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In-depth characterization revealed polymer type and chemical content specific effects of microplastic on Dreissena bugensis
<p>The files contain datasets that were generated during laboratory-based real-time valvometry, and laser doppler anemometry measurements. The article was published in Journal of Hazardous Materials (accepted June 8, 2022).</p>
Core bibliometric Covid19 and comparable research dataset and code for the study "From intent to impact: Investigating the effects of open sharing commitments"
<p>This document provides the underlying dataset for the bibliometric component for the 2022 study "From intent to impact: Investigating the effects of open sharing commitments" by Research Consulting and Science-Metrix.</p> <p>Before reproducing the study findings or re-using the underlying datasets for other purposes, please cautiously review their limitations in the study's technical annex and main report, available at: https://zenodo.org/communities/data-sharing-in-public-health-emergencies/ </p> <p>Particularly, note that there is an error rate in attribution of signatory status to journal publications and preprints; in their location within specific thematic disease-based areas; or computing of dimension such as identification of data availability statement sections; identification of data depisition mentions within data availability statement sections; or matching of preprints and journal publications.</p> <p>These error rates are expected and have been estimated, please consult the technical report for full details.</p> <p> </p> <p>Definition of data fields is provided is the table below:</p> <table> <tbody> <tr> <td>Column name </td> <td>Definition</td> </tr> <tr> <td>document_type</td> <td>preprint or journal publication</td> </tr> <tr> <td>doi</td> <td>digital object identifier</td> </tr> <tr> <td>arxiv_id</td> <td>arXiv preprint server's unique identifier for its preprints</td> </tr> <tr> <td>ssrn_id</td> <td>SSRN preprint server's unique identifier for its preprints. Note that some of these IDs are contained within the DOIs also assigned to some (but not all) SSRN preprints , in the form of "10.2139/ssrn." + 'ssrn_id'</td> </tr> <tr> <td>coalesce_id</td> <td>coalesce function applied to the DOI, arxiv_id and ssrn_id. Redundant for journal publications.</td> </tr> <tr> <td>preprint_server</td> <td>Preprint platform on which a preprint has been published, restricted to arXiv, bioRxiv, medRxiv and SSRN for this study.</td> </tr> <tr> <td>journal_title</td> <td>Publishing journal name in the case of a journal publication.</td> </tr> <tr> <td>year</td> <td>The set is restricted to 2020 and 2021 for Covid19 preprints and journal publications. HVRD journal publications restricted to 2018-2019. HVRD preprints were restricted to 2020-2021 instead, to compensate for the lac of year-normalization for preprints, and generally better control findings against the launch of medRxiv in 2019.</td> </tr> <tr> <td>publication_title</td> <td>Title of the individual journal publication or preprint, not that of the publishing journal or preprint server.</td> </tr> <tr> <td>authors</td> <td>First 100 researchers that appear as authors of a preprint or journal publication. These are not parsed and provided for qualitative validation or assessments rather than for further quantitative treatment.</td> </tr> <tr> <td>Covid19</td> <td>Journal publications or preprints are coded 1 if they has been identified as falling into this thematic area through our queries (see the technical annex), 0 otherwise</td> </tr> <tr> <td>HVRD</td> <td>Human viral respiratory disease, the thematic area considered to be the closest to Covid19. Journal publications or preprints are coded 1 if they has been identified as falling into this thematic area through our queries (see the technical annex), 0 otherwise</td> </tr> <tr> <td>Journal_sig</td> <td>Journal publications where the publishing journal and/or its publishing house are Joint Statement signatories. Coded as 1 if they are signatories, 0 if not signatory, null if status could not be determined due to insufficient metadata. Not that all preprint servers included in this study are Joint Statement signatories. This category was fully removed from the models for preprints, rather than all preprints being assigned automatic signatory status.</td> </tr> <tr> <td>RPO_sig</td> <td>Journal publications and preprints where at least one author is affiliated with at least one research performing organization that is a Joint Statement signatory. Coded as 1 ifor signatory, 0 if not signatory, null if status could not be determined due to insufficient metadata.</td> </tr> <tr> <td>Funder_sig</td> <td>Journal publications and preprints where at least one funder supporting the research is a Joint Statement signatory. Coded as 1 ifor signatory, 0 if not signatory, null if status could not be determined due to insufficient metadata. Although funding is attributed to researchers rather than publications, funding metadata is more readily available at the second level. This approach also captures the flexible usage of financial resources that researchers may make accross mulitple concurrently ongoing research projects.</td> </tr> <tr> <td>overton_norm</td> <td>Year and subfield-normalized binary score of whether the journal publications has been cited by one or more policy-related documents from the Overton database. Null scores for journal publications not covered by the database.</td> </tr> <tr> <td>overton</td> <td>Normalizations being unable for preprints, binary score of whether the preprint has been cited by one or more policy-ralated documents from the Overton database. Null scores for preprints not covered by the database.</td> </tr> <tr> <td>daswriting_binary</td> <td>Binary score capturing identification of a data availability statement in the journal publication or preprint using the queries presented in the technical annex. Null scores are for publications and preprints where records of full texts were unavailable for text mining, or were this analysis could not be performed due to licensing restrictions. </td> </tr> <tr> <td>deposition_binary</td> <td>Binary score capturing identification of a data availability statement and data deposition mention therein in the journal publication or preprint using the queries presented in the technical annex. Null scores are for publications and preprints where records of full texts were unavailable for text mining, or were this analysis could not be performed due to licensing restrictions. </td> </tr> <tr> <td>is_oa</td> <td>Binary score capturing OA or free-to-read (also so-calleod "bronze OA" and "green OA") status of journal publications. Unpaywall categories have been used in a mutually exclusive implementation, with the best (gold > hybrid>bronze>green) possible applicable category being retained. Null scores for journal publications not covered in our Unpaywall dataset. Scores of 0 denote journal publications not available under an OA or free-to-read category.</td> </tr> <tr> <td>is_gold</td> <td>as above</td> </tr> <tr> <td>is_hybrid</td> <td>as above</td> </tr> <tr> <td>is_bronze</td> <td>as above</td> </tr> <tr> <td>is_green</td> <td>as above</td> </tr> <tr> <td>matched_journal_binary</td> <td>For preprints, whether one or more matching journal publications could be identified using the queries identified in the technical, or preprint servers' own lists of preprint-journal publication matches. Null scores for preprints with insufficient metadata information to perform the matching operation.</td> </tr> <tr> <td>matched_journal_doi</td> <td>For those preprints with or more matching journal publications, the DOI(s) of the matching journal publication(s). Note that some of the maching journal publications identified do not have DOIs.</td> </tr> <tr> <td>matched_preprint_binary</td> <td>For journal publications, whether one or more matching preceding preprints could be identified using the queries identified in the technical annex, or preprint servers' own lists of preprint-journal publication matches. Null scores for journal publications without sufficient metadata to run the analysis.</td> </tr> <tr> <td>matched_preprint_id</td> <td>For those journal publications preceded with one or more arXiv, bioRxiv, medRxiv or SSRN preprints, the DOI(s), arXiv ID and/or SSRN ID of the matching preprint(s). </td> </tr> <tr> <td>hasdoi</td> <td>Only journal publications with DOIs were retained in the core quantitative analyses.</td> </tr> <tr> <td>hasacknowledgements</td> <td>Only journal publications with funding acknowledgements (to determine funding-based signatory status) were retained in the core quantitative analyses.</td> </tr> <tr> <td>funder_array</td> <td>Array (but cast as string) of names of the funders on the basis of whose idenitification signatory status has been attributed, where relevant. Null if non-signatory or unknown signatory status.</td> </tr> <tr> <td>RPO_array</td> <td>Array (but cast as string) of names of the research performing organizations on the basis of whose idenitification signatory status has been attributed, where relevant. Null if non-signatory or unknown signatory status.</td> </tr> <tr> <td>DAS_excerpt</td> <td>Journal publication or preprint text excerpt on which succesful identifcation of data availability statements and/or data deposition mentions have been made. Null both where the query could not be run at all, or where the query was negative.</td> </tr> <tr> <td>big5</td> <td>Journal publication published in a journal owned by one of the following five publishing houses: Elsevier, Sage, Springer Nature, Taylor-Francis, Wiley.</td> </tr> <tr> <td>LMIC</td> <td>Journal publication whose authors include at least one researcher affiliated with at least one institution located in a lower-middle income country as defined by the World Bank</td> </tr> <tr> <td>LIC</td> <td>Journal publication whose authors include at least one researcher affiliated with at least one institution located in a low income country as defined by the World Bank</td> </tr> <tr> <td>SouthNorth</td> <td>Journal publication whose authors include at least one researcher affiliated with at least one institution located in a upper-middle income country, a lower-middle income country, or a low income country as defined by the World Bank; as well as at least one researcher affiliated with at least one institution located in a high income country. For the purpose of this indicator, Sicnece-Metrix exceptionally includes China and Bulgaria in the list of high income countries.</td> </tr> <tr> <td>DID_allauthors_OR</td> <td>Journal publication is included in the difference-in-difference model defining signatory publication as EITHER holding journal-based signatory status OR funding-based signatory status, and where no filter has been applied to control for author-level biases.</td> </tr> <tr> <td>DID_authorcontrol_OR</td> <td>Journal publication is included in the difference-in-difference model defining signatory publication as EITHER holding journal-based signatory status OR funding-based signatory status, and where a filter has been applied to control for author-level biases.</td> </tr> <tr> <td>DID_authorcontrol_AND</td> <td>Journal publication is included in the difference-in-difference model defining signatory publication as holding journal-based signatory status AND funding-based signatory status, and where a filter has been applied to control for author-level biases.</td> </tr> <tr> <td>DID_allauthors_AND</td> <td>Journal publication is included in the difference-in-difference model defining signatory publication as holding journal-based signatory status AND funding-based signatory status, and where no filter has been applied to control for author-level biases.</td> </tr> <tr> <td>Preprint_authorcontrol</td> <td>Preprint is included in the the analytical breakdowns where a filter has been applied to control for author-level biases. Note that authors have been kept constant in preprints on the basis of their belonging to all analytical breakdowns in journal publications rather than in preprint-based groups.</td> </tr> </tbody> </table> <p> </p>
Effects of severe anthropogenic disturbance on the heart rate and body temperature in free-living greylag geese (Anser anser)
<p>Anthropogenic disturbances are a major concern for the welfare and conservation of wildlife. We recorded heart rate and body temperature of 20 free-living greylag geese in response to a major regularly re-occurring anthropogenic disturbance, New Year’s Eve fireworks. Heart rate and body temperature were significantly higher in the first and second hour of the new year, compared to the same hour on the 31<sup>st</sup> of December, the average during December and the average during January. Heart rate and body temperature was not significantly affected by sex or age. From 0200-0300 onwards, 1<sup>st</sup> of January heart rates did not significantly differ from the other periods, however body temperatures were significantly increased until 0300-0400. From 0400-0500, heart rate was not affected by any of the investigated factors, whereas body temperature was significantly increased on the 1<sup>st</sup> of January compared 31<sup>st</sup> of December and the December average but not compared to the January average. To conclude, our results show that New Year’s Eve fireworks cause a substantial physiological response, indicative of a stress response in greylag geese, which is costly in terms of energy expenditure.</p>
Effects of developmental and adult environments on ageing
<p>Developmental and adult environments can interact in complex ways to influence the fitness of individuals. Most studies investigating effects of the environment on fitness focus on environments experienced and traits expressed at a single point in an organism's life. However, environments vary with time, so the effects of the environments that organisms experience at different ages may interact to affect how traits change throughout life. Here we test whether thermal stress experienced during development leads individuals to cope better with thermal stress as adults. We manipulated temperature during both development and adulthood and measured a range of life-history traits, including senescence, in male and female seed beetles (Callosobruchus maculatus). We found that thermal stress during development reduced adult reproductive performance of females. In contrast, lifespan and age-dependent mortality were affected more by adult than developmental environments, with high adult temperatures decreasing longevity and increasing age-dependent mortality. Aside from an interaction between developmental and adult environments to affect age-dependent changes in male weight, we did not find any evidence of a beneficial acclimation response to developmental thermal stress. Overall, our results show that effects of developmental and adult environments can be both sex- and trait- specific, and that a full understanding of how environments interact to affect fitness and ageing requires the integrated study of conditions experienced during different stages of ontogeny.</p>
Effect of sediment suspensions on seawater conductivity measurements
<p>Data are in small files recorded in April 2015 and March 2016 during experiments made in Shom's metrology laboratory. A 2 liter cylindrical container, immersed in a calibration bath, was filed with seawaters of practical salinities 35 or 38, and stabilized in temperature at 10 °C to better than 1 mK. 10 °C was choosen to avoid seawater evaporation during measurements. Measurements were made with a calibrated CTD recorder SBE 37 placed in the cylindrical container and a reference temperature probe SBE 35 placed in the calibration bath. Sand or sediments were added progressively in the container and mixed with a stirring propeller. After each increase in sand concentration, a file was recorded. Measurements were made at concentrations: 0, 50, 100, 200, 300, 500, 700, 900, 1100, 2000, 3000 and 5000 mg/l.<br> The sand comes from Plouneour-Trez beach in Brittany, France, 48° 39′ North, 4° 19′ West. The sediments come from muds taken in the Abers Benoit (Treglonou) and Le Faou bays (France) located respectively at 48° 33′ North, 4° 32′ West and 48° 17′ 36″ North, 4° 10′ 39″ West.</p>
Reanalysis accounting for clustering and nesting overturns conclusions in: "Watching TV Cooking Programs: Effects on Actual Food Intake Among Children"
<p>Stata code to reproduce results from Folkvord F, Anschütz D, Geurts M. Watching TV cooking programs: effects on actual food intake among children. <em>J Nutr Educ Behav</em>. 2020;52(1):3-9.</p>
How to quantify factors degrading DNA in the environment and predict degradation for effective sampling design
<p>Extra-organismal DNA (eoDNA) from material left behind by organisms (non-invasive DNA: e.g., faeces, hair) or from environmental samples (eDNA: e.g., water, soil) is a valuable source of genetic information. However, the relatively low quality and quantity of eoDNA, which can be further degraded by environmental factors, results in reduced amplification and sequencing success. This is often compensated for through cost- and time-intensive replications of genotyping/sequencing procedures. Therefore, system- and site-specific quantifications of environmental degradation are needed to maximize sampling efficiency (e.g., fewer replicates, shorter sampling durations), and to improve species detection and abundance estimates. Using ten environmentally diverse bat roosts as a case study, we developed a robust modelling pipeline to quantify the environmental factors degrading eoDNA, predict eoDNA quality, and estimate sampling-site-specific ideal exposure duration. Maximum humidity was the strongest eoDNA-degrading factor, followed by exposure duration and then maximum temperature. We also found a positive effect when hottest days occurred later. The strength of this effect fell between the strength of the effects of exposure duration and maximum temperature. With those predictors and information on sampling period (before or after offspring were born), we reliably predicted mean eoDNA quality per sampling visit at new sites with a mean squared error of 0.0349. Site-specific simulations revealed that reducing exposure duration to 2-8 days could substantially improve eoDNA quality for future sampling. Our pipeline identified high humidity and temperature as strong drivers of eoDNA degradation even in the absence of rain and direct sunlight. Furthermore, we outline the pipeline's utility for other systems and study goals, such as estimating sample age, improving eDNA-based species detection, and increasing the accuracy of abundance estimates.</p>
Modelling assumptions and input dataset for the case study of the paper "Societal Effects of Large-Scale Energy Storage in the Current and Future Day-Ahead Market: A Belgian Case Study"
<p>This data package includes the modelling assumptions and input data to replicate the results of the case study included in the paper "Societal Effects of Large-Scale Energy Storage in the Current and Future Day-Ahead Market: A Belgian Case Study". This paper is part of the 18th International Conference on the European Energy Market (EEM22).</p> <p>The case study models the Belgian day-ahead electricity market, in which the existing storage is considered, in addition to large-scale battery energy storage systems of different sizes for varying renewable energy shares. A detailed description of the case study is provided in the readme file. </p> <p>This supplementary data package includes the following files: </p> <p> --Belgium Model Input Data.xlsx: Dataset used as input in the case study of the mentioned paper<br> --Modelling Assumptions.pdf: Modelling assumptions considered in the case study<br> --readme.txt (this file): Includes a detailed description of the data package</p> <p> </p> <p>The data included in this dataset was collected from public open sources [1]-[2]. Please notice that this dataset does not replace the original open access information. For accessing the data, please visit the following websites:</p> <p>[1] “ENTSO-E Transparency Platform.” [Online]. Available: https://transparency.entsoe.eu/dashboard/show. [Accessed: 06-Jul-2022].<br> [2] “Grid data.” [Online]. Available: https://www.elia.be/en/grid-data. [Accessed: 06-Jul-2022].</p> <p><br> </p> <p> </p>
The effect of co-location on human communication networks
<p>Representative dataset for "The effect of co-location on human communication networks." The files are serialized python objects pickled using python 3.8. dist_dict_* contains data on the pairwise distance between researchers, while undir_semiactive_* contains networks representing daily email counts between researchers.</p>
Data and R code for long-term study of fire and climate effects on water quality in Clear Lake, California
<p>Long-term relationships between water quality, fire and climate for Clear Lake, California. Although the watershed has historically experienced frequent fire, the 2018 Mendocino Complex, which was the largest wildfire complex in state history, burned approximately 40% of the watershed, sparking concerns about drinking water quality and lake ecosystem health. This analysis spans approximately 1968-2021.</p>
Data from: Integrating effects of neighbor interactions for pollination
<p>Animal-pollinated plants interact with neighbors for both abiotic resources and pollination, with consequences for reproduction and yield. Yet few studies have compared the relative magnitude of these effects, particularly in agroecosystems. In vertically stratified communities, such as agroforests, neighbor effects may be stratum-dependent. Understanding the net effects of neighbors on crop yield is important for managing multifunctional agroecosystems to simultaneously support production and biodiversity. This study evaluated the effects of neighboring plants on pollen deposition, fertilization, and yield in Coffea arabica in a shaded organic coffee farm with high non-crop plant abundance and diversity in Chiapas, Mexico. We assessed the impact of 1) floral resources at three vertical strata (herbs, coffee bushes, and canopy trees) on stigma pollen load (a measure of interaction for pollination), and 2) floral density and canopy cover (proxies for competition for abiotic resources) on yield (final fruit set and per-fruit weight), using structural equation modeling to evaluate the relative effect of each interaction type. Coffee competed for pollination with neighbors (conspecifics and heterospecifics) across strata. Pollen load influenced final fruit set, but the effect of neighbor competition for pollination was weaker than effects mediated by interaction for abiotic resources. Effects of interactions for abiotic resources were heterogeneous across strata, with negligible effects of herb-layer or coffee flower density but net positive effects of canopy trees on final fruit set. Overall effects of neighbors on coffee yield were weak, suggesting that coffee agroecosystems can be managed to maintain high plant density and diversity without sacrificing yield.</p>
Data for empirical example in: An effect size for comparing the strength of morphological integration across studies
<p>Understanding how and why phenotypic traits covary is a major interest in evolutionary biology. Biologists have long sought to characterize the extent of morphological integration in organisms, but comparing levels of integration for a set of traits across taxa has been hampered by the lack of a reliable summary measure and testing procedure. Here we propose a standardized effect size for this purpose, calculated from the relative eigenvalue variance, Vrel. First we evaluate several eigenvalue dispersion indices under various conditions, and show that only Vrel remains stable across samples size and the number of variables. We then demonstrate that Vrel accurately characterizes input patterns of covariation, so long as redundant dimensions are excluded from the calculations. However, we also show that the variance of the sampling distribution of Vrel depends on input levels of trait covariation, making Vrel unsuitable for direct comparisons. As a solution, we propose transforming Vrel to a standardized effect size (Z-score) for representing the magnitude of integration for a set of traits. We also propose a two-sample test for comparing the strength of integration between taxa, and show that this test displays appropriate statistical properties. We provide software for implementing the procedure, and an empirical example illustrates its use.</p>
Decomposing niche components reveals simultaneous effects of opposite deterministic processes structuring alpine small mammal assembly
<p><span>Our knowledge of community assembly dynamics under multiple stressors is limited because of opposite niche-based processes, i.e., limiting similarity and habitat filtering could simultaneously occur, masking the overall patterns. Alpine biomes provide the ideal systems to explore the influences of co-occurrence processes as these communities usually face multiple stresses such as resources limitation and habitat constraints. However, the assembly processes of mammals in alpine areas have hardly been exclusively studied. Here, we</span> <span>aimed to address how different processes structured small mammal communities at the tree line transition zone, which represents one of the most distinct vegetation boundaries separating alpine from montane habitats. We compiled a regional dataset including species list, phylogeny, and functional traits from field collections across 18 mountains of southwest China and complemented them with published data sources. The traits were decomposed into different niche components to determine the respective effects of specific stressors. Phylogenetic and functional diversity indices representing evolutionary history, trait space, and pairwise species distance were calculated and compared with null expectations. Linear mixed-effect models were constructed to assess the increasing or decreasing tendencies of diversity values against increasing elevation. The results showed that phylogenetic and functional richness were strongly correlated with species richness, unlike the distance-based indices which were uncorrelated with species richness. There was no evidence found to support non-random phylogenetic or overall trait patterns. However, the resource acquisition niche tended to be more overdispersed (positive slopes), while the habitat affinity niche tended to be more clustered (negative slopes) as habitats became less productive and less vegetated. We conclude that limiting similarity and habitat filtering simultaneously structure small mammal communities in alpine areas. Altogether, the present study provides vital insights into the complexity of co-occurring assembly processes by niche decomposition, and highlights the importance of considering different diversity dimensions when assessing community structure.</span></p>
The effect of pseudofrazil particle entrainment on salinity measurements: Data
<p>This experiment was designed to investigate the effect of entraining frazil ice particles found in supercooled ocean water by mimicking their effect through plastic particles of similar material properties as ice. <br> This was done in order to better control the volume concentration of the particles and avoid damage to sensors by icing which is common in supercooled water.<br> In total six experiments were run in which non-spherical round polyamide-12 seeding particles made by Dantec Dynamics A/S with a mean diameter of 50 micro meters were added to natural saltwater tinged with surfactant whilst recording temperature and conductivity with Sea-Bird Electronics sensors. <br> Surfactant was Ecostore-brand eucalyptus laundry liquid (ingredients can be found here: https://ecostore.com/au/eucalyptus-laundry-liquid-409/, last accessed July 2022).<br> Experiments are H1, H2 and HC performed with saltwater taken from Otago Harbour, Dunedin, New Zealand and M1, M2 and MC performed with saltwater taken from the Munida Transect offshore of Otago Peninsula, Dunedin, New Zealand.<br> HC and MC were run in a walk-in freezer with water temperatures around -1 degrees C, all other experiments were performed at ambient room temperatures.<br> The setup consisted of a 30 litre bucket containing 24 litres of seawater filtered to 1 micro meter. Surfactant was added to the water to aid particle dispersion. <br> Subsequently particles were added in increments to a total mass of particles in the bucket of 100 g.<br> Temperature was recorded with a SBE3plus temperature sensor and conductivity with a SBE4C sensor. <br> These were connected to a SBE pump with standard SBE CT ducting. <br> Data were recorded with a SBE31 deck unit connected to a laptop computer.<br> Data were recorded continuously, times at which particles were added or other operations performed are given in the tables <experimentname>info.xlsx<br> Raw data were converted using the sensors' calibration coefficients and corrected for CT offset and cell thermal mass using the SBE data processing software and standard values for sensors configured as in the SBE911+ setup, which is equivalent to the ducting used by us.<br> A manuscript with results from these experiments is available as Richter, M. E., et al., 2023, The Effect of Pseudofrazil Particle Entrainment on Salinity Measurements, Earth and Space Science, doi:10.1029/2022EA002564</p> <p>. </p>
data for "Plant genetic effects on microbial hubs impact host fitness in repeated field trials"
<p>These are data tables required for the analysis of the paper "Plant genetic effects on microbial hubs impact host fitness in repeated field trials". <br> All scripts are available at https://forgemia.inra.fr/bbrachi/microbiota_paper.git</p> <p>The folder architecture in the zip files is the same as in the repository: https://forgemia.inra.fr/bbrachi/microbiota_paper.git</p> <p>The dataset includes: </p> <p>- OTU count tables for 16S and ITS</p> <p>- taxonomic assignation</p> <p>- plant seed-set estimates</p> <p>- plant growth data from the B38 experiment. </p> <p>- Metabolomics datasets</p>
Effects of pair migratory behaviour on breeding phenology and success in a partially migratory shorebird population
<p>In migratory systems, variation in individual phenology can arise through differences in individual migratory behaviours, and this may be particularly apparent in partial migrant systems, where migrant and resident individuals are present within the same population. Links between breeding phenology and migratory behaviour or success are generally investigated at the individual level. However, for breeding phenology in particular, the migratory behaviours of each member of the pair may need to be considered simultaneously, as breeding phenology will likely be constrained by timing of the pair member that arrives last, and carry-over effects on breeding success may vary depending on whether pair members share the same migratory behaviour or not. We used tracking of marked individuals and monitoring of breeding success from a partially migrant population of Eurasian oystercatchers (Haematopus ostralegus) breeding in Iceland to test whether (a) breeding phenology varied with pair migratory behaviour; (b) within-pair consistency in timing of laying differed among pair migratory behaviours; and (c) reproductive performance varied with pair migratory behaviour, timing of laying and year. We found that annual variation in timing of laying differed among pair migratory behaviours, with resident pairs being more consistent than migrant and mixed pairs, and migrant/mixed pairs breeding earlier than residents in most years but later in one (unusually cold) year. Pairs that laid early were more likely to replace their clutch after nest loss, had higher productivity and higher fledging success, independent of pair migratory behaviour. Our study suggests that the links between individual migratory behaviour and reproductive success can vary over time and, to a much lesser extent, with mate migratory behaviour and can be mediated by differences in laying dates. Understanding these cascading effects of pair phenology on breeding success is likely to be key to predicting the impact of changing environmental conditions on migratory species.</p>
Microclimate simulation output: "Between vision and action: the predicted effects of co-designed green infrastructure solutions on environmental burdens"
<p>The following microclimate simulation dataset supports the paper "Between vision and action: the predicted effects of co-designed green infrastructure solutions on environmental burdens" by Mathias Schaefer, published in Urban Ecosystems (2022).</p> <p>"T0Simulation_11082020_output" contains data about the status quo simulation of the area of interest (500 m x 500 m x 60 m), whereas "T1Simulation_11082020_output" shows the results of the Green Infrastructure scenario described in the research article above. Please ensure enough memory space on your device, as both files have a size of approximately 25 GB (unzipped).</p> <p>The output files can be visualized with the ENVI-met Leonardo extension. The ENVI-met LITE-version is freely available and can be downloaded at the <a href="https://envi-met.info/doku.php?id=files:download">ENVI-met homepage</a>. Alternatively, the included .NETCDF files can be imported as a multidimensional raster dataset in ArcGIS Pro.</p> <p>Files in the folder "atmosphere" represent meteorological parameters such as potential air temperature [°C], relative humidity [%], or wind speed [m/s]. Air pollution calculations like particulate matter concentrations [µg/m³] can be found in the folder "pollutants". The folder "buildings" contains building data for 3D visualizations of surface temperatures [°C].</p>
Dataset for Effect of matrix solidification on the structure formation in electromagnetic suspensions
<p><strong>Introduction:</strong> Dataset from numerical simulations describing the structure formation in suspensions with electromagnetically active particles in an external field, as described in detail in the paper</p> <ul> <li>Konstantinos Manikas, Markus Hütter, Patrick D. Anderson: Effect of matrix solidification on the structure formation in electromagnetic suspensions. Appl. Phys. A, 128: 709 (11 pages), 2022. DOI: 10.1007/s00339-022-05844-y WWW: https://doi.org/10.1007/s00339-022-05844-y</li> </ul> <p>which should be cited whenever this dataset is used. The data compiled here is the basis for figures 4, 5, and 6 in that paper.</p> <p> </p> <p><strong>Format:</strong> The files are provided in plain-text format (ascii).</p> <p> </p> <p><strong>Filenames:</strong> The nomenclature for the filenames follows the following scheme:</p> <ul> <li>data_fig{number}_{param}_{value}.txt</li> </ul> <p>where {number} specifies the number of the figure in the paper, {param} is the parameter that is studied and {value} denotes its numerical value (see the paper for details).</p> <p> </p> <p><strong>File content:</strong> Each datafile contains 1 header line, in which the meaning of the data-columns are explained (time, S2, N*, lambda* -- see paper for details), and the studied parameter and its value are listed. After this header line, the data is presented in tab-delimited columns.</p> <p> </p> <p>For further details, the reader is referred to the paper mentioned above.</p>
Data from: Controlled drainage and subirrigation suitability in the United States: A meta-analysis of crop yield and soil moisture effects
<p>Controlled drainage and subirrigation (CDSI) is an important water management strategy in many regions, but the conditions under which CDSI is most likely to increase crop yield and soil moisture are not fully understood. A meta-analysis, consisting of 154 pairwise observations from replicated and randomized trials in 30 peer-reviewed primary research articles on CDSI (6 controlled drainage, 24 CDSI, analyzed together due to data scarcity), was conducted to study the responses of yield and soil moisture to CDSI, and investigate how crop type, soil texture, and cumulative growing season precipitation (PGS) influence these responses. Based on the yield response to these moderating factors, we used a fuzzy-logic approach to map potentially suitable locations for CDSI in the conterminous United States. On average, CDSI increased yield by 8.0% (95% CI = 1.8–14.7%) compared with conventional free drainage. The yield response to CDSI did not differ among crops. However, a greater yield response to CDSI was observed in medium-textured soils (19.4% increase; 95% CI = 12.4–27.0%) than in coarse- or fine-textured soils. The positive effect of CDSI on yield increased with decreasing PGS in coarse- and medium-textured soils. There was no clear effect of CDSI on soil moisture, nor did any moderators influence this relationship, though this may be attributed to the scarcity of studies on CDSI reporting soil moisture. The fuzzy-logic-based approach revealed that while potentially suitable areas are mostly concentrated in the well studied U. S. Midwest, these areas also exist in other regions where CDSI may warrant further study.</p>
Dataset Effect Forest Wuestebach Tereno Wavelet
<p>Dataset of the effect of deforestation on DOC and Nitrate for Wuestebach stream (Tereno) - wavelet analysis</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.