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915
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Dataset results
915 results for “metagenomics”
Supplementary material 7 from: Macher T-H, Schütz R, Yildiz A, Beermann AJ, Leese F (2023) Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: e103856. https://doi.org/10.3897/mbmg.7.103856
Protocol for the adapted NucleoMag Tissue Kit
Supplementary material 5 from: Macher T-H, Schütz R, Yildiz A, Beermann AJ, Leese F (2023) Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: e103856. https://doi.org/10.3897/mbmg.7.103856
List of all ambiguous assignments
Supplementary material 11 from: Macher T-H, Schütz R, Yildiz A, Beermann AJ, Leese F (2023) Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: e103856. https://doi.org/10.3897/mbmg.7.103856
Python scripts used in this study
Supplementary material 6 from: Macher T-H, Schütz R, Yildiz A, Beermann AJ, Leese F (2023) Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: e103856. https://doi.org/10.3897/mbmg.7.103856
List of over splitting rates per primer pair for each detected species
Supplementary material 10 from: Macher T-H, Schütz R, Yildiz A, Beermann AJ, Leese F (2023) Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: e103856. https://doi.org/10.3897/mbmg.7.103856
Processed and manually curated TaXon tables of each primer pair
Deepurify: a multi-modal deep language model to remove contamination from metagenome-assembled genomes
<p>The SIM1 testing set.</p>
Brown 23 et al - Metagenome Assembled Genomes from Activated Sludge Bioreactors
<p>in this folder are the gtdb classifications, checkm output, and a fasta file for each MAG</p>
Pilot Study of the Human Metagenome in Metabolic Diseases
ClinicalTrials.gov study NCT06363253. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
"Answers in Hours" A Randomized Controlled Trial Using Microbiome Metagenomics for Bile Duct Cultures
ClinicalTrials.gov study NCT05523154. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Microbiome and Metagenome in Percutaneous Osseointegrated Prostheses (MMPOP)
ClinicalTrials.gov study NCT02564432. IPD Sharing: NO. Countries: 1. Publications: 0.
SH-DS01 on Fecal Metagenomic Stability
ClinicalTrials.gov study NCT04598295. IPD Sharing: NO. Countries: 1. Publications: 0.
Advanced Metagenomic Analysis of Human Colonic Microbiota in Patients With Chronic GI Disorders
ClinicalTrials.gov study NCT01099111. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Parkinson's Research In Metagenomic Early Stage Biomarkers
ClinicalTrials.gov study NCT07097103. IPD Sharing: NO. Countries: 0. Publications: 0.
Data from: A new plant virus discovered by immunocapture of double stranded RNA; assessment of a novel approach for viral metagenomics studies
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Unmasking viral sequences by metagenomic next-generation sequencing in adult human blood samples during steroid-refractory/dependent graft-versus-host disease
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Data from: Protein structure determination using metagenome sequence data
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Data from: Metagenomic sequencing detects respiratory pathogens in hematopoietic cellular transplant patients
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Zoo elephant metagenomic Kraken2 reports
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Data from: Potential and pitfalls of eukaryotic metagenome skimming: A test case for lichens
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Data from: Comparing the effectiveness of metagenomics and metabarcoding for diet analysis of a leaf-feeding monkey (Pygathrix nemaeus)
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.