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Data from: Sleep, inflammation, and cognitive behavior of aged wild-type mice subjected to diffuse brain injury and aged 3xTg-AD mice as a model of Alzheimer's disease
<p>Identifying differential responses between sexes following traumatic brain injury (TBI) can elucidate the mechanisms behind disease pathology. Peripheral and central inflammation in the pathophysiology of TBI can increase sleep in male rodents, but this remains untested in females. We hypothesized that diffuse TBI would increase inflammation and sleep in males more so than in females. Diffuse TBI was induced in C57BL/6J mice and serial blood samples were collected (baseline, 1, 5, 7 days post‐injury [DPI]) to quantify peripheral immune cell populations and sleep regulatory cytokines. Brains and spleens were harvested at 7DPI to quantify central and peripheral immune cells, respectively. Mixed‐effects regression models were used for data analysis. Female TBI mice had 77%–124% higher IL‐6 levels than male TBI mice at 1 and 5DPI, whereas IL‐1β and TNF‐α levels were similar between sexes at all timepoints. Despite baseline sex differences in blood‐measured Ly6Chigh monocytes (females had 40% more than males), TBI reduced monocytes by 67% in TBI mice at 1DPI. Male TBI mice had 31%–33% more blood‐measured and 31% more spleen‐measured Ly6G+ neutrophils than female TBI mice at 1 and 5DPI, and 7DPI, respectively. Compared with sham, TBI increased sleep in both sexes during the first light and dark cycles. Male TBI mice slept 11%–17% more than female TBI mice, depending on the cycle. Thus, sex and TBI interactions may alter the peripheral inflammation profile and sleep patterns, which might explain discrepancies in disease progression based on sex.</p>
Physiological costs and age constraints of a sexual ornament: an experimental study in a wild bird
Sexual ornaments are often considered honest signals of quality because potential costs or constraints prevent their display by low-quality individuals. Testing for potential physiological costs of ornaments is difficult, as this requires experimentally forcing individuals to produce and display elaborate ornaments. We use this approach to test whether a sexually selected trait is physiologically costly to male superb fairy-wrens (Malurus cyaneus). Male fairy-wrens moult from brown to blue breeding plumage at different times of the year, and females strongly prefer the few males that are blue early, during winter. We used short-acting testosterone implants to stimulate males to produce 'early-blue' plumage and assessed costs during and after moult using a panel of physiological indices. Testosterone-implanted, T-males moulted in winter and produced blue plumage six weeks before control-implanted, C-males. T-males moulted while in lower body condition, had lower fat reserves, and were more likely to be parasitised by lice. However, we detected no negative effects on immune function, blood parasites, exposure to stressors, or survival. Juvenile males never naturally display early-blue plumage, but we found no evidence for increased costs paid by juvenile T-males. Instead, juvenile T-males moulted later than adult T-males, suggesting that age presents an absolute constraint on ornament exaggeration that cannot be fully overcome by testosterone treatment. Together, these small costs and large, age-related constraints may enforce signal honesty, and explain female preference for early-blue males.
Population studies of the wild tomato species Solanum chilense reveal geographically structured major gene-mediated pathogen resistance
<p>Natural plant populations encounter strong pathogen pressure and defense-associated genes are known to be under selection dependent on the pressure by the pathogens. Here we use populations of the wild tomato Solanum chilense to investigate natural resistance against Cladosporium fulvum, a well-known ascomycete pathogen of domesticated tomatoes. Host populations used are from distinct geographical origins and share a defined evolutionary history. We show that distinct populations of S. chilense differ in resistance against the pathogen. Screening for major resistance gene mediated pathogen recognition throughout the whole species showed clear geographical differences between populations and complete loss of pathogen recognition in the south of the species range. In addition, we observed high complexity in a homologues of Cladosporium resistance (Hcr) locus, underlying the recognition of C. fulvum, in central and northern populations. Our findings show that major gene mediated recognition specificity is diverse in a natural plant-pathosystem. We place major gene resistance in a geographical context that also defined the evolutionary history of that species. Data suggest that the underlying loci are more complex than previously anticipated, with small-scale gene recombination being possibly responsible for maintaining balanced polymorphisms in the populations that experience pathogen pressure.</p>
AI results complementing the Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Denmark
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2019, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Austria
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2019, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
Repeatable differences in exploratory behaviour predict tick infestation probability in wild great tits
Abstract Ecological factors and individual-specific traits affect parasite infestation in wild animals. Ixodid ticks are important ectoparasites of various vertebrate hosts, which include passerine bird species such as the great tit (Parus major). We studied various key ecological variables (breeding density, human disturbance) and phenotypic traits (exploratory behaviour, body condition) proposed to predict tick infestation probability and burden in great tits. Our study spanned 3 years and 12 nest box plots located in southern Germany. Breeding, adult great tits were assessed for exploration behaviour, body condition, and tick burden. Plots were open to human recreation; human disturbance was quantified in each plot as a recreation pressure index from biweekly nest box inspections. Infested individuals were repeatable in tick burden across years. These repeatable among-individual differences in tick burden were not attributable to exploration behaviour. However, faster explorers did have a higher infestation probability. Furthermore, body condition was negatively correlated to tick burden. Recreation pressure was correlated to increased infestation probability, although this relationship was just above the threshold of statistical significance. Our study implies that avian infestation probability and tick burden are each determined by distinct phenotypic traits and ecological factors. Our findings highlight the importance of animal behaviour and human disturbance in understanding variation in tick burden among avian hosts. Significance statement Various abiotic and biotic factors, including personality type, influence tick parasitism in birds, but exactly how all these factors interplay remains unclear. We studied a wild population of great tits over a 3-year period and assessed birds for their exploration behaviour and tick infestation. We found that more explorative great tits were more likely to be infested with ticks. By contrast, faster explorers did not have higher tick burdens. Tick burden was nevertheless moderately repeatable among individuals. Our results imply that animal personality influences the probability of parasite infestation, and that infestation likelihood versus intensity are determined by distinct mechanisms. Our work highlights the importance of animal behaviour to understand parasite infestation in wild populations.
Conspicuous animal signals avoid the cost of predation by being intermittent or novel: confirmation in the wild using hundreds of robotic prey
<p>Social animals are expected to face a trade-off between producing a signal that is detectible by mates and rivals, but not obvious to predators. This trade-off is fundamental for understanding the design of many animal sig- nals, and is often the lens through which the evolution of alternative communication strategies is viewed. We have a reasonable working knowl- edge of how conspecifics detect signals under different conditions, but how predators exploit conspicuous communication of prey is complex and hard to predict. We quantified predation on 1566 robotic lizard prey that per- formed a conspicuous visual display, possessed a conspicuous ornament or remained cryptic. Attacks by free-ranging predators were consistent across two contrasting ecosystems and showed robotic prey that performed a conspicuous display were equally likely to be attacked as those that remained cryptic. Furthermore, predators avoided attacking robotic prey with a fixed, highly visible ornament that was novel at both locations. These data show that it is prey familiarity—not conspicuousness—that determine predation risk. These findings replicated across different preda- tor–prey communities not only reveal how conspicuous signals might evolve in high predation environments, but could help resolve the paradox of aposematism and why some exotic species avoid predation when invad- ing new areas.</p>
Data from: Wild bees as winners and losers: relative impacts of landscape composition, quality, and climate
<p>Wild bees, like many other taxa, are threatened by land use and climate change, which in turn jeopardizes pollination of crops and wild plants. Understanding how land-use and climate factors interact is critical to predicting and managing pollinator populations and ensuring adequate pollination services, but most studies have evaluated either land-use or climate effects, not both. Further, bee species are incredibly variable, spanning an array of behavioral, physiological and life history traits that can increase or decrease resilience to land use or climate change. Thus, there are likely bee species that benefit, while others suffer, from changing climate and land use, but few studies have documented taxon-specific trends. To address these critical knowledge gaps, we analyzed a long-term dataset of wild bee occurrences from Maryland, Delaware, and Washington DC, USA, examining how different bee genera and functional groups respond to landscape composition, quality, and climate factors.</p> <p>Despite a large body of literature documenting land-use effects on wild bees, in this study, climate factors emerged as the main drivers of wild-bee abundance and richness. For wild-bee communities in spring and summer/fall, temperature and precipitation were more important predictors than landscape composition, landscape quality, or topography. However, relationships varied substantially between wild-bee genera and functional groups.</p> <p>In the Northeast USA, past trends and future predictions show a changing climate with warmer winters, more intense precipitation in winter and spring, and longer growing seasons with higher maximum temperatures. In almost all of our analyses, these conditions were associated with lower abundance of wild bees. Wild-bee richness results were more mixed, including neutral and positive relationships with predicted temperature and precipitation patterns. Thus, in this region and undoubtedly more broadly, changing climate poses a significant threat to wild-bee communities.</p>
Prospects for the natural distribution of crop wild-relatives with limited adaptability: The case of the wild pea Pisum fulvum
<p>Plant breeders and conservationists depend on knowledge about the genetic variation of their species of interest. <em>Pisum</em> <em>fulvum</em>, a wild relative of domesticated pea, has attracted attention as a genetic resource for crop improvement, yet little information about its diversity in the wild has been published hitherto. We sampled 15 populations of <em>P. fulvum </em>from Israeli natural habitats and conducted genotyping by sequencing to analyse their genetic diversity and adaptive state. We also attempted to evaluate the species past demography and the prospects of its future reaction to environmental changes. The results suggest that genetic diversity of <em>P. fulvum</em> is low to medium and is distributed between well diverged populations. Surprisingly, with 56 % in the total population, the selfing rate was found to be significantly lower than expected from a species that is commonly assumed to be a predominant selfer. We found a strong genetic bottleneck during the last glacial period and only limited patterns of isolation by distance and environment, which explained 13 % - 18 % of the genetic variation. Despite the weak signatures of genome-wide IBE, 1354 markers were significantly correlated with environmental factors, 1233 of which were located within known genes with a nonsynonymous to synonymous ratio of 0.382. Species distribution modelling depicted an ongoing fragmentation and decreased habitable area over the next 80 years under two different socio-economic pathways. Our results suggest that complex interactions of substantial drift and selection shaped the genome of <em>P. fulvum</em>. Climate change is likely to cause further erosion of genetic diversity in <em>P. fulvum</em>. Systematic ex-situ conservation may be advisable to safeguard genetic variability for future utilization of this species.</p>
Variation of chemical compounds in wild Heliconiini reveals ecological and historical contributions to the evolution of chemical defences in mimetic butterflies
<p>Evolutionary convergence of colour pattern in mimetic species is tightly linked with the evolution of chemical defences. Yet, the evolutionary forces involved in natural variations of chemical defences in aposematic species are still understudied. Herein, we focus on the evolution chemical defences in the butterfly tribe Heliconiini. These neo-tropical butterflies contain large concentrations of cyanogenic glucosides, cyanide-releasing compounds acting as predator deterrent. These compounds are either <i>de novo </i>synthesized or sequestered from their <i>Passiflora</i> host-plant, so that their concentrations may depend on host-plant specialization and host-plant availability. We sampled 375 wild Heliconiini butterflies across Central and South America, covering 43% species of this clade, and quantify individual variations in the different cyanogenic glucosides using liquid chromatography coupled with tandem mass spectrometry. We detected new compounds and important variations in chemical defences both within and among species. Based on the most recent and well-studied phylogeny of Heliconiini, we show that ecological factors such as mimetic interactions and host-plant specialization have a significant association with chemical profiles, but these effects are largely explained by phylogenetic relationships. Our results therefore suggest that shared ancestries largely contribute to chemical defence variation, pointing out at the interaction between historical and ecological factors in the evolution of Müllerian mimicry.</p>
Wild Dictyostelium discoideum social amoebae show plastic responses to the presence of nonrelatives during multicellular development
<p>When multiple strains of microbes form social groups, such as the multicellular fruiting bodies of <em>Dictyostelium discoideum</em>, conflict can arise regarding cell fate. Both fixed and plastic differences among strains can contribute to cell fate, and plastic responses may be particularly important if social environments frequently change. We used RNA-sequencing and photographic time series analysis to detect possible conflict-induced plastic differences between wild <em>D. discoideum </em>aggregates formed by single strains compared to mixed pairs of strains (chimeras). We found one hundred and two differentially expressed genes that were enriched for biological processes including cytoskeleton organization and cyclic-AMP response (up-regulated in chimeras), and DNA replication and cell cycle (down-regulated in chimeras). In addition, our data indicate that in reference to a time series of multicellular development in the lab strain AX4, chimeras may be slightly behind clonal aggregates in their development. Finally, phenotypic analysis supported slower splitting of aggregates and a nonsignificant trend for larger group sizes in chimeras. The transcriptomic comparison and phenotypic analyses support discoordination among aggregate group members due to social conflict. These results are consistent with previously observed factors that affect cell fate decision in <em>D. discoideum </em>and provide evidence for plasticity in cAMP signaling and phenotypic coordination during development in response to social conflict in <em>D. discoideum </em>and similar microbial social groups.</p>
Red and white clover provide food resources for honeybees and wild bees in urban environments
<p>Pollination is a key ecological process both in wild plant species and in economically important crops. Global land use change and urbanization are known to alter plant-pollinator interactions, but our understanding of how the local (i.e. size of green area, food resource availability) and landscape (surrounding green area) context affect pollinators in urban landscapes remains understudied. We selected two co-occurring clover species, Trifolium pratense and T. repens. to assess whether mixed stands of common wildflowers provide resources for a diverse pollinator assemblage by supporting differently adapted/specialized pollinator species. We further wanted to test how environmental factors (flower diversity, resource availability, size and percentage of green area) alter plant-pollinator interactions in urban environments. We studied the pollinator assemblage and visitation rate of pollinators in 1 m² plots in 21 green areas of different sizes in the city of Vienna (Austria). In addition, we assessed the surrounding landscape context by estimating the percentage of green area in perimeters of 100 m, 500 m and 1000 m around each study plot and measured local flower resource availability. We found that proportions of pollinator taxa differed significantly between white and red clover, with T. repens mainly pollinated by Apis mellifera, and T. pratense primarily pollinated by different bumblebee species. Visitation frequency was positively correlated to local resource availability (number of anthetic Trifolium inflorescences in each plot), but independent of the surrounding landscape context (i.e. percentage of green area). We conclude that the establishment and maintenance even of small patches of different common wildflowers help maintain a diverse bee community in urban environments. Particularly large-flowered species may be important for supporting long-tongued, late emerging pollinators such as certain bumblebee species.</p>
Revelation of genetic diversity and structure of wild Elymus excelsus (Poaceae: Triticeae) collection from western China by SSR markers
<p>Hosting unique and important plant germplasms, the Qinghai-Tibet Plateau (QTP), as the third pole of the world, and Xinjiang, located in the centre of the Eurasian continent, are major distribution areas of perennial Triticeae grasses, especially the widespread <i>Elymus</i> species. <i>Elymus excelsus</i> Turcz. ex Griseb, a perennial forage grass with strong tolerance to environmental stresses, such as drought, cold and soil impoverishment, can be appropriately used for grassland establishment due to its high seed production. To provide basic information for collection, breeding strategies and utilization of <i>E. excelsus</i> germplasm, microsatellite markers (SSR) were employed in the present study to determine the genetic variation and population structure of 25 wild accessions of <i>E. excelsus</i> from Xinjiang (XJC) and the QTP, including Sichuan (SCC) and Gansu (GSC) of western China. Based on the 159 polymorphic bands amplified by 35 primer pairs developed from three related species, the average values of the polymorphic information content (PIC), marker index (MI), resolving power (Rp), Nei's genetic diversity (H) and Shannon's diversity index (I) of each pair of primers were 0.289, 1.348, 1.897, 0.301 and 0.459, respectively, validating that these SSR markers can also be used for the evaluation of genetic diversity of <i>E. excelsus</i> germplasms, and demonstrating the superior versatility of EST-SSR vs. G-SSR. We found a relatively moderate differentiation (<i>F</i><sub><i>st</i></sub> = 0.151) among the XJC, SCC and GSC geo-groups, and it is worth noting that, the intra-group genetic diversity of the SCC group (<i>H</i><sub><i>e</i></sub> = 0.197) was greater than that of the GSC (<i>H</i><sub><i>e</i></sub> = 0.176) and XJC (<i>H</i><sub><i>e</i></sub> = 0.148) groups. Both the Unweighted Pair Group Method with Arithmetic (UPGMA) clustering and principal coordinates analysis (PCoA) divided the 25 accessions into three groups, whereas the Bayesian STRUCTURE analysis suggested that <i>E. excelsus</i> accessions fell into four main clusters. Besides, this study suggested that geographical distance and environmental variables (annual mean precipitation and average precipitation in growing seasons), especially for QTP accessions, should be combined to explain the population genetic differentiation among the divergent geographical regions. These data provided comprehensive information about these valuable <i>E. excelsus</i> germplasm resources for the protection and collection of germplasms and for breeding strategies in areas of Xinjiang and QTP in western China.</p>
Data from: Wild acorn woodpeckers recognize associations between individuals in other groups
According to the social intelligence hypothesis, understanding the cognitive demands of the social environment is key to understanding the evolution of intelligence. Many important socio-cognitive abilities, however, have primarily been studied in a narrow subset of the social environment—within-group social interactions—despite the fact that between-group social interactions often have a substantial effect on fitness. In particular, triadic awareness (knowledge about the relationships and associations between others) is critical for navigating many types of complex social interactions, yet no existing study has investigated whether wild animals can track associations between members of other social groups. We investigated inter-group triadic awareness in wild acorn woodpeckers (Melanerpes formicivorus), a socially complex group-living bird. We presented woodpeckers with socially incongruous playbacks that simulated two outsiders from different groups calling together, and socially congruous playbacks that simulated two outsiders from the same group calling together. Subjects responded more quickly to the incongruous playbacks, suggesting that they were aware that the callers belonged to two different groups. This study provides the first demonstration that animals can recognize associations between members of other groups under natural circumstances, and highlights the importance of considering how inter-group social selection pressures may influence the evolution of cognition.
Data from: Genetic wealth, population health: major histocompatibility complex variation in captive and wild ring-tailed lemurs (Lemur catta)
Across species, diversity at the major histocompatibility complex (MHC) is critical to individual disease resistance and, hence, to population health; however, MHC diversity can be reduced in small, fragmented, or isolated populations. Given the need for comparative studies of functional genetic diversity, we investigated whether MHC diversity differs between populations which are open, that is experiencing gene flow, versus populations which are closed, that is isolated from other populations. Using the endangered ring-tailed lemur (Lemur catta) as a model, we compared two populations under long-term study: a relatively "open," wild population (n = 180) derived from Bezà Mahafaly Special Reserve, Madagascar (2003–2013) and a "closed," captive population (n = 121) derived from the Duke Lemur Center (DLC, 1980–2013) and from the Indianapolis and Cincinnati Zoos (2012). For all animals, we assessed MHC-DRB diversity and, across populations, we compared the number of unique MHC-DRB alleles and their distributions. Wild individuals possessed more MHC-DRB alleles than did captive individuals, and overall, the wild population had more unique MHC-DRB alleles that were more evenly distributed than did the captive population. Despite management efforts to maintain or increase genetic diversity in the DLC population, MHC diversity remained static from 1980 to 2010. Since 2010, however, captive-breeding efforts resulted in the MHC diversity of offspring increasing to a level commensurate with that found in wild individuals. Therefore, loss of genetic diversity in lemurs, owing to small founder populations or reduced gene flow, can be mitigated by managed breeding efforts. Quantifying MHC diversity within individuals and between populations is the necessary first step to identifying potential improvements to captive management and conservation plans.
Data from: Limited hatchery introgression into wild brook trout (Salvelinus fontinalis) populations despite reoccurring stocking
Due to increased anthropogenic pressures on many fish populations, supplementing wild populations with captive-raised individuals has become an increasingly common management practice. Stocking programs can be controversial due to uncertainty about the long-term fitness effects of genetic introgression on wild populations. In particular, introgression between hatchery and wild individuals can cause declines in wild population fitness, resiliency, and adaptive potential, and contribute to local population extirpation. However, low survival and fitness of captive-raised individuals can minimize the long-term genetic consequences of stocking in wild populations, and to date the prevalence of introgression in actively stocked ecosystems has not been rigorously evaluated. We quantified the extent of introgression in 30 populations of wild brook trout (Salvelinus fontinalis) in a Pennsylvania watershed, and examined the correlation between introgression and 11 environmental covariates. Genetic assignment tests were used to determine the origin (wild vs. captive-raised) for 1742 wild-caught and 300 hatchery brook trout. To avoid assignment biases, individuals were assigned to two simulated populations that represented the average allele frequencies in wild and hatchery groups. Fish with intermediate probabilities of wild ancestry were classified as introgressed, with threshold values determined through simulation. Even with reoccurring stocking at most sites, over 93% of wild-caught individuals probabilistically assigned to wild origin, and only 6% of wild-caught fish assigned to introgressed. Models examining environmental drivers of introgression explained less than 3% of the among-population variability, and all estimated effects were highly uncertain. This was not surprising given overall low introgression observed in this study. Our results suggest that introgression of hatchery-derived genotypes can occur at low rates, even in actively stocked ecosystems and across a range of habitats. However, a cautious approach to stocking may still be warranted, as the potential effects of stocking on wild population fitness and the mechanisms limiting introgression are not known.
Data from: Assessing the relationship between illegal hunting of ungulates, wild prey occurrence and livestock depredation rate by large carnivores
1. Illegal hunting of ungulates can reduce the prey base of carnivores, which can increase human-carnivore conflict (HCC) through livestock depredation. However, the relationship between ungulate poaching, wild prey abundance and livestock depredation has rarely been empirically studied. 2. We surveyed 18 sites across the Hyrcanian forest in northern Iran; a global biodiversity hotspot under pressure of illegal hunting of ungulates, prey depletion, livestock grazing and HCC. We conducted three field surveys across 1204 km in 93 4×4 km cells to count signs of ungulate poaching as well as encounters with livestock and prey species of the Persian leopard Panthera pardus saxicolor and the grey wolf Canis lupus. We documented sheep/goat and cattle depredation from interviews with 201 herders and analysed the effects of illegal hunting of ungulates, forest cover, IUCN categories of reserves, elevation, distance to villages, and wild prey and livestock encounter rates on carnivore depredation rates using generalized linear models. 3. Illegal hunting of ungulates was the most influential depredation predictor. An increase in the illegal hunting of ungulates by one sign/km significantly increased depredation by up to four times. We also found significantly lower levels of ungulate poaching in national parks (IUCN category II) compared to protected areas (V), wildlife refuges (IV) and no-hunting areas, though poaching signs were frequently found in most cells (58%). Encounters with livestock was inversely linked to wild prey species, but positively coupled with signs of ungulate poaching. 4. Synthesis and applications. Our study reveals that: (i) an increase in the intensity of illegal hunting of ungulates can intensify livestock depredation by carnivores; (ii) future efforts in reducing human-carnivore conflict (HCC) to acceptable levels require a combination of law enforcement, prey recovery approaches and mitigation measures; (iii) there is an urgent need to better understand the root causes of poaching of ungulates to help minimize HCC.
Domestic and wild native herbivores combined are still overgrazing Patagonia rangelands: A response to Marino et al. (2019)
<p>1. Oliva et al. (2019) based upon primary productivity estimates concluded that, after long periods of overgrazing, Patagonia´s domestic stocks adjusted to regional-scale herbivore carrying capacity at the end of last century. Guanaco populations, a native camelid, increased thereafter driving combined grazing pressures once again over carrying capacity in some areas.</p> <p>2. Marino, Rodriguez and Schroeder (2019) argued that domestic grazing is not really at equilibrium because domestic stocks are concentrated in areas that remain overgrazed. They support the idea that guanacos auto-regulate their density by resource-defence territoriality and are weak competitors with domestic herbivores, occupying marginal areas. In their view Oliva et al. (2019) put guanacos in the role of scapegoats, leaving domestic stocks unchecked. </p> <p>3. Equilibrium at regional scale does not preclude over and under-grazing at smaller (local) scales. By separating areas with and without domestic stocks Marino et al. (2019) estimated 28% and 73% overgrazing in the provinces of Chubut and Santa Cruz, respectively. We recalculated these estimates and found overgrazing of 28% and 47% for Chubut and Santa Cruz, respectively. But when combined with guanaco densities overgrazing increases to 48 and 108% for Chubut and Santa Cruz, respectively.</p> <p>4. We question the hypothesised lack of competitive value and effective self-regulating mechanisms in guanacos. A data set of 13 sheep farms show densities of 12-61 (mean 27) guanacos.km-2 with a combined grazing pressure above carrying capacity. Populations in a protected area in Chubut reached 42 guanacos.km-2, crashed during drought with 60% mortality, and increased thereafter to 70 guanacos.km-2, but even at peak numbers recruitment population rates remained extremely high. </p> <p>5. Synthesis and applications. Marino et al 2019 are right to question the apparent equilibrium of domestic stocks with carrying capacity, as they are concentrated in part of the territory that may be still overgrazed. But ground assessments show that guanaco populations can reach densities well over carrying capacity with or without sheep. This only stresses our conclusion that joint management of the native-domestic herbivore system is urgently needed. Farm management plans may transform an apparent competitor into a valuable natural complementary resource to sheep raising</p>
Data from: Adaptive maternal investment in the wild? Links between maternal growth trajectory and offspring size, growth, and survival in contrasting environments
Life history theory predicts that investment per offspring should correlate negatively with the quality of environment offspring are anticipated to encounter; parents may use their own experience as juveniles to predict this environment and may modulate offspring traits such as growth capacity as well as initial size. We manipulated nutrient levels in the juvenile habitat of wild Atlantic salmon Salmo salar to investigate the hypothesis that the egg size maximizing juvenile growth and survival depends on environmental quality. We also tested whether offspring traits were related to parental growth trajectory. Mothers that grew fast when young produced more, smaller offspring than mothers that had grown slowly to reach the same size. Despite their size disadvantage, offspring of faster-growing mothers grew faster than those of slow-growing mothers in all environments, counter to the expectation that they would be competitively disadvantaged. However, they had lower relative survival in environments where the density of older predatory/competitor fish was relatively high. These links between maternal (but not paternal) growth trajectory and offspring survival rate were independent of egg size, underscoring that mothers may be adjusting egg traits other than size to suit the anticipated environment faced by their offspring.
Data from: Estimation of energetic condition in wild baboons using fecal thyroid hormone determination
Understanding how environmental and social factors affect reproduction through variation in energetic condition remains understudied in wild animals, in large part because accurately and repeatedly measuring energetic condition in the wild is a challenge. Thyroid hormones (THs), such as triiodothyronine (T3) and thyroxine (T4), have a key role in mitigating metabolic responses to energy intake and expenditure, and therefore are considered important biomarkers of an animal's energetic condition. Recent method development has shown that T3 and T4 metabolites can be measured in feces, but studies measuring THs in wild populations remain rare. Here we measured fecal T3 metabolites (mT3) in baboons, and tested whether the conditions of collection and storage used for steroid hormones could also be used for mT3; we focused on mT3 as it is the biologically active form of TH and because fecal T4 metabolites (mT4) were below detection levels in our samples. We also tested if mT3 could be determined in freeze-dried samples stored for long periods of time, and if these concentrations reflected expected biological variations across seasons and reproductive states. Our results show that mT3 can be measured with accuracy and precision in baboon feces. The conditions of collection and storage we use for steroid hormones are appropriate for mT3 determination. In addition, mT3 concentrations can be determined in samples stored at -20 °C for up to 9 years, and are not predicted by the amount of time in storage. As expected, wild female baboons have lower mT3 concentrations during the dry season. Interestingly, mT3 concentrations are lower in pregnant and lactating females, possibly reflecting an energy sparing mechanism. Retroactive determination of mT3 concentration in stored, freeze-dried feces opens the door to novel studies on the role of energetic condition on fitness in wild animals.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.