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9,882
datasets available to search
ShareScore release 0.9.0
Dataset results
9,882 results for “Scale”
Proteome-scale tagging and functional screening in mammalian cells by ORFtag [PRO-Seq]
GEO Series GSE240285. Mus musculus. 4 samples. Type: Other.
Village In a Dish: A Model System for Population-scale hiPSC Studies [Affymetrix]
GEO Series GSE224950. Homo sapiens. 20 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Large-scale single-cell analysis reveals critical immune characteristics of COVID-19 patients
GEO Series GSE158055. Homo sapiens. 284 samples. Type: Expression profiling by high throughput sequencing.
Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes
GEO Series GSE56869. Homo sapiens. 8 samples. Type: Other.
Large-scale analysis of longitudinal skin gene expression in systemic sclerosis reveals relationships of immune cell and fibroblast activity with skin thickness and a trend towards normalization over
GEO Series GSE181549. Homo sapiens. 339 samples. Type: Expression profiling by array.
Targeted high-resolution chromosome conformation capture at genome-wide scale in mouse erythroid cells
GEO Series GSE160229. Mus musculus. 3 samples. Type: Other.
Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection [smallRNA-Seq]
GEO Series GSE77332. Oryza sativa Indica Group. 10 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders
GEO Series GSE102122. Homo sapiens. 16 samples. Type: Expression profiling by array.
Large-scale single cell mapping of the thymic stroma identifies a new thymic epithelial cell lineage [ChIP-seq]
GEO Series GSE103969. Mus musculus. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
10XG CRAM files for "Characterization of large-scale structural variants using Linked-Reads" (Part 2 of 2)
<p>Here we propose novel algorithms to characterize large (>40 Kbp) interspersed segmental duplications, (> 80 Kbp) inversions, (> 100 Kbp) deletions, and (> 100 Kbp) translocations using Linked-Read sequencing data. Linked-Read sequencing provides long range information, where Illumina reads are tagged with barcodes that can be used to assign short reads to pools of larger (30-50 Kbp) molecules.</p> <p><br> Our methods rely on split molecule sequence signature that we have previously described. Similar to the split read, split molecules refer to large segments of DNA that span an SV breakpoint. Therefore, when mapped to the reference genome, the mapping of these segments would be discontinuous.</p> <p><br> We redesign our earlier algorithm, VALOR, to specifically leverage Linked-Read sequencing data to discover large <br> structural variation. We implement our new algorithms in a new software package, called VALOR2. </p>
Data for the paper "New Vary-Chap scale height profile retrieved from COSMIC radio occultation data"
<p>This dataset works specifically for the paper Wu et al., (2020), New Vary-Chap scale height profile retrieved from COSMIC radio occultation data:</p> <p>Fig1_data.txt: Data for Figure 1</p> <p>Fig2_data.txt: Data for Figure 2</p> <p>Fig3_data.zip: Data for Figure 3</p> <p>Fig4_5_10_11_13_14_15_16_data.zip: Data for Figure 4, Figure 5, Figure 10, Figure 11, Figure 13, Figure 14, Figure 15, Figure 16. This dataset includes many columns to provide the materials for above figures.</p> <p>Fig6_data.zip: Data for Figure 6</p> <p>Fig7_data.zip: Data for Figure 7</p> <p>Fig8_data.zip: Data for Figure 8</p> <p>Fig9_data.zip: Data for Figure 9</p> <p>Fig12_data.zip: Data for Figure 12</p>
Multi-scale simulation of flow through a wind farm during a frontal passage event
<p>Animation from a multi-scale simulation of flow through a wind farm showing hub-height wind speed during a frontal passage event. The simulation was performed using the Weather Research and Forecasting (WRF) model using an embedded generalized actuator disk (GAD) wind turbine model. This animation is included as supplementary material for the manuscript "Multi-scale simulation of wind farm performance during a frontal passage" published in<em> <a href="https://www.mdpi.com/2073-4433/11/3/245#">Atmosphere</a></em><a href="https://www.mdpi.com/2073-4433/11/3/245#"> 2020 11(3), 245</a>, Special Issue "Modeling of Atmospheric Boundary Layers at Turbulence-Resolving Grid Spacings." This work was prepared by LLNL under Contract DE-AC52-07NA27344.</p>
Dataset: Learning to Solve Large-Scale Security-Constrained Unit Commitment Problems
<p>This package contains the instance data used for the experiments presented in the paper <em>Learning to Solve Large-Scale Security-Constrained Unit Commitment Problems</em>, by Alinson S. Xavier, Feng Qiu and Shabbir Ahmed.</p>
Companion Web Page for "Empirical Evidence of Large-Scale Diversity in API Usage of Object-Oriented Software"
<p>dataset-jars-scam2013.zip:</p> <ul> <li>Content: 3 418 Jar files, which include 382 774 different types (classes or interfaces).</li> <li>Source: All Jar files present on a machine used for performing software mining experiments for 7 years.</li> </ul> <p>type-usages-20130622.zip:</p> <ul> <li>Content: All the type-usages, filtered by type of the type-usage</li> </ul> <p>Software:</p> <ul> <li>Software to extract type-usages: <a href="https://github.com/monperrus/typeusage">https://github.com/monperrus/typeusage</a></li> </ul> <p> </p> <p>Paper:</p> <pre>@inproceedings{Mendez2013, title = {Empirical Evidence of Large-Scale Diversity in API Usage of Object-Oriented Software}, author = {Mendez, Diego and Baudry, Benoit and Monperrus, Martin}, url = {<a href="https://hal.archives-ouvertes.fr/hal-00844753/file/article.pdf">https://hal.archives-ouvertes.fr/hal-00844753/file/article.pdf</a>}, booktitle = {{International Conference on Source Code Analysis and Manipulation (SCAM'2013)}}, pages = {10}, year = {2013}, doi = {<a href="https://doi.org/10.1109/SCAM.2013.6648183">10.1109/SCAM.2013.6648183</a>}, } </pre>
Figure 1 from: Łagowska B, Golan K (2020) An updated annotated checklist of scale insects (Hemiptera, Sternorrhyncha, Coccomorpha) of Poland. ZooKeys 918: 65-81. https://doi.org/10.3897/zookeys.918.49126
Figure 1 Native and alien scale insect species in different families in Poland.
2000 AU-scale cores identified by dendrogram in three massive clouds in the CMZ
<p>The full catalog of the 2000 AU-scale cores identified by dendrogram in three massive clouds in the CMZ. Paper will be submitted to AAS journals.</p>
A pore-scale 3D dynamic morphological modeling and physical characterization of hydrate-bearing sediment based on computed tomography images
<p><strong>Introduction</strong></p> <p>This supporting information includes one figure S1, which is the representative elemental volume (REV) used in this study. And the figure S1 is consisted of 300 slices with a voxel size of 4.4 μm. There are two phases in the REV: the sand and the pore.</p> <p> </p> <p>Figure S1 is uploaded with file name Figure S1-REV300.am, which is the representative elemental volume (REV) used in this study</p>
Data: Implanted satellite transmitters affect sea duck movement patterns at short and long time scales
<p>This data file consists of state-space model-derived locations and individual data used to analyze transmitter effects for sea ducks in Eastern North America and is associated with the manuscript "Implanted satellite transmitters affect sea duck movement patterns at short and long time scales" published in Condor. Columns are organized as follows:</p> <p>id - unique identifier</p> <p>species - species from which the centroid was obtained (BLSC = black scoter, COEI = common eider, LTDU = long-tailed duck, SUSC = surf scoter, WWSC = white-winged scoter)</p> <p>date - date of location (mm/dd/yy)</p> <p>jday - Julian date of location</p> <p>tracking_day - number of days post-transmitter deployment</p> <p>year - calendar year of location</p> <p>lon - longitude of location</p> <p>lat - latitude of location</p> <p>b - average assignment of location to either migrant (1) or resident (2) across all runs of the state-space model</p> <p>b.5 - most probable behavioral category based on average state assignment (1 = b ≤ 1.5 ; 2 = b > 1.5)</p> <p>sex - sex of individual (M = male, F = female)</p> <p>age - age of individual (HY = hatch year, SY = second year, TY = third year, ASY = after second year, ATY = after third year, AHY = after hatch year</p> <p>capture_reg - general area where individual was captured</p> <p>capture_subreg - specific region within capture region where individual was captured</p> <p>stage - period of the annual cycle to which the centroid belongs (W = winter, B = breeding, S = spring staging, M = fall staging and molt, WM = winter migration, BM = breeding migration, MM = molt migration, SM = spring migration)</p> <p>site - position of centroid within season (i.e., W1 = first site occupied during winter, W2 = second site occupied, etc.)</p> <p>cycle - number of annual cycles following transmitter attachment (1 = first cycle after attachment, 2 = second cycle after attachment, etc.)</p> <p>season - season of annual cycle in which centroid occurred (W = winter, F = fall, B = breeding, S = spring)</p>
The role of perception and action on the use of allocentric information in a large-scale virtual environment
<p>Final allo weights, filtered as explained in the manuscript</p>
Data repository of model outputs in Ferrier and Perron (2020), "The importance of hillslope scale in responses of chemical erosion rate to changes in tectonics and climate"
<p>This is a repository of model outputs in Ferrier and Perron (2020), "The importance of hillslope scale in responses of chemical erosion rate to changes in tectonics and climate" at the Journal of Geophysical Research - Earth Surface. See the readme file for descriptions of the data contained in each file.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.