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Figure 5 in A new form of Melitaea phoebe (Goeze, 1779) (Lepidoptera) from the Mediterranean region (Turkey)
Figure 5. Habitus of Melitaea didyma (Ankara, ODTÜ).
Figure 4 in A new form of Melitaea phoebe (Goeze, 1779) (Lepidoptera) from the Mediterranean region (Turkey)
Figure 4. Habitus of Melitaea athalia (Erzurum, Moryayla).
Figure 1 in A new form of Melitaea phoebe (Goeze, 1779) (Lepidoptera) from the Mediterranean region (Turkey)
Figure 1. Habitus and male genitalia of Melitaea phoebe. a, b: Habitus; c, d: male genitalia.
Fig. 1 in Form and formation of flares and parabolae based on new observations of the internal shell structure in lytoceratid and perisphinctid ammonoids
Fig. 1. Different expressions of flares (A) and parabolae (B).
Molecular Simulation Elaborating the Structural Mechanism of Spiri forming nitrilase from Bacillus safensis
<p><span>Nitrilases are indispensable in the biocatalytic hydrolysis of nitrile compounds, which presents promising applications in industrial biocatalysis and environmental remediation. In this study, we conduct an extensive investigation into the structural and functional properties of <em>Bacillus safensis </em>nitrilase (<em>BsNIT</em>), highlighting its assembly, substrate binding mechanisms, stability, evolutionary relationships, and active site conservation. Using a combination of molecular modeling and extensive molecular dynamics simulations, we unveil the intricate architecture of <em>BsNIT</em>, which exhibits a left-handed spiri-forming structure stabilized by interchain interactions and salt-bridge formations. The substrate-binding pocket, surrounded by aromatic residues, displays multifaceted accessibility through distinct channels. Our simulations reveal substrate-specific catalytic orientations, with glutaronitrile and 4-cyanobutanoic acid displaying stable binding, while benzonitrile exhibits a propensity for rapid product diffusion. Analysis of active site conservation emphasizes the functional significance of preserved catalytic residues, providing insights into <em>BsNIT</em>'s catalytic efficiency. This comprehensive study offers a thorough understanding of <em>BsNIT</em>'s structure-function relationships, paving the way for future advancements in enzyme engineering and bioremediation strategies targeting nitrile pollutants.</span></p>
SAXS Data of Phospholipid Mixtures forming the Inverted Hexagonal Phase
<h1>Lipids and Experimental Info</h1>
Replication package for 'Medically assisted reproduction and non-normative family forms: legislation and public opinion in Europe'
<p>Replication package for the paper "Medically assisted reproduction and non-normative family forms: legislation and public opinion in Europe", accepted for publication in <em>European Societies</em> (2024). </p> <p>This repository provides the R code to replicate the results. It utilizes data from the European Values Study (available at: https://europeanvaluesstudy.eu/) and an original database on the timing of MAR access legislation for single women and same-sex female couples in Europe. </p> <p> </p> <p> </p>
Plant forms, habitat and distribution: clipped taxa plant forms
<p>Data snapshot- aggregated from various literature and online sources, see record level metadata for details.</p> <p> </p>
Plant forms, habitat and distribution: plant forms, habitat and distribution
Aggregated from various literature and online sources, see record level metadata for details.<p></p>Aggregated from literature and online database sources.
Trait Spreadsheet to DwCA: Cellularity and growth form
<p></p>https://eol-jira.bibalex.org/browse/DATA-1882<p></p>Updated: 2022-12-31 07:28
Policy-guided Monte Carlo on general state spaces: Application to glass-forming mixtures
<p>This dataset is associated with "<a href="https://doi.org/10.1063/5.0221221">Policy-guided Monte Carlo on general state spaces: Application to glass-forming mixtures</a>" by L. Galliano, R. Rende and D. Coslovich. It includes data and workflow to reproduce the figures of the manuscript.</p> <p><strong>Requirements</strong></p> <p>A working installation of Julia (tested with version 1.10.4) is the only software required for this workflow. You can install Julia by following the instructions on the <a href="https://julialang.org/downloads/">Julia website</a>.</p> <p><strong>Dataset</strong></p> <p>Some of the simulations for this project ran for more than a week on a cluster. The Trajectories folder contains results from these simulations, which are necessary to reproduce the figures in the paper. Each folder includes a summary file detailing the simulation parameters and other files containing measured quantities such as potential energy, average acceptance, and parameter values. These folders also contain results from postprocessing the original simulation trajectories carried out with <a href="https://framagit.org/atooms/postprocessing">atooms-postprocessing</a>.</p> <p><strong>Instructions</strong></p> <p>To fully reproduce the analysis from postprocessed data, use the convenience script make at the root of the data set:</p> <p><code>./make all</code></p> <p>This comprises two main steps:</p> <ul> <li><code>./make setup</code> will set up the software environment by checking the Julia installation and installing the required packages in a virtual environment.</li> <li><code>./make workflow</code> will execute the scripts to perform the workflow from the preprocessed trajectory files in the Trajectories folder.</li> </ul> <p>There is also a <code>./make clean</code> option, which uninstalls the virtual environment and removes the results of the workflow.</p> <p><strong>Notes</strong></p> <ul> <li><em>Figure 3</em>: This figure is the result of a two-dimensional simulation that requires the complete Policy-guided Monte Carlo code. Consequently, it is not reproduced by this workflow.</li> <li><em>Figure formats</em>: The Julia scripts generate figures in SVG format. After producing the figures, you can use the <code>./make pdf</code> option to convert them to PDF files. This option requires a working installation of Inkscape, which can be downloaded from <a href="https://inkscape.org">Inkscape website</a></li> </ul> <p><strong>Changelog</strong></p> <ul> <li>1.0.0: initial submission</li> </ul>
Fig. 4 in Mat-forming coccoid cyanobacteria from early Silurian marine deposits of Sudetes, Poland
Fig. 4. Size−frequency histogram of cells from the early Silurian mats.
Population in Jakarta 2022 (Source form: Central Bureau of Statistics)
<p>The population pyramid graph above illustrates the population distribution in Jakarta in 2022. The 0-4 age group has a larger population compared to several age groups above it. The 30-34 age group has a slightly larger male population (388,746) than the female population (431,768). For the 65+ age group, the male and female populations are relatively balanced with slightly more females.</p> <p>This population pyramid shows a young population structure, with a wider base in the younger age group (0-19 years) and then starting to narrow in the older age group. This is an indication that Jakarta still has a fairly young population with the potential for a large population in the future.</p>
Dataset for Structure compatibility of graphite and phases formed from aluminum or magnesium phyllosilicates
<p>Dataset for contribution "Structure compatibility of graphite and phases formed from aluminum or magnesium phyllosilicates" from international conference NANOCON 2024.</p>
Tab. 4 in The local forms of Zootecus (Gastropoda: Pulmonata: Subulinidae) of Pakistan: an archaeomalacological case study
<p>Tab. 4 - Values of <i>q</i> based on Tukey test. The pairs pointed out with asterisks (*) are significantly different.</p><table><tbody><tr><th>Comparison of samples</th><th><b>q</b></th></tr></tbody><tbody><tr><th>RH59 - RH480</th><td>0.5853</td></tr><tr><th>RH59 - WP31 *</th><td>4.8001</td></tr><tr><th>RH59 -WP16 *</th><td>5.9384</td></tr><tr><th>RH59 - UTHAL *</th><td>6.402</td></tr><tr><th>RH480 - WP31</th><td>1.3343</td></tr><tr><th>RH480 - WP16</th><td>1.5047</td></tr><tr><th>RH480 - UTHAL</th><td>2.8947</td></tr><tr><th>WP31 - WP16</th><td>3.4168</td></tr><tr><th>WP31 - UTHAL *</th><td>5.4741</td></tr><tr><th>WP16 - UTHAL</th><td>2.2843</td></tr></tbody></table>
Tab. 3 in The local forms of Zootecus (Gastropoda: Pulmonata: Subulinidae) of Pakistan: an archaeomalacological case study
<p>Tab. 3 - Results of ANOVA test. DF, degree of freedom; S 2, variance; F, variance ratio; P, significance level.</p><table><tbody><tr><th><b>Source of variation</b></th><th><b>Deviance</b></th><th><b>DF</b></th><th><b>S</b> <b>2</b></th><th><b>F</b></th><th><b>P</b></th></tr></tbody><tbody><tr><th>Within groups variance</th><td>107.8805</td><td>986</td><td></td><td></td><td></td></tr><tr><th>Common regression slope</th><td>0.226133</td><td>1</td><td>0.226133</td><td>2.075882</td><td><0.01</td></tr><tr><th>Between regression slopes</th><td>0.8000667</td><td>4</td><td>0.200017</td><td>1.836137</td><td><0.05</td></tr><tr><th>Error for coefficient</th><td>106.8637</td><td>981</td><td>0.108933</td><td></td><td></td></tr></tbody></table>
Tab. 2 in The local forms of Zootecus (Gastropoda: Pulmonata: Subulinidae) of Pakistan: an archaeomalacological case study
<p>Tab. 2 - Number of individuals, heights (H), diameters (D), means, roundness indices (H/D), whorl numbers and linear regression coefficient for <i>Zootecus</i> sp. of the five sites.</p><table><tbody><tr><th></th><th><b>WP 16</b></th><th><b>WP 31</b></th><th><b>UTHAL</b></th><th><b>RH 59</b></th><th><b>RH 480</b></th></tr></tbody><tbody><tr><th>Numbers of individuals</th><td>240</td><td>162</td><td>217</td><td>197</td><td>167</td></tr><tr><th>Mean H mm</th><td>10.75</td><td>11.40</td><td>11.57</td><td>11.97</td><td>10.70</td></tr><tr><th>Max H mm</th><td>13.50</td><td>13.30</td><td>14.85</td><td>17.00</td><td>12.90</td></tr><tr><th>Min H mm</th><td>8.00</td><td>9.50</td><td>8.30</td><td>10.00</td><td>8.50</td></tr><tr><th>Delta H mm</th><td>5.50</td><td>3.800</td><td>6.55</td><td>7.00</td><td>4.40</td></tr><tr><th>Mean D mm</th><td>4.69</td><td>4.85</td><td>4.80</td><td>4.19</td><td>4.87</td></tr><tr><th>Max D mm</th><td>6.00</td><td>5.60</td><td>5.50</td><td>4.85</td><td>5.60</td></tr><tr><th>Min D mm</th><td>3.80</td><td>3.90</td><td>4.10</td><td>3.70</td><td>3.50</td></tr><tr><th>Delta D mm</th><td>2.20</td><td>0.95</td><td>1.40</td><td>1.15</td><td>2.10</td></tr><tr><th>Mean roundness H/D</th><td>2.30</td><td>2.30</td><td>2.41</td><td>2.85</td><td>2.19</td></tr><tr><th>Whorl numbers</th><td>8</td><td>8</td><td>8 and 9</td><td>8 and 10</td><td>7 and 8</td></tr><tr><th>Linear regression equation</th><td>y = 0.2493x + 1.9771</td><td>y = 0.1606x + 3.0419</td><td>y = 0.302x + 1.1788</td><td>y = 0.10278x + 2.9634</td><td>y = 0.2122x + 2.5862</td></tr></tbody></table>
OH mid-infrared emission as a diagnostic of H2O UV photodissociation. III. Application to planet-forming disks
<p>This repository contains the grid of MIRI-MRS synthetic spectra presented in Tabone, van Dishoeck, and Black 2024. In this work, we include in the DALI disk model prompt emission of OH following photodissociation of H2O in its B electronic state by photons at λ < 144 nm. The propensity of forming OH in the A’ symmetric states is taken into account. H2O and OH emission is calculated from 9 to 18 micron and convolved at a spectral resolution of R=2500 to be readily compared with JWST data.</p> <p>The python script plot_model.py can be used to plot a model.</p>
Blue large-amplitude pulsators formed from the merger of low-mass white dwarfs
<p>Here you will find the files necessary to reproduce the simulations from our work using the MESA (version 23.05.01), GYRE (version 6.0.1), and COSMIC (version 3.4.10) codes.</p>
Raw data for optimization and calibration of Micellar liquid chromatography as a sustainable tool to quantify three statins in oral solid dosage forms
<p>A method based on micellar liquid chromatography has been developed to determine rosuvastatin, lovas- tatin and simvastatin in oral solid dosage forms. Samples were solved in mobile phase up to the target concentration, filtered and directly injected. The three statins were resolved in 30 min, using an aqueous solution of 0.10 M sodium dodecyl sulfate –7.0% 1-butanol, buffered at pH 3 with 0.01 M phosphate salt as mobile phase, running under isocratic mode at 1 mL/min through a C 18 column. Detection was at 240 nm. The effect of sodium dodecyl sulfate on elution strength was more important than that of the organic solvent. The procedure was successfully validated by the guidelines of the International Coun- cil for Harmonization in terms of: specificity, linearity ( r 2 > 0.990), calibration range (1.5 - 15 mg/L for rosuvastatin, 0.5–10 mg/L for lovastatin and simvastatin), limit of detection (0.4, 0.2 and 0.15 mg/L for ro- suvastatin, lovastatin and simvastatin, respectively), trueness (98.8–101.7%), precision ( < 2.7%), carry-over effect, robustness, and stability. Values were inside the acceptance criteria of the Methods, Method Veri- fication and Validation, Food and Drug Administration-Office of Regulatory Affairs, thus ensuring the re- liability of the results. The main feature was the low proportion of organic solvent used, thus making the procedure sustainable and green. Besides, it was easy-to-conduct and with high sample-throughput, and then useful for routine analysis in pharmaceutical quality control. Finally, it was applied to commercial pharmaceutical preparations.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.