Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
8,537
datasets available to search
ShareScore release 0.9.0
Dataset results
8,537 results for “Openness”
RiboReport - Benchmarking ribosome profiling based identification of open reading frames in bacteria.
GEO Series GSE131514. Escherichia coli str. K-12 substr. MG1655. 3 samples. Type: Expression profiling by high throughput sequencing.
Identification of open chromatin regions in three different tissues of Oikopleura dioica
GEO Series GSE155772. Oikopleura dioica. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The Clinical and Molecular Rersponse of Pyoderma Gangrenosum to Interleukin 23 Blockade: results from a proof-of-concept open-label clinical trial
GEO Series GSE271627. Homo sapiens. 28 samples. Type: Expression profiling by array.
Nynrin preserves hematopoietic stem cell function by inhibiting the mitochondrial permeability transition pore opening (ChIP_Seq)
GEO Series GSE248635. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Dual DNA/protein tagging of open chromatin unveils dynamics of epigenomic landscapes in leukemia
GEO Series GSE158350. Homo sapiens. 29 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Meiosis timecourse open chromatin dynamics as measured by FAIRE
GEO Series GSE75258. Saccharomyces cerevisiae; Saccharomyces cerevisiae SK1. 12 samples. Type: Genome binding/occupancy profiling by array.
Open Chomatin Analysis of human pluripotent stem cell cell-derived FLK1+ vascular mesoderm cells in AATS versus AATSI basal medium
GEO Series GSE152463. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A pioneer factor locally opens compacted chromatin to enable targeted ATP-dependent nucleosome remodeling
GEO Series GSE216065. Mus musculus. 26 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
COCA-seq: genome-wide mapping of O-GlcNAc-associated open chromatin
GEO Series GSE294152. Homo sapiens. 4 samples. Type: Other.
Dual DNA/protein tagging of open chromatin unveils dynamics of epigenomic landscapes in leukemia (ATAC-Seq)
GEO Series GSE158346. Homo sapiens. 23 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Effect of INO80 loss on open chromatin in HepG2 cells [ATAC-seq]
GEO Series GSE97410. Homo sapiens. 9 samples. Type: Other.
Open Pediatric Cancer (OpenPedCan) Project v15
OpenPedCan is a project led by the Center for Data-Driven Discovery at the Children's Hospital of Philadelphia. Here, we harmonize pan-cancer data using KidsFirst Data Resource Center workflows and harness OpenPBTA analytics workflows to scale and add modules across pediatric cancer datasets. The v11 release of this data has been integrated into the pediatric open targets platform to assist in development and query of the FDA's Relevant Pediatric Molecular Targets List (PMTL) to identify new therapeutics for children with cancer. This is the v15 release of OpenPedCan. This dataset only includes cases under the age of 40 years old.
MOIED: Magi Open Information Extraction Dataset
<p><strong>Description</strong></p> <p>Magi Open Information Extraction Dataset (MOIED) is a Chinese Open IE dataset containing 7,618,181 records extracted from plain text across 3,319,763 webpages in various domains. Each record in the dataset consists of the (subject, predicate, object) tuple, the associated confidence score, and the context information. The dataset comprises 1,427,742 distinct facts of 272,522 entities and 117,731 predicates.</p> <p>A notable property of MOIED is that each distinct fact has multiple records with URLs referring to mentions in diverse contexts, which enables multiple-instance learning (MIL) and other correlative approaches.</p> <p>As a paragraph level Open IE dataset, at least 45.1% of the records in MOIED can only be extracted through synthesizing information from multiple sentences.</p> <p>Magi is an extraction engine that continuously learns from the Internet, which combines cross-referencing, timeline analysis, and other heuristics to mitigate the inevitable false positives in the extractions. All records in MOIED were randomly sampled from a database dump of <a href="https://magi.com/">magi.com</a> in January 2020. To provide more reliable evaluation results, human annotators examined the dataset and selected 19,161 verified records for the dev and test sets.</p> <p> </p> <p><strong>Disclaimers</strong></p> <ol> <li>The dataset is expected to be used in weakly supervised scenarios since the records in the training set are not human-annotated and could be imprecise or erroneous.</li> <li>Records are not guaranteed to be universally correct. The correctness of extractions should be evaluated based on contexts (specified by the URLs).</li> <li>The extraction was made at a certain time Magi visits the URL, thus it is not guaranteed that the URL is still accessible, or the content is unmodified since the extraction was conducted.</li> <li>Due to legal and regulatory issues, the webpage URLs are mostly ones accessible from Mainland China, yet, the content of certain webpages, as well as the extraction results, could be in violation of law and regulation of certain countries or regions in certain ways.</li> </ol>
Dataset from "What do developers talk about open source software licensing? " - SEAA2020
<p>This is the dataset used in the respective research work. The abstract is available below.</p> <p>If you want to cite this work, please use:</p> <p> </p> <p>Georgia M. Kapitsaki, Maria Papoutsoglou, Daniel German and Lefteris Angelis, What do developers talk about open source software licensing?, to appear in the Proceedings of the Euromicro Conference on <a href="https://dsd-seaa2020.um.si/seaa/index.html">Software Engineering and Advanced Applications</a>, SEAA 2020.</p> <p>Free and open source software has gained a lot of momentum in the industry and the research community. Open source<br> licenses determine the rules, under which the open source software can be further used and distributed. Previous works<br> have examined the usage of open source licenses in the framework of specific projects or online social coding platforms, examining developers specific licensing views for specific software. However, the questions practitioners ask about licenses and licensing as captured in Question and Answer websites also constitute an important aspect toward understanding practitioners general licenses and licensing concerns. In this paper, we investigate open source license discussions using data from the Software Engineering, Open Source and Law Stack Exchange sites that contain relevant data. We describe the process used for the data collection and analysis, and discuss the main results. Our results indicate that clarifications about specific licenses and specific license terms are required. The results can be useful for developers, educators and license authors.</p>
Data set from the article Settembrini AM, Mazzaccaro D, Modafferi A, Righini P, Malacrida G, Nano G. Carotid artery stenting in the elderly. Are there differences between open and closed cell stents? Ann Ital Chir. 2019;90:106-110. PMID: 31182697.
<p>data set from the article Settembrini AM, Mazzaccaro D, Modafferi A, Righini P, Malacrida G, Nano G. Carotid artery stenting in the elderly. Are there differences between open and closed cell stents? Ann Ital Chir. 2019;90:106-110. PMID: 31182697.</p> <p>This is the abstract</p> <p><strong>Introduction: </strong>We reviewed our experience of carotid artery stenting (CAS) in patients older than 75 years treated with open or closed cell stents. The aim of our paper is to evaluate if there are differences between the two groups in term of clinical outcomes, neurological impairment and survival.</p> <p><strong>Material and methods: </strong>CAS consecutively performed from March 2000 and December 2016 in elderly patients were rectrospectively collected. We classified them into two groups: closed cells (group A) and open cells stent (group B). Perioperative and long term events were observed (death, major cerebrovascular and cardiovascular events, in-stent restenosis).</p> <p><strong>Results: </strong>We collected 429 CAS, 259 (60.37%) male with median age of 79 years (range 77-82). Group A collects 247 (57.98%) patients, 142 (33.3%) in group B. The other 40 patients were treated with hybrid stents or just ballooning. In perioperative period we had not death but 2 patients (0.8%) in group A had a transient ischemic attack (TIA) due to immediate stent thrombosis, 2 patients (1 per group) had an ipsilateral major stroke and 8 patients had a TIA (3 in group A and 5 in group B). Median follow up was 686 days (IQR 267-1299 days). Freedom from complications at 12, 36 and 60 months was 99.4 ± 0.5%, 97 ± 1.5% and 90.08 ± 4.3% respectively. Survival at 12, 36 and 60 months was 77.4 ± 7.5%, 51.6 ± 8.9% and 16.1± 6.6% respectively.</p> <p><strong>Conclusion: </strong>Our data show CAS as a safe procedure also for people older than 75 years in terms of perioperative and long term complications and cerebral events without any significant difference between the different type of stent. Further studies are requested to better clarify its role in symptomatic patients.</p>
Data set from Dellafiore F, Caruso R, Arrigoni C, Flocco SF, Giamberti A, Chessa M. Lifestyles and determinants of perceived health in Italian grown-up/adult congenital heart patients: a cross-sectional and pan-national survey. BMJ Open. 2019 Oct 18;9(10):e030917. doi: 10.1136/bmjopen-2019-030917. PMID: 31630105; PMCID: PMC6803081.
<p>Data set from Dellafiore F, Caruso R, Arrigoni C, Flocco SF, Giamberti A, Chessa M. Lifestyles and determinants of perceived health in Italian grown-up/adult congenital heart patients: a cross-sectional and pan-national survey. BMJ Open. 2019 Oct 18;9(10):e030917. doi: 10.1136/bmjopen-2019-030917. PMID: 31630105; PMCID: PMC6803081.</p> <p> </p> <p>This is the abstract:</p> <p><strong>Objectives: </strong>To provide the first epidemiological lifestyle descriptions of the Italian grown-up/adult congenital heart disease (GUCH/ACHD) population by identifying the determinants of poor perceived health status.</p> <p><strong>Design: </strong>Cross-sectional pan-national survey.</p> <p><strong>Setting: </strong>Italian GUCH/ACHD patients who were members of the Italian Association of GUCH/ACHD.</p> <p><strong>Primary and secondary outcome measures: </strong>To discuss these lifestyle descriptions through an ad hoc developed questionnaire and health perceptions (ie, mental and physical health perception) through a short form health survey (SF-12).</p> <p><strong>Results: </strong>629 patients included; many investigated GUCH/ACHD lifestyles were determined similar to those of the general population - with the exception of the smoking habits, which were lower. The odds of the occurrence of inadequate physical health perceptions increased by more than two times in patients undergoing antiarrhythmic therapies (OR adjusted=2.045; 95% CI=1.201 to 3.479; p=0.008; n=629), more than 1.5 times in patients taking oral anticoagulants (OR adjusted=1.638; 95% CI=1.038 to 2.585; p=0.034; n=629) and roughly 1.7 times in patients treated with antiplatelets (OR adjusted=1.743; 95% CI=1.024 to 2.966; p=0.041; n=629). The odds of the occurrence of inadequate mental health perceptions increased by 1.7% for every year that the patients aged (OR adjusted=1.017; 95% CI=1.002 to 1.032; p=0.025; n=629).</p> <p><strong>Conclusion: </strong>Particular attention should be paid to these ageing patients' increasing psychological needs, and additional research is needed to identify associations between their lifestyles and clinical outcomes.</p> <p> </p>
SCAD-zbMATH-01 Open Access Data Set for Author Name Disambiguation (AND)
<p> </p> <p><strong>Note: This data set is <em>deprecated</em>. Please use the enhanced, open access version available at https://doi.org/10.5281/zenodo.161333</strong><strong> !</strong></p> <p> </p> <p>This data set contains disambiguated publication data from zbMATH (www.zbmath.org) for use in author name disambiguation (AND). </p> <p>It covers 28321 publications with 33810 authorship records, authored by 2946 distinct authors. Authorship records have been manually annotated with author identifiers. </p> <p>For details, see "Data Sets for Author Name Disambiguation: An Empirical Analysis and a New Resource", Mark-Christoph Müller, Florian Reitz, and Nicolas Roy, 2016, submitted to Scientometrics.</p>
outdated open source data
<p>These are the <span>outdated </span>open-source data. Pls wait.</p>
Data associated with "RxTrends: An R Shiny Application for Visualising Open Data on Prescribed Medications in Ireland"
Open the record for dataset details and reuse information.
Open Data sets from Cold Climate Wind Farms in Finland, Pori
<p>This dataset includes 6 years of meteorological mast data and operational data from one turbine located in Pori, Western Finland. Dataset also includes simultaneous and longer-term monthly icing time series from WIceAtlas database for reference. Site can be described as an easy site both in terms of icing (IEA Ice Class 2) and terrain complexity. </p> <p>The work was funded by an EU IRPWIND project.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.