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opennotspecifiedDec 2021View details →

FIGURE 1 in Wyeomyia shannoni Lane & Cerqueira, 1942, a taxonomic puzzle (Diptera: Culicidae): synonymy, genus transfer, homonymy, and description of a new species of Sabethes Robineau-Desvoidy, 1827

FIGURE 1. Sabethes (Peytonulus) shannoni. A, Female: habitus (lateral). B–D, Holotype male: B, thoracic pleura (prealar setae absent); C, D, gonostylus.

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Data from: Systematic evaluation of horizontal gene transfer between eukaryotes and viruses

Gene exchange between viruses and their hosts acts as a key facilitator of horizontal gene transfer and is hypothesized to be a major driver of evolutionary change. Our understanding of this process comes primarily from bacteria and phage co-evolution, but the mode and functional importance of gene transfers between eukaryotes and their viruses remains anecdotal. Here we systematically characterized viral-eukaryotic gene exchange across eukaryotic and viral diversity, identifying thousands of transfers, and revealing their frequency, taxonomic distribution, and projected functions. Eukaryote-derived viral genes, abundant in the Nucleocytoviricota, highlighted common strategies for viral host-manipulation, including metabolic reprogramming, proteolytic degradation, and extracellular modification. Furthermore, viral-derived eukaryotic genes implicate genetic exchange in the early evolution and diversification of eukaryotes, particularly through viral-derived glycosyltransferases, which have impacted structures as diverse as algal cell walls, trypanosome mitochondria, and animal tissues. These findings illuminate the nature of viral-eukaryotic gene exchange and its impact on the evolution of viruses and their eukaryotic hosts.

opencc-zeroDec 2021View details →

Dataset for Overriding lithospheric strength affects continental collisional mode selection and subduction transference: Implications for Greater

This .zip file is the relative dataset for the models of Overriding lithospheric strength affects continental collisional mode selection and subduction transference: Implications for Greater India-Asia convergent system.

A Dual Anchoring Strategy for the Directed Evolution of Improved Artificial Transfer Hydrogenases Based on Carbonic Anhydrase

Data underlying the figures in the publication “A Dual Anchoring Strategy for the Directed Evolution of Improved Artificial Transfer Hydrogenases Based on Carbonic Anhydrase”, published in ACS Cent. Sci. 2021, 7, 11, 1874–1884. <a href="https://pubs.acs.org/doi/full/10.1021/acscentsci.1c00825">https://pubs.acs.org/doi/full/10.1021/acscentsci.1c00825</a> Table of contents: 1. Triplicates_20210118-YC-NCCR.xlsx: Experimental data for Figures 3e. 2. HRMS_Data.pdf: HRMS data for Table 3. 3. Table4_Raw.xlsx: Raw data for Table 4. 4. Table1_Table2_Raw.xlsx: HRMS data for Table 1 and Table 2. 5. Preparative.xlsx: Raw data for Table 2, entries 10 and 11.

Modeling Data from "The VLA/ALMA Nascent Disk and Multiplicity (VANDAM) Survey of Orion Protostars. Insights from Radiative Transfer Modeling"

This dataset includes the results from the radiative transfer modeling done in the paper "The VLA/ALMA Nascent Disk and Multiplicity (VANDAM) Survey of Orion Protostars: Insights from Radiative Transfer Modeling" by Sheehan et al. Included are the full posteriors from the model fitting for each source as a Python pickle file that contains a dictionary with keys given by the source names, e.g. "HOPS-2", that point to numpy arrays containing the posterior distributions. The information can be loaded like so: <pre><code class="language-python">import pickle data, keys = pickle.load(open("posteriors.p","rb"))</code></pre> Here "keys" is a list containing the names of the parameters from the model fit that are a part of the posterior distribution for each source. Also included are the configuration files and datasets used in the modeling for each source, as well as the results from the fit so that anyone can work with these models for their own purposes. An example script that shows how to use these files is included, and further information can be found at <a href="http://pdspy.readthedocs.io">http://pdspy.readthedocs.io</a>.

Data and scripts for manuscript "Full-field modeling of heat transfer in asteroid regolith 2: Effects of porosity"

Includes summary spreadsheet, solution files (zipped) in vtk format, and scripts. Vtk filenames are the same as those listed in the tables in the supplement to the JGR:Planets paper.

FIGURE 3 in Transfer of Millettia pachycarpa and M. entadoides to Derris (Fabaceae), supported by morphological and molecular data

FIGURE 3. Derris taiwaniana (Hayata) Z.Q. Song. A. habit; B. stem with brown lenticels; C. leaflets, adaxial and abaxial view, scale bar = 2 cm; D. leaves; E. flowering branchlets; F. pseudoraceme, showing distinct brachyblasts; G. part of inflorescence; H. part of inflorescence with unopened flowers; I. flower and dissection of a flower, scale bar = 2 cm; J. part of ovary, showing 7 ovules; K. old pods covered with warts outside and reniform seeds, scale bar = 4 cm. Photographs by Zhu-Qiu Song (A–C, E–J), You-Sheng Chen (D), and Bo Pan (K).

FIGURE 5 in Transfer of Millettia pachycarpa and M. entadoides to Derris (Fabaceae), supported by morphological and molecular data

FIGURE 5. Distribution of Derris entadoides (Z. Wei) Z.Q. Song (red triangle) and Derris taiwaniana (Hayata) Z.Q. Song (blue dots, made by the software ArcGIS 10.2).

FIGURE 1 in Transfer of Millettia pachycarpa and M. entadoides to Derris (Fabaceae), supported by morphological and molecular data

FIGURE 1. Isotype of Derris entadoides (Z. Wei) Z.Q. Song (Chi-Wu Wang 72150, A00283892, https://kiki.huh.harvard.edu/databases/ specimen_search.php?barcode=A00283892). © Copyright of the Herbarium of the Arnold Arboretum of Harvard University.

FIGURE 4 in Transfer of Millettia pachycarpa and M. entadoides to Derris (Fabaceae), supported by morphological and molecular data

FIGURE 4. Consensus tree of maximum likelihood (ML) analysis of the combined dataset of all four markers (trnK-matK, trnL-F IGS, psbA-trnH IGS and ITS). Numbers near branches are SH-aLRT and ultrafast bootstrap (UFBoot) support values. Samples of Derris species were indicated with red fonts, and those of Millettia species were indicated with blue fonts. The Paraderris subclade (i.e. the DP subclade) within the clade D2 of the genus Derris is indicated in the shaded box.

FIGURE 2 in Transfer of Millettia pachycarpa and M. entadoides to Derris (Fabaceae), supported by morphological and molecular data

FIGURE 2. Derris entadoides (Z. Wei) Z.Q. Song. A. habit; B. stem with brown lenticels; C. cross section of stem, showing pithy inside; D. leaf, adaxial view; E. leaf, abaxial view, showing glaucous surface beneath; F. flowering branchlets; G. pseudoraceme, showing distinct brachyblasts; H. part of inflorescence with opened flowers; I. part of inflorescence with unopened flowers; J. brachyblast with one flower, and dissection of a flower, scale bar = 1 cm; K. part of ovary, showing 5 ovules; L. old pods, scale bar = 4 cm. Photographs by Zhu-Qiu Song

Increased artificiality trend driven by an inter-basin water transfer on the Zayandeh-rud River floodplain

Khosro Fazelpoor: contributed to the design and implementation of the research, Formal analysis and to the writing of the manuscript, Vanesa Martínez- Fernandez: contributed to the design and implementation of the research, Formal analysis and to the writing of the manuscript, Saleh Yousefi: contributed to the design and implementation of the research, Formal analysis and to the writing of the manuscript, Diego García de Jalon: contributed to the design and implementation of the research, Formal analysis and to the writing of the manuscript.

opencc-zeroFeb 2022View details →

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Evaluating the success of upland hay meadow restoration in the North Pennines, UK, using green hay transfer

1. Traditionally managed mesotrophic species-rich upland hay meadows conforming to the National Vegetation Classification (NVC) MG3b, are one of the rarest grassland types in the UK, with substantial declines in botanical diversity over the last 50 years. Intensive spring grazing, earlier cut dates and increases in soil fertility causes a decline in characteristic positive indicator species in MG3b meadows, shifting communities from species-rich MG3b, to NVC MG6 meadows, and finally to species-poor NVC MG7 meadows. 2. The North Pennines Area of Outstanding Natural Beauty (AONB) Partnership's Hay Time project aimed to improve the knowledge of upland hay meadows, and to investigate the success of seed addition of key positive indicator species. A landscape-scale restoration programme was undertaken between 2006 and 2012, harvesting seed from 82 species-rich donor meadows and spreading seed onto 89 receptor meadows (2282ha). Seed was harvested as green hay, using two types of donors: an MG6 donor (classed as restoration, with species such as Rhinanthus minor), or using an MG3b donor (classed as enhancement, with species such as Geranium sylvaticum). All 89 meadows were monitored, with a baseline botanical survey, and a repeat survey three to five years after seed addition. In addition, 41 meadows that did not have seed addition were monitored (controls). 3. Species-richness, diversity and floristic composition improved in 77 meadows three to five years after seed addition. Eighteen plant species had an increase in frequency in the receptor meadows but did not increase in frequency in the control meadows. The most successful were eight positive indicators which were annuals or fast-growing perennial plants (Anthoxanthum odoratum, Euphrasia spp., Myosotis discolor, Plantago lanceolata, Ranunculus acris, R. minor, Trifolium dubium and Trifolium pratense). However, rarer characteristic MG3b plants such as Alchemilla spp., G. sylvaticum, and Cirsium heterophyllum showed little signs of establishing. 4. Botanical evidence is demonstrating that seed addition using green hay is a successful way of restoring meadows to an MG6 community. What is now needed is an effective method to establish characteristic MG3b plants. Hand-collecting seeds and establishing plug plants, alongside seed addition and maintaining traditional management practises is one possible way forward.

opencc-by-4.0Feb 2022View details →

Dataset for "Broad chemical transferability in structure-based coarse-graining"

Dataset for "Broad chemical transferability in structure-based coarse-graining"

opencc-by-4.0Feb 2022View details →

N2 fixation and DDN transfer in coral reefs

Dataset for the manuscript "An efficient transfer loop of diazotroph derived nitrogen in coral reefs"

FIGURE 11 in Redescription of Pinnixa haematosticta Sakai, 1934, its transfer to Indopinnixa Manning & Morton, 1987, and a reappraisal of Indopinnixa kumejima Naruse & Maenosono, 2012 (Decapoda: Brachyura: Pinnotheridae)

FIGURE 11. Indopinnixa kumejima Naruse & Maenosono, 2012, holotype, male (2.7 × 6.5 mm), RUMF-ZC-1397. A, left gonopod 1, ventral view; B, same, distal part, dorsal view.

FIGURE 14 in Redescription of Pinnixa haematosticta Sakai, 1934, its transfer to Indopinnixa Manning & Morton, 1987, and a reappraisal of Indopinnixa kumejima Naruse & Maenosono, 2012 (Decapoda: Brachyura: Pinnotheridae)

FIGURE 14. Indopinnixa kumejima Naruse & Maenosono, 2012, female (3.6×8.0 mm), CBM-ZC 16590. A, right thoracic sternites 3–6, ventral view B, left chela, outer view (setae omitted); C, pleon and telson, external view.

FIGURE 10 in Redescription of Pinnixa haematosticta Sakai, 1934, its transfer to Indopinnixa Manning & Morton, 1987, and a reappraisal of Indopinnixa kumejima Naruse & Maenosono, 2012 (Decapoda: Brachyura: Pinnotheridae)

FIGURE 10. Indopinnixa kumejima Naruse & Maenosono, 2012, male (3.4×8.2 mm), CBM-ZC 16590. A, carapace, eyes and antennules, dorsal view (setae omitted); B, thoracic sternites 3 and 4, with distal parts of gonopods 1, ventral view (perpendicular to horizontal plane); C, right edge of sterno-pleonal cavity of thoracic sternites 5, 6 and 7, ventrolateral view; D, left thoracic sternite 8, posterior view; E, left maxilliped 3, outer view (setae omitted; exopod hidden); F, coxae of right pereopods 4 and 5; G, pleon, ventral (external) view (setae omitted); H, left gonopod 1, ventral view; I, same, distal part, dorsal view.

FIGURE 6 in Redescription of Pinnixa haematosticta Sakai, 1934, its transfer to Indopinnixa Manning & Morton, 1987, and a reappraisal of Indopinnixa kumejima Naruse & Maenosono, 2012 (Decapoda: Brachyura: Pinnotheridae)

FIGURE 6. Indopinnixa haematosticta (Sakai, 1934) n. comb., female (3.1×6.8 mm), RUMF-ZC-6000, habitus, showing living colouration. A, dorsal view; B, ventral view. Photo taken by T. Naruse.

FIGURE 3 in Redescription of Pinnixa haematosticta Sakai, 1934, its transfer to Indopinnixa Manning & Morton, 1987, and a reappraisal of Indopinnixa kumejima Naruse & Maenosono, 2012 (Decapoda: Brachyura: Pinnotheridae)

FIGURE 3. Indopinnixa haematosticta (Sakai, 1934) n. comb., male (3.6×8.3 mm), CBM-ZC 15291. A, carapace, eyes and antennules, dorsal view (setae omitted); B, frontal region, dorsal view (setae partially omitted); C, same, anterior view (setae omitted); D, right maxilliped 3, outer view (setae on dactylus omitted); E, same, ischiomerus and exopod, inner view.