Oryza sativa Japonica Group; Oryza sativa. 6 samples. Type: Expression profiling by array.
Transcriptome analysis of differential expressed genes in B cell lymphomas from myeloid-specific Beclin-1 (Becn1ΔM) KO mice compared to (wild type) WT cervical lymph node controls.
GEO Series GSE132899. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Comparative Chromatin Dynamics and Expression Profiles of Neural Progenitor and Definitive Endoderm Lineage Differentiation in Two Mammalian Species
GEO Series GSE164361. Rattus norvegicus; Homo sapiens. 118 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
RNA-Seq gene expression profiling in the plant growth promoting Bacillus atrophaeus UCMB-5137 revealed an alternative strategy of plant colonization compared to Bacillus amyloliquefaciens endophytes
GEO Series GSE68543. Bacillus atrophaeus. 5 samples. Type: Expression profiling by high throughput sequencing.
Comparative expression analysis of the Arabidopsis CK-signaling ahp4-1 mutant and wild type (WT) plants (Col-0) under dehydration conditions
GEO Series GSE95614. Arabidopsis thaliana. 18 samples. Type: Expression profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.