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1,491
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1,491 results for “Ione”
Data from: Multigenerational exposure to silver ions and silver nanoparticles reveals heightened sensitivity and epigenetic memory in Caenorhabditis elegans
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Data from: Fast formation of a supramolecular ion gel/solvoplastic elastomer with excellent stretchability
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Data from: Electrospinning preparation of oxygen-deficient nano TiO2-x/carbon fibre membrane as a self-standing high performance anode for Li-ion batteries
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Metal ions confinement defines the architecture of G-quartet, G-quadruplex fibrils and their assembly into nematic tactoids
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REBCO mixtures with large difference in rare-earth ion size: superconducting properties of chemical solution deposition-grown Yb1−xSmxBa2Cu3O7−δ films
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Data from: Removal of Cr6+ ions from water by electricosorption on modified activated carbon fibre felt
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Data from: Chromium oxide coatings with the potential for eliminating the risk of chromium ion release in orthopaedic implants
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Capacity for freshwater acclimation and differences in the transcription of ion transporter genes underlying different migratory life histories of Takifugu fish
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Data from: Preparation of modified pomelo peel’s pulp adsorbent and its adsorption to uranyl ions
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Data from: Less is more: extreme genome complexity reduction with ddRAD using Ion Torrent semiconductor technology
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Data from: Common internal allosteric network links anesthetic binding sites in a pentameric ligand-gated ion channel
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Data from: Effects of anoxia on ATP, water, ion and pH balance in an insect (Locusta migratoria)
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Three ~50m vertical profiles of the dissolved O2/Ar ion current ratio in seawater with depth, measured at high vertical resolution using Membrane Inlet Mass Spectrometry. 2017.
Seawater was sampled via tubing with depth between the surface and ~50m, then measured for the ion current ratio of dissolved O2/Ar using Membrane Inlet Mass Spectrometry (Tortell, 2005; Kaiser et al., 2005). Measurements were conducted during the P1706 CCE-CalCOFI Process Cruise (1 Jun - 2 Jul 2017). Profiles were taken on 11 June, 15 June, and 25 June during Cycle 1, Cycle 2, and Cycle 4, respectively. Oxygen saturation and solubility were separately and concurrently measured from sampled seawater using an Aanderaa optode oxygen sensor. The ratio of seawater O2/Ar to the O2/Ar ratio at equlibration with the atmosphere is also reported. Vertical profiles of O2/Ar are used to correct surface measurements of productivity using O2/Ar for vertical influences, and can also be used to qualitatively assess profiles of community metabolic activity with depth.
Efficient Identification of Multiple Pathways: RNA-Seq Analysis of Livers from 56Fe Ion Irradiated Mice
Background: mRNA interactions with each other and other signaling molecules define different biological pathways and functions. Researchers have been investigating various tools to analyze these types of interactions. In particular gene co-expression network methods have proved useful in finding and analyzing these molecular interactions. Many different analytical pipelines to identify these interactions networks have been proposed with the aim of identifying an optimal partition of the network where the individual modules are neither too small to make any general inference or too large to be biologically interpretable. Results: In this study we propose a new pipeline to perform gene co-expression network analysis. The proposed pipeline uses WGCNA a widely used software to perform different aspects of gene co-expression network analysis and modularity maximization algorithm to analyze novel RNA-Seq data to understand the effects of low-dose 56Fe ion irradiation on the formation of hepatocellular carcinoma in mice. The network results along with experimental validation show that using WGCNA combined with Modularity provide a more biologically interpretable network in our dataset. Our pipeline showed better performance than the existing clustering algorithm in WGCNA in finding modules and identified a module with mitochondrial subunits that are supported by mitochondrial complex assay. Conclusions: We present a pipeline that can reduce the problem of parameter selection with the existing algorithm in WGCNA for comparable RNA-Seq datasets which may assist in future research to discover novel mRNA interactions and their downstream molecular effects. C57BL16 males were placed into 2 treatment groups and received the following irradiation treatments at Brookhaven National Laboratories (Long Island NY): 600 MeV/n 56Fe (0.2 Gy) and no irradiation. Left liver lobes were collected at 30 60 120 270 and 360 days post-irradiation flash frozen and stored at -80 xc2 xb0C until they could be processed for RNA-Seq. Livers were sampled by taking two 40-micron thick slices using a cryotome at -20 xc2 xb0C. This allowed multiple sampling of the tissue without the tissue going through multiple freeze/thaw cycles. Total RNA was isolated from the liver slices using RNAqueousTM Total RNA Isolation Kit (ThermoFisher Scientific Waltham MA) and rRNA was removed via Ribo-ZeroTM rRNA Removal Kit (Illumina San Diego CA) prior to library preparation with the Illumina TruSeq RNA Library kit. Samples were sequenced in a paired-end 50 base format on an Illumina HiSeq 1500. Reads were aligned to the mouse GRCm38 reference genome using the STAR alignment program version 2.5.3a with the recommended ENCODE options. The -quantMode GeneCounts option was used to obtain read counts per gene based on the Gencode release M14 annotation file. Total number of reads used in analysis varies between 23-35 millions of reads.
FoxA1 regulates sweat secretion through Best2 and Nkcc1 ion transporters
GEO Series GSE32347. Mus musculus. 18 samples. Type: Expression profiling by array.
Ion Channel Expression Patterns in Glioblastoma Stem Cells with Functional and Therapeutic Implications for Malignancy
GEO Series GSE89623. Homo sapiens. 69 samples. Type: Expression profiling by high throughput sequencing.
Multiscale profiling of tyrosine kinase inhibitor cardiotoxicity reveals mechanosensitive ion channel PIEZO1 as cardioprotective [snMultiome]
GEO Series GSE309754. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome profiling of single HEK293 cells with UMIs on Ion Torrent Proton (Run 20160225)
GEO Series GSE89235. Homo sapiens. 76 samples. Type: Expression profiling by high throughput sequencing.
The human ion channel TRPM2 modulates cell survival in neuroblastoma through E2F1 and FOXM1
GEO Series GSE197243. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Time-dependent transcriptomic changes in HNSCC cell lines after irradiation with photons or Carbon ions
GEO Series GSE198100. Homo sapiens. 328 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.