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915
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ShareScore release 0.7.1
Dataset results
915 results for “metagenomics”
Data from: Metabolic characteristics of dominant microbes and key rare species from an acidic hot spring in Taiwan revealed by metagenomics
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Data from: Predicted input of uncultured fungal symbionts to a lichen symbiosis from metagenome-assembled genomes
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Data from: Metagenomic analysis reveals changes of the Drosophila suzukii microbiota in the newly colonised regions
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Data from: Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
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Metagenome assembled genomes from mouse gut microbiota
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Pooled metagenomic sequence from human stool
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Whole Metagenome Profiles of Particulates Collected from the International Space Station
The microbial composition of the International Space Station (ISS) environment is of critical interest due to potential impact of its constituents on human health and operational mission success. This study examined the whole metagenome of ISS microbes at both a species- and gene-level resolution. Air filter and dust samples from the ISS were analyzed and compared to samples collected in a terrestrial cleanroom environment. Samples were collected from ISS and cleanroom environments and treated to examine DNA from total versus viable populations. Microbial genes relevant to human health such as antimicrobial resistance and virulence genes were quantified.
Host and Microbe Blood Metagenomics Reveals Key Pathways Characterizing Critical Illness Phenotypes
GEO Series GSE236892. Homo sapiens. 189 samples. Type: Expression profiling by high throughput sequencing.
Metagenomic, metatranscriptomic and metaproteomic study of enrichment culture of M. oxyfera (denitrifying methanotroph)
GEO Series GSE18535. Candidatus Methylomirabilis oxygeniifera. 1 samples. Type: Expression profiling by high throughput sequencing.
Integrated Metagenomics and Transcriptomics Analysis Reveals Pathways Associated with Oral Periapical Lesions Formation and Progression
GEO Series GSE299006. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Metagenomic sequencing of gut microbiota associated with autism spectrum disorders patients
GEO Series GSE113540. feces metagenome. 60 samples. Type: Other.
Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in critically ill adults [paxgene]
GEO Series GSE189400. Homo sapiens. 221 samples. Type: Expression profiling by high throughput sequencing.
Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in critically ill adults [plasma]
GEO Series GSE189401. Homo sapiens. 138 samples. Type: Expression profiling by high throughput sequencing.
A Metagenomics Analysis of Pandemic 2009 H1N1 Infection in Patients in North America
GEO Series GSE24034. Homo sapiens; Viruses. 29 samples. Type: Expression profiling by array.
Harnessing Bronchoalveolar Lavage Metagenomics for Distinguishing Lung Cancer from Pulmonary Infectious Diseases
GEO Series GSE252118. Homo sapiens. 402 samples. Type: Expression profiling by high throughput sequencing.
A metagenomic study revealing unexpectedly diverse functional groups in microbial communities of deep-ground oil
GEO Series GSE55293. Bacteria; uncultured bacterium. 9 samples. Type: Other.
Synthetic metagenome
<p>Synthetic metagenome generated with randomreads.sh from the BBMap package (v38.79).</p> <p>Five bacterial genome assemblies were downloaded from NCBI:</p> <p><strong>name;genome_id;taxid</strong><br> Thermoplasmatales archaeon I-plasma;GCA_009387875;667138<br> Patulibacter medicamentivorans;GCF_000240225;1097667<br> Lachnospiraceae bacterium 2_1_46FAA;GCA_000209385;742723<br> Enterobacteriaceae bacterium LSJC7;GCA_000302695;1224136<br> Burkholderia mallei 2002721280;GCF_000011705;370895</p> <p>200,000 paired reads were generated from each genome by running:</p> <pre><code class="language-bash">randomreads.sh ref=<genome>.fna out1=<genome>_1.fq out2=<genome>_2.fq reads=200000 paired=t illuminanames=t prefix=<taxid> </code></pre> <p>The two paired fastq files were concatenated and gzipped separately.</p>
Simulted simplied metagenomics shotgun
<p>Simplified metagenomics simulation, aiming at producing a small dataset that will produce contigs when assembled and with human reads to test decontamination. Each read name contains the reference it's taken from.</p>
Giant panda metagenomic sequencing analysis table
<p>Giant panda metagenomic sequencing function analysis table</p>
Data from: Integrated metabolomics and metagenomics analysis of plasma and urine identified microbial metabolites associated with coronary heart disease
Coronary heart disease (CHD) is top risk factor for health in modern society, causing high mortality rate each year. However, there is no reliable way for early diagnosis and prevention of CHD so far. So study the mechanism of CHD and development of novel biomarkers is urgently needed. In this study, metabolomics and metagenomics technology are applied to discover new biomarkers from plasma and urine of 59 CHD patients and 43 healthy controls and trace their origin. We identify GlcNAc-6-P which has good diagnostic capability and can be used as potential biomarkers for CHD, together with mannitol and 15 plasma cholines. These identified metabolites show significant correlations with clinical biochemical indexes. Meanwhile, GlcNAc-6-P and mannitol are potential metabolites originated from intestinal microbiota. Association analysis on species and function levels between intestinal microbes and metabolites suggest a close correlation between Clostridium sp. HGF2 and GlcNAc-6-P, Clostridium sp. HGF2, Streptococcus sp. M143, Streptococcus sp. M334 and mannitol. These suggest the metabolic abnormality is significant and gut microbiota dysbiosis happens in CHD patients.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.