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Dataset for "Species diversity and molecular characterization of Alternaria section Alternaria isolates collected mainly from cereal crops in Canada" by Jeremy R. Dettman, Quinn Eggertson, and Natalie E. Kim
<p>Dataset consists of three files, each containing aligned nucleotide sequences from 559 Alternaria strains. The three sequenced loci are ASA-10, ASA-19, and rpb2. Strain names are stated in the header of each sequence.</p>
Datasets and R source code of manuscript "No evidence for an effect of chronic boat noise on the fitness of reared water fleas"
<p>Datasets and R source code of manuscript "No evidence for an effect of chronic boat noise on the fitness of reared water fleas"</p> <p>Experiments : exposition of Daphnia magna to boatnoise or silence along all their life. Measure of survival and clonal reproduction.</p>
Armed to the teeth: Supplementary material, R code, Rdata, mesh, landmarks
<p>The structure, composition, and shape of teeth have been related to dietary specialization in many vertebrate species, but comparative studies on snakes' teeth are lacking. Yet, snakes have diverse dietary habits that may impact the shape of their teeth. We hypothesize that prey properties, such as hardness and shape, as well as feeding behavior, such as aquatic or arboreal predation, or holding vigorous prey, impose constraints on the evolution of tooth shape in snakes. We compared the morphology of the dentary teeth of 63 species that cover the phylogenetic and dietary diversity of snakes, using 3D geometric morphometrics and linear measurements. Our results show that prey hardness, foraging substrate, and the main foraging mechanical challenge are important drivers of tooth shape, size, and curvature. Overall, long, slender, curved teeth with a thin layer of hard tissue are observed in species that need to maintain a grip on their prey. Short, stout, less curved teeth are associated with species that undergo high or repeated loads. Our study demonstrates the diversity of tooth morphology in snakes and the need to investigate its underlying functional implications to better understand the evolution of teeth in vertebrates.</p>
Transcriptomes for Ranitomeya imitator and R. variabilis: Evidence for a Parabasalian Gut Symbiote in Egg-Feeding Poison Frog Tadpoles in Peru
<p>This dataset contains the assembled transcriptomes for our paper. The three assemblies are for <em>Ranitomeya imitator, R. variabilis, </em>and a merged assembly of the two species. For methodological details, see the published manuscript.</p>
FIG. 5. — Russula pseudocatillus F. Yuan & Y in Russula viridicinnamomea F. Yuan & Y. Song, sp. nov. and R. pseudocatillus F. Yuan & Y. Song, sp. nov., two new species from southern China
FIG. 5. — Russula pseudocatillus F. Yuan & Y. Song, sp. nov.: K16042406 (GDGM 75338, holotype): A, Basidia; B, Pleurocystidia; C, Cheilocystidia; D, Pileocys- tidia; E, Caulocystidia; F, Pileipellis. Scale bars: 10 μm.
FIG. 4. — Russula pseudocatillus F. Yuan & Y in Russula viridicinnamomea F. Yuan & Y. Song, sp. nov. and R. pseudocatillus F. Yuan & Y. Song, sp. nov., two new species from southern China
FIG. 4. — Russula pseudocatillus F. Yuan & Y. Song, sp. nov.: K16042406 (GDGM 75338, holotype). A, B, fruiting bodies; C, D, Terminal elements of pileipellis; E, F, Scanning electronic micrographs of basidiospores. Scale bars: A, B, 1 cm; C, D, 10 μm; E, F, 1 μm.
FIG. 3. — Russula viridicinnamomea F. Yuan & Y in Russula viridicinnamomea F. Yuan & Y. Song, sp. nov. and R. pseudocatillus F. Yuan & Y. Song, sp. nov., two new species from southern China
FIG. 3. — Russula viridicinnamomea F. Yuan & Y. Song, sp. nov. K15091418 (GDGM 75339, holotype). A, Basidia; B, Pleurocystidia; C, Cheilocystidia; D, Pileocystidia; E, Caulocystidia; F, Pileipellis. Scale bars: 10 μm.
FIG. 2. — Russula viridicinnamomea F. Yuan & Y in Russula viridicinnamomea F. Yuan & Y. Song, sp. nov. and R. pseudocatillus F. Yuan & Y. Song, sp. nov., two new species from southern China
FIG. 2. — Russula viridicinnamomea F. Yuan & Y. Song, sp. nov.: K15091418 (GDGM 75339, holotype). A, B, Fruiting bodies; C, Pileipellis; D, Terminal elements of pileipellis; E,F, Scanning electronic micrographs of basidiospores. Scale bars: A-B, 1 cm; C, 100 μm; D, 10 μm; E-F, 1 μm.
FIG. 1 in Russula viridicinnamomea F. Yuan & Y. Song, sp. nov. and R. pseudocatillus F. Yuan & Y. Song, sp. nov., two new species from southern China
FIG. 1. — Maximum-likelihood tree of Russula subg. Heterophyllidia based on ITS sequences performed by RAxML. Bootstrap values higher than 70% are shown, two novel species are shown in bold.
FIG. 15. — B, C, F, H, I, K, M-P, R, S in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 15. — B, C, F, H, I, K, M-P, R, S, Halodiatrype salinicola Dayarathne & K.D.Hyde (MFLU 15-0179 – holotype); A, D, E, G, J, L, O, P, T, U, Halodiatrype avicenniae Dayarathne & K.D.Hyde (MFLU 16-1185 – holotype and MFLU – 16-1197):A, B, horizontal section of ascoma (MFLU 16-1185,MFLU 15-0179);C, D, vertical section through ascoma (MFLU 15-0179, MFLU 16-1185); E, F, peridium (MFLU 16-1185, MFLU 15-0179); G, H, section through neck (MFLU 16-1185, MFLU 15-0179); I, J, asci (MFLU 15-0179 (in Congo red), MFLU 16-1185); K, L, paraphyses (MFLU 15-0179, MFLU 16-1185); M-P, ascospores (MFLU 15-0179, MFLU 16-1185); Q, conidia from culture on PDA (MFLU 18-0150); R-U, culture on PDA (MFLU 15-0179, MFLU 16-1185) Scale bars: A, 1000 µm; B, 500 µm; C, D, I-L, 100 μm; E, F, Q, 20 μm; G-H, 50 μm; M-P, 10 μm
Fig. 5. A in Review of Quedius (Coleoptera, Staphylinidae) described from the 1934 expedition by R. Malaise to Myanmar
Fig. 5. A. Malaisdius ruficeps (Scheerpeltz, 1965), dorsal abdomen. B. M. smetanai gen. et sp. nov., dorsal abdomen. C–E. Quedius (Microsaurus) rutilipennis Scheerpeltz, 1965. C. Antenna. D. Pronotum (white arrow: marginal punctures removed from marginal bead; black arrow: anterior angles with marginal bead entirely visible in dorsal view). E. Elytra and basal abdomen. F. Q. (M.) masasatoi Smetana, 2007, pronotum (arrows indicating punctures of the dorsal row). Abbreviation: Pf = posterior frontal puncture. Scale bars: A–B, D–E = 1 mm; C, F = 0.5 mm.
Fig. 2. A–E. Dorsal habitus. A in Review of Quedius (Coleoptera, Staphylinidae) described from the 1934 expedition by R. Malaise to Myanmar
Fig. 2. A–E. Dorsal habitus. A. Malaisdius ruficeps (Scheerpeltz, 1965), ♂, paratype (NHW). B. Malaisdius smetanai gen. et. sp. nov., ♂, holotype (NME). C. Quedius (Microsaurus) rutilipennis Scheerpeltz, 1965, ♂, holotype (NHRS). D. Q. (M.) piceolineatus Scheerpeltz, 1965, ♂ holotype (NHRS). E. Q. (M.) impressithorax Scheerpeltz, 1965, ♀ holotype (NHRS). F. Forebody of Q. (M.) impressithorax Scheerpeltz, 1965. Abbreviation: Pf = posterior frontal puncture. Scale bars = 1 mm.
Fig. 1 in Review of Quedius (Coleoptera, Staphylinidae) described from the 1934 expedition by R. Malaise to Myanmar
Fig. 1. Habitus of Indoquedius described by Scheerpeltz (1965). A. I. malaisei, ♂, holotype (NHRS). B. I. micantiventris, ♂, holotype (NHRS). C. I. dispersepunctatus, ♀, holotype (NHRS). D. I. parallelicollis, ♀, paratype (NHW). E. I. sanguinipennis syn. nov. (= I. parallelicollis), ♀, holotype (NHRS). F. I. recticollis, ♀, holotype (NHRS). Scale bars = 1 mm.
Fig. 4. A–B in Review of Quedius (Coleoptera, Staphylinidae) described from the 1934 expedition by R. Malaise to Myanmar
Fig. 4. A–B. Indoquedius dispersepunctatus (Scheerpeltz, 1965). A. Elytra. B. Dorsal abdomen. C–D. I. recticollis (Scheerpeltz, 1965). C. Elytra. D. Dorsal abdomen. E–F. Malaisdius smetanai gen. et sp. nov. E. Head. F. Elytra. Abbreviations: Af = anterior frontal puncture; b = basal puncture; pf = posterior frontal puncture; sa = supraantennal puncture. Scale bars = 1 mm.
Fig. 3. Dorsal habitus. A in Review of Quedius (Coleoptera, Staphylinidae) described from the 1934 expedition by R. Malaise to Myanmar
Fig. 3. Dorsal habitus. A. Quedius (Raphirus) semilaeviventris Scheerpeltz, 1965, holotype, ♂ (NHRS). B. Q. (R.) kambaitiensis Scheerpeltz, 1965 syn. nov. (= Q. (R.) muscicola Cameron, 1932), ♀, holotype (NHRS). Scale bars = 1 mm.
Fig. 7. Female tergite X. A in Review of Quedius (Coleoptera, Staphylinidae) described from the 1934 expedition by R. Malaise to Myanmar
Fig. 7. Female tergite X. A. Indoquedius dispersepunctatus (Scheerpeltz, 1965). B. I. parallelicollis (Scheerpeltz, 1965). C. I. recticollis (Scheerpeltz, 1965). D. Malaisdius ruficeps (Scheerpeltz, 1965). E. Quedius (Microsaurus) rutilipennis Scheerpeltz, 1965. F. Q. (M.) impressithorax Scheerpeltz, 1965. Scale bars = 0.1 mm.
Fig. 6. A, F, H–I, K–L in Review of Quedius (Coleoptera, Staphylinidae) described from the 1934 expedition by R. Malaise to Myanmar
Fig. 6. A, F, H–I, K–L. Aedeagus, in situ. A, F, H, K. Ventral view (inset showing paired teeth). I, L. Lateral view. B–D. Median lobe. B. Ventral view. C–D. Lateral view. E, G, J, M. Underside of paramere. A–E. Malaisdius ruficeps (Scheerpeltz, 1965). F–G. M. smetanai gen. et sp. nov. H–J. Quedius (Microsaurus) piceolineatus Scheerpeltz, 1965. K–M. Q. (M.) masasatoi Smetana, 2007. Scale bars: A–D, F, H–I, K–L = 0.5 mm; E, G, J, M = 0.1 mm.
Datasets and R source code of manuscript "From behaviour to complex communities: Resilience to anthropogenic noise in a fish-induced trophic cascade" by Emilie Rojas et al.
<p>Datasets and R source code of manuscript "From behaviour to complex communities: Resilience to anthropogenic noise in a fish-induced trophic cascade" by Emilie Rojas et al.</p>
Red deer growth data and R code for analysis
<p>Dataset and R code (Rmd-file) for analysis of seasonal growth of body weight in red deer. </p> <p>Supplementary material for the paper "Shifting seasonality of annual growth through ontogeny for red deer at northern latitudes".</p> <p>This study was part of the AgriDeer project (318575), funded by the Research Council of Norway.</p>
Figs 46–48. Aequipecten commutatus peripheralis subsp. n. 46–47. Holotype, NMSA E8964, off Matigulu R in The family Pectinidae in South Africa and Mozambique (Mollusca: Bivalvia: Pectinoidea)
Figs 46–48. Aequipecten commutatus peripheralis subsp. n. 46–47. Holotype, NMSA E8964, off Matigulu R., Zululand, 200–220 m, 19.4 x 18.4 mm. 46. LV exterior. 47. LV interior. 48. Paratype, NMSA E8964, same loc., 19.4 x 18.3 mm, RV interior.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.