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3,630 results for “Forming”
Data from: Tropical arboreal ants form dominance hierarchies over nesting resources
Interspecific dominance hierarchies have been widely reported across animal systems. High-ranking species are expected to monopolize more resources than low-ranking species via resource monopolization. In some ant species, dominance hierarchies have been used to explain species coexistence and community structure. However, it remains unclear whether or in what contexts dominance hierarchies occur in tropical ant communities. This study seeks to examine whether arboreal twig-nesting ants competing for nesting resources in a Mexican coffee agricultural ecosystem are arranged in a linear dominance hierarchy. We described the dominance relationships among 10 species of ants and measured the uncertainty and steepness of the inferred dominance hierarchy. We also assessed the orderliness of the hierarchy by considering species interactions at the network level. Based on the randomized Elo-rating method, we found that the twig-nesting ant species Myrmelachista mexicana ranked highest in the ranking, while Pseudomyrmex ejectus was ranked as the lowest in the hierarchy. Our results show that the hierarchy was intermediate in its steepness, suggesting that the probability of higher ranked species winning contests against lower ranked species was fairly high. Motif analysis and significant excess of triads further revealed that the species networks were largely transitive. This study highlights that some tropical arboreal ant communities organize into dominance hierarchies.
Analysis code and quantification for publication "The stress-sensing domain of activated IRE1α forms helical filaments in narrow ER membrane tubes"
<p>Analysis code and input/output files for all quantifications performed for publication entitled "The stress-sensing domain of activated IRE1α forms helical filaments in narrow ER membrane tubes." </p> <p>All questions on the analyses or code can be directed to han@walterlab.ucsf.edu</p>
Hydraulic prediction of drought-induced plant dieback and top-kill depends on leaf habit and growth form
<p>Hydraulic failure caused by severe drought contributes to aboveground dieback and whole-plant death. The extent to which dieback or whole-plant death can be predicted by plant hydraulic traits has rarely been tested among species with different leaf habits and/or growth forms. We investigated 19 hydraulic traits in 40 woody species in a tropical savanna and their potential correlations with drought response during an extreme drought event during the El Niño–Southern Oscillation in 2015. Plant hydraulic trait variation was partitioned substantially by leaf habit but not growth form along a trade-off axis between traits that support drought tolerance versus avoidance. Semi-deciduous species and shrubs had the highest branch dieback and top-kill (complete aboveground death) among the leaf habits or growth forms. Dieback and top-kill were well explained by combining hydraulic traits with leaf habit and growth form, suggesting integrating life history traits with hydraulic traits will yield better predictions.</p>
Updated restraint dictionaries for carbohydrates in the pyranose form
<p>Reproducibility data for the paper entitled "Updated restraint dictionaries for carbohydrates in the pyranose form".</p> <ul> <li>New carbohydrate restraint dictionaries for use in crystallographic software.</li> <li>Output data from testing them by refining a set of glycoprotein structures with REFMAC5.</li> </ul>
Data and Results for: Cost-effective, high-throughput fruit phenotyping system for three-dimensional reconstruction of fruit form
<p>The dataset contains the raw data used for generating the results in the paper, and the reconstructed results at 1mm and 2mm voxel resolution.</p> <p><strong>Raw data</strong>: Samples are gathered into groups of five, DataObjects1-5.zip, ... , DataObjects56-59.zip.</p> <p>Once uncompressed, each directory holds the images and configuration information used for each sample. For instance, '1_obj' is for the first sample, and the 'data' folder has the image files by camera. In this case one camera was used, 'cam2', and there are 62 images. 'pattern_square_mm_external.txt', 'pattern_square_mm_internal.txt', and 'rotate_specification_file.txt' are all configuration files needed for the calibration step.</p> <p> </p> <p><strong>Results</strong>: Reconstructions results are in compressed folders 'reconstruction-results-1mm.zip' and 'reconstruction-results-2mm.zip' for 1 mm and 2 mm voxel resolutions, respectively. These results are three-dimensional model files than can be viewed with a variety of software, we have used the free MeshLab: https://www.meshlab.net/ .</p> <p> </p> <p> </p> <p> </p>
Dominant plant species in different growth form categories in various ecosystem types
<p>The table contains a list of vegetation parameter values of dominant plant species in different growth form categories in various ecosystem types based on their importance value indices (IVI) (max. IVI for tree and pole category = 300; max. IVI for sapling and seedling category = 200) in Bantimurung Bulusaraung National Park (BBNP) and Hasanuddin University Educational Forest (HUEF), South Sulawesi.</p>
Dominant plant species in different growth form categories in various ecosystem types
<p>The table contains a list of vegetation parameter values of dominant plant species in different growth form categories in various ecosystem types based on their importance value indices (IVI) (max. IVI for tree and pole category = 300; max. IVI for sapling and seedling category = 200) in Bantimurung Bulusaraung National Park (BBNP) and Hasanuddin University Educational Forest (HUEF), South Sulawesi.</p>
PUDL Raw FERC Form 6
<p>The Federal Energy Regulatory Commission (FERC) Form 6 is a comprehensive financial and operating report submitted for oil pipelines rate regulation and financial audits. Archived from <a href="https://www.ferc.gov/industries-data/electric/general-information/electric-industry-forms/form-66-q-overview-orders">https://www.ferc.gov/industries-data/electric/general-information/electric-industry-forms/form-66-q-overview-orders</a></p> <p>This archive contains raw input data for the Public Utility Data Liberation (PUDL) software developed by <a href="https://catalyst.coop">Catalyst Cooperative</a>. It is organized into <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Packages</a>. For additional information about this data and PUDL, see the following resources:</p> <ul> <li><a href="https://github.com/catalyst-cooperative/pudl">The PUDL Repository on GitHub</a></li> <li><a href="https://catalystcoop-pudl.readthedocs.io">PUDL Documentation</a></li> <li><a href="https://zenodo.org/communities/catalyst-cooperative/">Other Catalyst Cooperative data archives</a></li> </ul> <p> </p>
PUDL Raw EIA Form 191 -- Monthly Underground Natural Gas Storage Report
<p>The EIA Form 191, also known as the Monthly Underground Natural Gas Storage Report, describes the working and base gas in reservoirs, injections, withdrawals, and location of reservoirs by field monthly. Archived from <a href="https://www.eia.gov/naturalgas/ngqs/">https://www.eia.gov/naturalgas/ngqs/</a></p> <p>This archive contains raw input data for the Public Utility Data Liberation (PUDL) software developed by <a href="https://catalyst.coop">Catalyst Cooperative</a>. It is organized into <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Packages</a>. For additional information about this data and PUDL, see the following resources: </p><ul> <li><a href="https://github.com/catalyst-cooperative/pudl">The PUDL Repository on GitHub</a></li> <li><a href="https://catalystcoop-pudl.readthedocs.io">PUDL Documentation</a></li> <li><a href="https://zenodo.org/communities/catalyst-cooperative/">Other Catalyst Cooperative data archives</a></li> </ul> <p></p>
PUDL Raw FERC Form 60
<p>The Federal Energy Regulatory Commission (FERC) Form 60 is a comprehensive financial and operating report submitted for centralized service companies. Archived from <a href="https://www.ferc.gov/ferc-online/ferc-online/filing-forms/service-companies-filing-forms/form-60-annual-report">https://www.ferc.gov/ferc-online/ferc-online/filing-forms/service-companies-filing-forms/form-60-annual-report</a></p> <p>This archive contains raw input data for the Public Utility Data Liberation (PUDL) software developed by <a href="https://catalyst.coop">Catalyst Cooperative</a>. It is organized into <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Packages</a>. For additional information about this data and PUDL, see the following resources:</p> <ul> <li><a href="https://github.com/catalyst-cooperative/pudl">The PUDL Repository on GitHub</a></li> <li><a href="https://catalystcoop-pudl.readthedocs.io">PUDL Documentation</a></li> <li><a href="https://zenodo.org/communities/catalyst-cooperative/">Other Catalyst Cooperative data archives</a></li> </ul> <p> </p>
PUDL Raw FERC Form 2
<p>Raw Federal Energy Regulatory Commission (FERC) Form 2 data, archived from <a href="https://www.ferc.gov/industries-data/natural-gas/industry-forms/form-2-2a-3-q-gas-historical-vfp-data">https://www.ferc.gov/industries-data/natural-gas/industry-forms/form-2-2a-3-q-gas-historical-vfp-data</a></p> <p>This archive contains raw input data for the Public Utility Data Liberation (PUDL) software developed by <a href="https://catalyst.coop">Catalyst Cooperative</a>. It is organized into <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Packages</a>. For additional information about this data and PUDL, see the following resources:</p> <ul> <li><a href="https://github.com/catalyst-cooperative/pudl">The PUDL Repository on GitHub</a></li> <li><a href="https://readthedocs.org/projects/catalystcoop-pudl/">PUDL Documentation</a></li> <li><a href="https://zenodo.org/communities/catalyst-cooperative/">Other Catalyst Cooperative data archives</a></li> </ul> <p> </p>
PUDL Raw EIA Form 861
<p>Raw US Energy Information Administration (EIA) Form 861 Data, archived from <a href="https://www.eia.gov/electricity/data/eia861/">https://www.eia.gov/electricity/data/eia861/</a></p> <p>This archive contains raw input data for the Public Utility Data Liberation (PUDL) software developed by <a href="https://catalyst.coop">Catalyst Cooperative</a>. It is organized into <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Packages</a>. For additional information about this data and PUDL, see the following resources:</p> <ul> <li><a href="https://github.com/catalyst-cooperative/pudl">The PUDL Repository on GitHub</a></li> <li><a href="https://readthedocs.org/projects/catalystcoop-pudl/">PUDL Documentation</a></li> <li><a href="https://zenodo.org/communities/catalyst-cooperative/">Other Catalyst Cooperative data archives</a></li> </ul> <p> </p>
PUDL Raw EIA Form 860M
<p>Raw US Energy Information Administration (EIA) Form 860M data, archived from <a href="https://www.eia.gov/electricity/data/eia860m/">https://www.eia.gov/electricity/data/eia860m/</a></p> <p>This archive contains raw input data for the Public Utility Data Liberation (PUDL) software developed by <a href="https://catalyst.coop">Catalyst Cooperative</a>. It is organized into <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Packages</a>. For additional information about this data and PUDL, see the following resources:</p> <ul> <li><a href="https://github.com/catalyst-cooperative/pudl">The PUDL Repository on GitHub</a></li> <li><a href="https://readthedocs.org/projects/catalystcoop-pudl/">PUDL Documentation</a></li> <li><a href="https://zenodo.org/communities/catalyst-cooperative/">Other Catalyst Cooperative data archives</a></li> </ul> <p> </p>
PUDL Raw EIA Form 923 -- Power Plant Operations Report
<p>The EIA Form 923 collects detailed monthly and annual electric power data on electricity generation, fuel consumption, fossil fuel stocks, and receipts at the power plant and prime mover level. Archived from <a href="https://www.eia.gov/electricity/data/eia923">https://www.eia.gov/electricity/data/eia923</a></p> <p>This archive contains raw input data for the Public Utility Data Liberation (PUDL) software developed by <a href="https://catalyst.coop">Catalyst Cooperative</a>. It is organized into <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Packages</a>. For additional information about this data and PUDL, see the following resources: </p><ul> <li><a href="https://github.com/catalyst-cooperative/pudl">The PUDL Repository on GitHub</a></li> <li><a href="https://catalystcoop-pudl.readthedocs.io">PUDL Documentation</a></li> <li><a href="https://zenodo.org/communities/catalyst-cooperative/">Other Catalyst Cooperative data archives</a></li> </ul> <p></p>
Reducing pesticides without organic certification? Potentials and limits of an intermediate form of agricultural production
<p><span>A growing number of farmer cooperatives cultivate crops without chemical pesticides, but also without organic certification. How does this intermediate form of agriculture between conventional and organic production function? What are the outcomes of this production form on cropland biodiversity? How does this model contribute to the transition toward more sustainable forms of agriculture? We address these research questions using original data collected in the AgroBioDiv project from the farmers' cooperative "KraichgauKorn" based in the German State of Baden-Württemberg. This cooperative is a collection of conventional farmers, who refrain from pesticide use during cultivation periods for KraichgauKorn grains, with products being produced without pesticide inputs in the growing season. Our study finds higher levels of weed species biodiversity on KGK cereal fields compared to conventional fields, but lower than organic fields. In addition, more endangered wild species monitored by the State of Baden-Württemberg were found on KGK fields than on conventional fields, with organic fields exhibiting the highest presence of endangered flora. We conclude that such kinds of enterprises may indeed contribute substantially to a successful transformation toward sustainable agricultural systems. </span></p>
PROCRAFT_Form A_Fiat CR32_Milan
<p>Information on Italian aircraft Fiat CR 32 - crashed in Italy (Kept in Volandia, Milan)</p>
PROCRAFT_Form A_IMAM RO37_Kabul
<p>Information on Italian aircraft IMAM RO 37 crashed in 1936 near Kabul (Afghanistan)</p>
Seismic efficiency and seismic moment for small craters on Mars formed in layered uppermost crust
<p>Input files used in the paper submitted to JGR: Planets, November 2022.</p> <p>Table with location and sizes of all mapped craters.</p>
Relationships between egg size and maternal size, life-history forms, and habitats of Greenlandic Arctic charr (Salvelinus alpinus)
<p><span>Arctic charr (Salvelinus alpinus [L.] </span><span>complex) has been widely used as a model system for studies in evolutionary ecology because of its diversity in feeding ecology, habitat use, life-history forms, and associated morphologies observed in matured individuals. However, we still know relatively little about traits exhibited early in life of the species, although the trait diversity of matured individuals may largely be shaped during development. Egg size is a key determinant ofvarious traits exhibited early in life. Therefore, describing egg size variation within- and between-individuals as well as the link between egg size and adult traits will be a useful step in understanding the early life trait diversity of Arctic charr. Here, using Greenlandic Arctic charr, which includes alternative life-history forms (i.e., anadromous and resident) and spawning habitat use (i.e., lake- and river- spawner), we described egg size variation (i.e., clutch-mean egg diameter and within-clutch variation) and explored the link between egg size variation and female body length, life-history form, and spawning habitats. As in many other fishes, clutch-mean egg diameter increased with female body length. No significant effect of other female traits on clutch mean-egg diameter was detected, suggesting that female body size variation could be a direct cause of early life history trait variation. On the other hand, we found that the degree of within-clutch variation of the anadromous life-history form was higher than that of the resident life-history form. </span><span>T</span><span>he pattern could be interpreted in an adaptive context. For instance, given that the anadromous life-history form tends to be semelparous, anadromous </span><span>females </span><span>could decrease the likelihood of complete reproductive failure by producing variable-sized offspring within a clutch since at least some offspring are expected to be matched to the prevailing environment.</span></p>
Combined fluorescence fluctuation and spectrofluorometric measure-ments reveal a red-shifted, near-IR emissive photo-isomerized form of Cyanine 5
<p><strong>This folder contains all raw data underlying the results presented in a manuscript, accepted for publication in International Journal of Molecular Sciences, and entitled:</strong></p> <p> </p> <p><strong>Combined fluorescence fluctuation and spectrofluorometric measurements reveal a red-shifted, near-IR emissive photo-isomerized form of Cyanine 5</strong></p> <p> </p> <p><strong>Authored by:</strong></p> <p>Elin Sandberg <sup>1</sup>, Joachim Piguet <sup>1</sup>, Haichun Liu <sup>1</sup> and Jerker Widengren <sup>1,</sup>*</p> <p> </p> <p><sup>1</sup> Experimental Biomolecular Physics, Department of Applied Physics, Royal Institute of Technology (KTH), Stockholm, Sweden</p> <p><sup>* </sup>To whom correspondence should be addressed. Email: jwideng@kth.se. Tel: +46-8-7907813</p> <p> </p> <p><strong>The data files are grouped into the different techniques used to generate them, and refer to the figures/tables in the manuscript where the extracted results are presented. </strong></p> <p> </p> <p><strong>ABSTRACT</strong></p> <p>Cyanine fluorophores are extensively used in fluorescence spectroscopy and imaging. Upon continuous exciation, especially at excitation conditions used in single-molecule and super-resolution experiments, photo-isomerized states of cyanines easily reach population probabilies of around 50%. Still, effects of photo-isomerization are largely ignored in such experiments. Here, we studied the photo-isomerization of the pentamethine Cyanine 5 (Cy5) by two similar, yet complementary means to follow fluorophore blinking dynamics: fluorescence correlation spectroscopy (FCS) and transient state (TRAST) excitation-modulation spectroscopy. Additionally, we combined TRAST and spectrofluorimetry (spectral-TRAST), whereby emission spectra of Cy5 were recorded upon different rectangular pulse-train excitations. We also developed a framework for analyzing transitions between multiple emissive states in FCS and TRAST experiments, how the brightness of the different states is weighted, and what initial conditions that apply. Our FCS, TRAST and spectral-TRAST experiments showed significant differences in dark state relaxation amplitudes for different spectral detection ranges, which we attribute to an additional, red-shifted emissive photo-isomerized state of Cy5, not previously considered in FCS and single-molecule experiments. The photo-isomerization kinetics of this state indicate that it is formed under moderate excitation conditions, and its population and emission may thus deserve also more general consideration in fluorescence imaging and spectroscopy experiments.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.