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11,105
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Dataset results
11,105 results for “single cells”
BRACE: A Bayesian-based dimension reduction approach for single-cell alternative splicing analysis
<p>Datasets to demonstrate the utility of our BRACE method.</p>
iPscDB single-cell data for download
<p>iPscDB has already integrated 1,118,601 cells from 182 samples of 9 plants, covering 12 tissues and 6 sequencing platforms. The scRNA-seq data from different studies were analyzed and integrated on study, tissue, and species levels with a standardized pipeline. iPscDB provides three different levels of atlas for the collected six plant species: whole plant level, tissue level and study level.</p>
Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease
<p>Collection of auxiliary data to reproduce the results from "Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease".</p> <p>Source code is available at: https://github.com/saezlab/MOFAcell</p> <p>Exceptions: Spatial data is excluded</p> <p>This folder contains processed data of the following publications, when using the data cite accordingly:<br> 1) Kuppe C, Ramirez Flores RO, Li Z, Hayat S, Levinson RT, Liao X, Hannani MT, Tanevski J, Wünnemann F, Nagai JS, et al (2022) Spatial multi-omic map of human myocardial infarction. Nature 608: 766–777<br> 2) Ramirez Flores RO, Lanzer JD, Holland CH, Leuschner F, Most P, Schultz J-H, Levinson RT & Saez-Rodriguez J (2021) Consensus Transcriptional Landscape of Human End-Stage Heart Failure. J Am Heart Assoc 10: e019667<br> 3) Reichart D, Lindberg EL, Maatz H, Miranda AMA, Viveiros A, Shvetsov N, Gärtner A, Nadelmann ER, Lee M, Kanemaru K, et al (2022) Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies. Science 377: eabo1984<br> 4) Chaffin M, Papangeli I, Simonson B, Akkad A-D, Hill MC, Arduini A, Fleming SJ, Melanson M, Hayat S, Kost-Alimova M, et al (2022) Single-nucleus profiling of human dilated and hypertrophic cardiomyopathy. Nature 608: 174–180 </p>
Quantifying Cell-State Densities in Single-Cell Phenotypic Landscapes using Mellon
<p>Processed data use in the the Mellon manuscript</p> <p>The following scanpy anndata objects are also available</p> <ol> <li>preprocessed_t-cell-depleted-bm-rna.h5ad: Anndata object for the RNA modality of the T-cell depleted bone marrow multiome dataset with normalized data, cell type annotations, clusters, pseudo time, fate propensities, MAGIC imputed expression data, cell-state densities, B-cell primed and lineage accessibility scores.</li> <li>preprocessed_t-cell-depleted-bm-atac.h5ad: Anndata object for the RNA modality of the T-cell depleted bone marrow multiome dataset with normalized data, cell type annotations, clusters, cell-state densities, B-cell primed and lineage peaks.</li> <li>preprocessed_t-cell-depleted-bm-rna-metacells.h5ad: Anndata object with metacells for the RNA modality of the T-cell depleted bone marrow multiome dataset .</li> <li>preprocessed_mouse-gastrulation-atlas.h5ad: Anndata object of the preprocessed mouse gastrulation data with normalized data, cell type annotations, clusters, pseudo time, fate propensities, MAGIC imputed expression data,</li> </ol>
Fig. 4. Single-crystal X in Diterpenoids from Euphorbia royleana reverse P-glycoprotein-mediated multidrug resistance in cancer cells
Fig. 4. Single-crystal X-ray structures of 1, 6, 7, and 8a.
Red blood cell trapping using single-beam acoustic tweezers in the Rayleigh regime
<p>Here are the datasets and original code used for the title 'Red blood cell trapping using single-beam acoustic tweezers in the Rayleigh regime.'</p>
Data accompanying "Standardised workflow for mass spectrometry-based single-cell proteomics data analysis using the scp package"
<p>Data and scripts accompanying the paper <em>Standardised workflow for mass spectrometry-based single-cell proteomics data analysis using scp</em>.</p> <ul> <li>d.zip contains raw MS data from samples run on timsTOF SCP.</li> <li>raw.zip contains raw MS data from samples run on orbitrap mass spectrometers (Orbitrap Fusion Lumos Tribrid and Exploris 240).</li> <li>mzML.zip contains raw MS data in mzML format from all samples.</li> <li>sage.zip contains output results from the sage software (results.sage.tsv and quant.tsv) as well as configuration files (results.json) for both orbitrap (cbio) and timsTOF (giga) data.</li> <li>sample_annotation.zip contains csv files with samples annotation for each acquisition batch and used to build the colData.</li> <li>example_subset.zip contains csv files for short example datasets displayed in the paper.</li> <li>scp.rds file contains the initial QFeatures object of the full dataset with 56 PSM sets corresponding to the 56 MS runs.</li> <li>build_QF_dataset.Rmd file is the script used to build the scp.rds file described above from sage outputs and sample annotation.</li> </ul> <p>These file descriptions are also available in the README.txt file.</p>
GO Enrichment Analysis on Single-Cell RNA-Seq Data
Open the record for dataset details and reuse information.
CSF Single-cell Sequencing and Proteomics of Chronic Postsurgical Pain in Patients With Lower Limb Fractures
ClinicalTrials.gov study NCT06126289. IPD Sharing: Not stated. Countries: 0. Publications: 10.
Erlotinib Plus Tivantinib (ARQ 197) Versus Single Agent Chemotherapy in Locally Advanced or Metastatic Non-Small Cell Lung Cancer
ClinicalTrials.gov study NCT01395758. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Single Agent Versus Combination Chemotherapy to Treat High-risk Elderly With Non-small Cell Lung Cancer
ClinicalTrials.gov study NCT02590003. IPD Sharing: Not stated. Countries: 1. Publications: 0.
A Study to Evaluate GBT021601-012 Single Dose and Multiple Dose in Participants With Sickle Cell Disease (SCD)
ClinicalTrials.gov study NCT04983264. IPD Sharing: NO. Countries: 1. Publications: 0.
Single Nuclei RNA-seq to Map Adipose Cellular Populations and Senescent Cells in Older Subjects
ClinicalTrials.gov study NCT05653258. IPD Sharing: YES. Countries: 1. Publications: 0.
Autologous Stem Cells for Urinary Incontinence: Single Patient Compassionate Use
ClinicalTrials.gov study NCT01648491. IPD Sharing: NO. Countries: 1. Publications: 0.
Single-cell Immune Response to Controlled Gluten Ingestion in Pediatric Celiac Disease
ClinicalTrials.gov study NCT07362654. IPD Sharing: NO. Countries: 1. Publications: 0.
Infusion of Expanded Cord Blood Cells in Addition to Single Cord Blood Transplant in Treating Patients With Acute Leukemia, Chronic Myeloid Leukemia, or Myelodysplastic Syndromes
ClinicalTrials.gov study NCT03399773. IPD Sharing: NO. Countries: 1. Publications: 0.
A Single Center, Single Arm Clinical Study on the Treatment of Advanced Non-small Cell Lung Cancer With Positive EGFR Sensitive Mutations and Failed EGFR TKIs With the Combination of Enrotinib and Pac
ClinicalTrials.gov study NCT06048315. IPD Sharing: YES. Countries: 0. Publications: 8.
A Single-arm, Phase II, Multi-center Clinical Trial of Sintilimab During the Perioperative Period in Patients With Resectable Locally Advanced Head and Neck Squamous Cell Carcinoma
ClinicalTrials.gov study NCT07379424. IPD Sharing: NO. Countries: 1. Publications: 0.
Study of a Single Dose of a 21-valent Pneumococcal Conjugate Vaccine in Children and Adolescents With Sickle Cell Disease
ClinicalTrials.gov study NCT07247188. IPD Sharing: YES. Countries: 1. Publications: 0.
Inhaled Mesenchymal Stem Cell-Derived Exosomes in the Treatment of Post-Infectious Cough: A Single-Center Randomized Controlled Clinical Trial
ClinicalTrials.gov study NCT07103980. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.