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1,773 results for “Supplementary data,”
SUPPLEMENTARY TABLE 1 in Importance of genetic data in resolving cryptic species: A century old problem of understanding the distribution of Minervarya syhadrensis Annandale 1919 (Anura: Dicroglossidae)
SUPPLEMENTARY TABLE 1. Morphometric data (in mm) of Minervarya species A (M. syhadrensis) and Minervarya species B (M. agricola / M. granosa) from Pune
Supplementary data for "History and future of the Martian dynamo and implications of a hypothetical solid inner core"
<p>This dataset contains the results of the calculations we carried out for the submitted manuscript titled "History and future of the Martian dynamo and implications of a hypothetical solid inner core". The data are organized into the following three groups: 1) radial_profiles; 2) histories; and 3) parameter_space_exploration. The first group, "radial_profiles", describes the radial density structure, and corresponding profiles of pressure, gravity, enclosed mass, and thermal expansivity for our simplified models of Earth and Mars. The second group, "histories", contains the results of our thermal evolution calculations for our reference Earth case and our five reference cases for Mars. For each case, there is a header file describing the input parameters, the derived parameters, and the contents of the accompanying tables of values. The third group, "parameter_space_exploration", contains the data that is partially illustrated in Figures 11-16, in which we show various outcomes across a wide range of multidimensional parameter space. All files are in ASCII format. Header files explain their contents in plain language and/or with reference to variables described in the paper. Data tables are tab-delimited.</p>
Supplementary Data: Yarlagadda-etal_2022_energy_and_climate_change
<p>GCAM input files needed to run the scenarios in the paper "Climate and air pollution implications of potential energy infrastructure and policy measures in India".</p>
Supplementary data for: Carter, L.C., Williamson, B.J., Tapster, S.R. et al. Crystal mush dykes as conduits for mineralising fluids in the Yerington porphyry copper district, Nevada. Commun Earth Environ 2, 59 (2021). https://doi.org/10.1038/s43247-021-00128-4
<p>Supplementary data for Carter, L.C., Williamson, B.J., Tapster, S.R. <em>et al.</em> Crystal mush dykes as conduits for mineralising fluids in the Yerington porphyry copper district, Nevada. <em>Commun Earth Environ</em> <strong>2, </strong>59 (2021). https://doi.org/10.1038/s43247-021-00128-4</p> <p>The first .xlsx file contains data from EPMA and Total-IBA analyses</p> <p>The second .xlsx file contains QEMSCAN data.</p>
Data from: Supplementary stocking selects for domesticated genotypes
Stocking of hatchery produced fish is common practise to mitigate declines in natural populations and may have unwanted genetic consequences. Here we describe a novel phenomenon arising where broodstock used for stocking may be introgressed with farmed individuals. We test how stocking affects introgression in a wild population of Atlantic salmon (Salmo salar) by quantifying how the number of adult offspring recaptured in a stocked river depend on parental introgression. We found that hatchery conditions favour farmed genotypes such that introgressed broodstock produce up to four times the number of adult offspring compared to non-introgressed broodstock, leading to increased introgression in the recipient spawning population. Our results provide the first empirical evidence that stocking can unintentionally favour introgressed individuals and through selection for domesticated genotypes compromise the fitness of stocked wild populations.
Supplementary Data to: Mediterranean diet, Alzheimer's disease biomarkers and brain atrophy in old age
<p><b>Objective:</b> To determine if following a Mediterranean-like diet (MeDi) relates to cognitive functions and <i>in vivo</i> biomarkers for Alzheimer's disease (AD), we analyzed cross-sectional data from the German Longitudinal Cognitive Impairment and Dementia Study</p> <p><b>Method:</b> The sample (n=512, mean age: 69.5±5<span>.9 years) </span><span><span>included 169 cognitively normal participants and subjects at higher AD risk (53 AD relatives, 209 SCD and 81 MCI).</span></span><span> We </span>defined MeDi adherence based on the Food Frequency Questionnaire. Brain volume outcomes were generated via voxel-based morphometry on T1-MRI and cognitive performance with an extensive neuropsychological battery. AD-related biomarkers (Aβ42/40 ratio, pTau181) in cerebrospinal fluid were assessed in n=226 individuals. We analyzed the associations between MeDi and the outcomes with linear regression models controlling for several covariates. Additionally, we applied hypothesis-driven mediation and moderation analysis. </p> <p><b>Results:</b> Higher MeDi adherence related to larger mediotemporal gray matter volume (p<0.05 FWE corrected), better memory (β±SE = 0.03 ± 0.02; p=0.038), and less amyloid (Aβ42/40 ratio, β±SE = 0.003 ± 0.001; p=0.008) and pTau181 pathology (β±SE = -1.96±0.68; p=0.004). Results were consistent correcting for ApoE- ε4 status. Mediotemporal volume mediated the association between MeDi and memory (40% indirect mediation). Finally, MeDi favorably moderated the associations between Aβ42/40 ratio, pTau181 and mediotemporal atrophy. </p> <p><b>Conclusion:</b> Our findings corroborate the view of MeDi as a protective factor against memory decline and mediotemporal atrophy. Importantly, they suggest that these associations might be explained by a decrease of amyloidosis and tau-pathology. Longitudinal and dietary intervention studies should further examine this conjecture and its treatment implications.</p>
Data from: Individual variation in winter supplementary food consumption and its consequences for reproduction in wild birds.
The provision of wild birds with supplementary food has increased substantially over recent decades. While it is assumed that provisioning birds is beneficial, supplementary feeding can have detrimental 'carry-over' effects on reproductive traits. Due to difficulties in monitoring individual feeding behaviour, assessing how individuals within a population vary in their exploitation of supplementary food resources has been limited. Quantifying individual consumption of supplementary food is necessary to understand the operation of carry-over effects at the individual level. We used Radio Frequency Identification (RFID) technology and automated feeders to estimate individual consumption of supplementary winter food in a large wild population of great tits Parus major and blue tits Cyanistes caeruleus. Using these data, we identified demographic factors that explained individual variation in levels of supplementary food consumption. We also tested for carry-over effects of supplementary food consumption on recruitment, reproductive success and a measure of survival. Individual variation in consumption of supplementary food was explained by differences between species, ages, sexes and years. Individuals were consistent across time in their usage of supplementary resources. We found no strong evidence that the extent of supplementary food consumption directly influenced subsequent fitness parameters. Such effects may instead result from supplementary food influencing population demographics by enhancing the survival and subsequent breeding of less competitive individuals, which reduce average breeding parameters and increase density-dependent competition. Carry-over effects of supplementary feeding are not universal and may depend upon the temporal availability of the food provided. Our study demonstrates how RFID systems can be used to examine individual-level behaviour with minimal effects on fitness.
Meterwavelength Single-pulse Polarimetric Emission Survey - Supplementary figures and data products
<p>These files contain all the figures in the supplementary material of Meterwavelength Single-pulse Polarimetric Emission Survey by Mitra et al. 2016, ApJ (in press). In addition there are several data products associated with these figures which include the total intensity single pulse as well as average polarization properties of 123 pulsars at two radio frequencies 333 and 618 MHz. The details of each set of files is available in the README file.</p>
Supplementary data for paper: Extremum seeking to control the amplitude and frequency of a pulsed jet for bluff body drag reduction
<p>Data accompanying the Experiments in Fluids paper entitled: Extremum seeking to control the amplitude and frequency of a pulsed jet for bluff body drag reduction. http://dx.doi.org/10.1007/s00348-016-2243-4.</p> <p>Zipped files contain the folders of data, while the .mat files contain Matlab scripts to generate the plots in the paper.</p>
FIGURES 1–3 in Re-evaluation of Tellervotrema katadara (Kuramochi, 2001) Kuramochi, 2009 (Opecoelidae: Plagioporinae) and supplementary morphological data for T. beringi (Mamaev, 1965) Gibson & Bray, 1982 with new host and locality
FIGURES 1–3. Tellervotrema katadara (Kuramochi, 2001) Kuramochi, 2009 from the bathygadine macrourid Gadomus colletti Jordan & Gilbert. 1. Holotype specimen, ventral view. 2. Male terminal genitalia of holotype specimen, ventral view. 3. Oötype region of holotype specimen, ventral view (Note: Mehlis' gland cells illustrated dorsal to all features for ease of observation; vitelline ducts are ventral to Laurer's canal but illustrated dorsal to view opening of latter; vitelline reservoir not observed in holotype, but vitelline material seen entering oviduct within duct from vitelline reservoir [Vr]). Abbreviations: At, anterior testis; C, cecum; Cp, cirrus pouch; E, egg; Ep, excretory pore; Ev, excretory vesicle; Gp, genital pore; Lc, Laurer's canal; M, metraterm; Mg, Mehlis' gland; O, ovary; Oes, oesophagus; Os, oral sucker; Ov, oviduct; P, pharynx; Pc, prostate gland-cells; Pp, pars prostatica; Pt, posterior testis; Sr, seminal receptacle; Sv, seminal vesicle; U, uterus; V, vitelline follicles; Vd, vitelline duct; Vr, vitelline reservoir; Vs, ventral sucker. Scale-bars: 1, 305 µm; 2, 190 µm; 3, 155 µm.
FIGURES 4–6 in Re-evaluation of Tellervotrema katadara (Kuramochi, 2001) Kuramochi, 2009 (Opecoelidae: Plagioporinae) and supplementary morphological data for T. beringi (Mamaev, 1965) Gibson & Bray, 1982 with new host and locality
FIGURES 4–6. Tellervotrema beringi (Mamaev, 1965) Gibson & Bray, 1982 from the longfin grenadier, Coryphaenoides longifilis Günther. 4. Composite drawing of whole specimen, dorsal view (Note: Ceca are dorsal to features herein but are illustrated ventral for ease of observation). 5. Male terminal genitalia, ventral view. 6. Composite drawing of oötype region, dorsal view (Note: Oviduct is ventral to transverse vitelline ducts but illustrated dorsal to view former). Abbreviations: At, anterior testis; C, cecum; Cp, cirrus pouch; Dsc, dark-stained cells; E, egg; Ep, excretory pore; Ev, excretory vesicle; Gp, genital pore; Lc, Laurer's canal; M, metraterm; Mg, Mehlis' gland; O, ovary; Oes, oesophagus; Os, oral sucker; Ov, oviduct; P, pharynx; Pc, prostate gland-cells; Pp, pars prostatica; Pt, posterior testis; Sr, seminal receptacle; Sv, seminal vesicle; U, uterus; V, vitelline follicles; Vd, vitelline duct; Vr, vitelline reservoir; Vs, ventral sucker. Scale-bars: 4, 350 µm; 5, 185 µm; 6, 135 µm.
Supplementary file pwt: taxa data from Black flies (Diptera: Simuliidae) of Turkish Thrace, with a new record for Turkey - Biodiversity Data Journal 3: e4834 (22 April 2015) https://doi.org/10.3897/BDJ.3.e4834
taxa data
Supplementary file pwt: United States vendors for commonly used supplies. from Collecting and Preserving Marine and Freshwater Isopoda (Crustacea: Peracarida) - Biodiversity Data Journal 3: e4912 (12 May 2015) https://doi.org/10.3897/BDJ.3.e4912
United States vendors for commonly used supplies.
SUPPLEMENTARY FIGURE 2. Tree generated from the nucleotide sequence for the mitochondrial gene region, igr1–cox1 in A taxonomic revision of Anthothela (Octocorallia: Scleraxonia: Anthothelidae) and related genera, with the addition of new taxa, using morphological and molecular data
SUPPLEMENTARY FIGURE 2. Tree generated from the nucleotide sequence for the mitochondrial gene region, igr1–cox1 of Anthothela-like specimens. Bayesian posterior probabilities shown above branch, ML bootstrap values below branch; HKY+G (Bayesian results split freq = 0.0019, 10000000 gen, burnin=25000). (* indicates nodes present only in Bayesian analysis).
SUPPLEMENTARY FIGURE 1 in A taxonomic revision of Anthothela (Octocorallia: Scleraxonia: Anthothelidae) and related genera, with the addition of new taxa, using morphological and molecular data
SUPPLEMENTARY FIGURE 1. Tree generated from the nucleotide sequence for the mitochondrial gene region, mtMutS of Anthothela-like specimens. Bayesian posterior probabilities shown above branch, ML bootstrap values below branch; HKY+G (Bayesian results split freq = 0.002, 3000000 gen, burnin=7500). (* indicates nodes present only in Bayesian analysis).
Supplementary data – OSH knowledge graph (OSH-KG)
<div> <div> <div> <p>Additional materials for the paper "Obtaining Occupational Safety and Health Insights with a Knowledge Base" that introduces the Occupational Safety and Health Knowledge Graph (OSH-KG).</p> <h2>Content</h2> <ul> <li><code>ontology.tar.gz</code> – the OSH-KG ontology. The archive contains both the individual ontology files and a merged version.</li> <li><code>queries.tar.gz</code> – SPARQL queries used in the paper, along with their results.</li> <li><code>rules.tar.gz</code> – SHACL-AF reasoning rules used in the paper.</li> <li><code>assist.tar.gz</code> – vocabulary, reasoning rules, and queries for integrating OSH-KG with data from the <a href="https://assist-iot.eu/">ASSIST-IoT project</a>.</li> <li><code>*.nq.gz</code> / <code>*.nt.gz</code> – individual named graphs of OSH-KG in the N-Quads format.</li> <li><code>*.jelly.gz</code> – individual named graphs of OSH-KG in the <a href="https://w3id.org/jelly">Jelly format</a>.</li> <li><code>code.tar.gz</code> – code in Python (Jupyter notebooks) used to generate the vocabularies and RDF translations of Eurostat data.</li> </ul> <h2>License</h2> <p>Please see LICENSE.md for details. Different resources in this repository have different licenses, but are generally freely licensed.</p> </div> </div> </div>
scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution - Supplementary data and code
<p>Data and code to reproduce the analyses from the study: "scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution". </p>
Pathways to national-scale adoption of enhanced geothermal power through experience-driven cost reductions: Supplementary Data
<p>Dataset containing inputs, results, and code referenced in "Pathways to national-scale adoption of enhanced geothermal power through experience-driven cost reductions."</p> <ul> <li>"Central_Cases.zip", "NoEGS.zip", "Policy_Sensitivities.zip", "EGS_Sensitivities_Learning.zip", "EGS_Sensitivities_Other.zip", "OtherTech_Sensitivities.zip", and "IRA_Repeal_Cases.zip" contain the full set of capacity expansion model results referenced in the paper</li> <li>"GenX_EGS_HalfTimeSeries.zip" contains the source code for the modified version of the GenX electricity system capacity expansion model used in this work</li> <li>"GenX_Input_Files.zip" contains the full set of GenX inputs used in this work, including customized run files that apply inter-planning-period linkages, conditional policies, and endogenous learning-by-doing, which may be used alongside the model source code to replicate the results</li> <li>"PowerGenome_Inputs_and_Processing.zip" contains the settings files used to create GenX inputs in the PowerGenome tool, as well as post-processing scripts used to modify certain technologies and implement 2-hourly resolution</li> <li>"Costing_and_Supply_Curves.zip" contains the source code for the EGS cost model used in this work, as well as input temperature-at-depth data from Aljubran and Horne (2024). Temperature-at-depth data from Blackwell et al. (2011) is available for purchase from the SMU Geothermal Laboratory.</li> <li>"EGS_GenX_Inputs.zip" contains other EGS performance data and scripts used to build final GenX inputs</li> </ul> <p> </p>
Supplementary data and microkinetic model for 'Key Role of CO Coverage for Chain Growth in Co-Based Fischer-Tropsch Synthesis'
<p>This repository contains:</p> <ol> <li>The DFT data (energies, frequencies and structures) of all important intermediates of the microkinetic model constructed for the publication ‘Key Role of CO Coverage for Chain Growth in Co-Based Fischer-Tropsch Synthesis’.</li> <li>Input files for the high CO coverage microkinetic model in Chemkin.</li> <li>(update 2025-06-19) Input files for the high CO coverage microkinetic model in Chemkin with CO2 activation (sim2.zip).</li> </ol> <p>DOI: <u>10.1021/acscatal.5c03024</u> and <u>10.1021/acscatal.3c04844</u></p>
Supplementary Data for "Exploring the Integration of Large Language Models in Industrial Test Maintenance Processes"
<p>This package contains supplementary data not directly included in the paper, including per-commit results for each prototype and the prompts used in the proof-of-concept implementations.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.