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Figure 9 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 9 Maximum Likelihood (ML) tree of concatenated COI and 16SrDNA haplotypes of Monacha cantiana. New COI and 16SrDNA sequences of M. cantiana (Table 1, Suppl. material 5) were compared with concatenated COI and 16SrDNA sequences of M. cantiana s.l. and M. cartusiana obtained from GenBank (Suppl. materials 1, 2, 5). Length of sequences was 1444 positions (615 of COI + 829 of 16SrDNA). The Bayesian Information Criterion (BIC) specified T92+G+I the best nucleotide substitution model in MEGA7, or HKY+F+G4 for COI and TIM2+F+G4 for 16SrDNA partition in IQ-Tree, RAxML and MrBayes. Numbers next to main branches indicate (left to right): bootstrap supports above 50% calculated by NJ-MEGA7 (Saitou and Nei 1987), ML-MEGA7 (Kumar et al. 2016), IQ-Tree (Trifinopoulos et al. 2016), RAxML (Stamatakis 2014), and posterior probabilities by BI (Ronquist et al. 2012). The tree was rooted with Trochulus hispidus concatenated sequences obtained from GenBank (Suppl. material 5).
Figure 8 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 8 Maximum Likelihood (ML) tree of COI haplotypes of Monacha cantiana. New COI sequences of M. cantiana (Table 1) were compared with COI sequences of M. cantiana s.l., M. parumcincta, M. pantanellii and M. cartusiana obtained from GenBank (Suppl. material 1). Sequences were cut to 591 bp. HKY+G+I was the best nucleotide substitution model according to the Bayesian Information Criterion (BIC). The tree was rooted with Trochulus hispidus sequences obtained from GenBank (Suppl. material 1).
Figure 5 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 5 Distal genitalia genitalia of Monacha cantiana from France. Specimen Esc1 from Oise, Escales-Saint-Pierre (A–C) and specimen Epa1 from Somme, Épagne-Épagnette, roadside (D). Distal genitalia (A), transverse sections of medial epiphallus (B), apical penial papilla (C) and internal structure of distal genitalia (D).
Figure 7 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 7 Analysis of French specimens with "lineage" constraint on the original matrix (A–C) and Z-matrix (shape-related) (D–F) of selected genital sections. Principal component analysis (PCA) (A, D) and redundancy analysis (RDA) with groups shown as ellipses representing 95% confidence intervals with standard errors (B, E) and as convex hull polygons (C, F).
Figure 10 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 10 Maximum Likelihood (ML) tree of concatenated H3 and ITS2 (flanked with 5.8S and 28SrDNA) haplotypes of Monacha cantiana. New H3 and ITS2 sequences of M. cantiana (Table 1) were compared with concatenated H3 and ITS2 sequences of M. cantiana s.l. obtained from GenBank (Suppl. materials 3, 4). Length of sequences was 1054 positions (279 of H3 + 775 of ITS2). The Bayesian Information Criterion (BIC) specified T92+G+I the best nucleotide substitution model in MEGA7, or K2P+I for H3 and K3P+I for ITS2 partition in IQ-Tree, RAxML, and MrBayes. Numbers next to main branches indicate (left to right): bootstrap supports above 50% calculated by NJ-MEGA7 (Saitou and Nei 1987), ML-MEGA7 (Kumar et al. 2016), IQ-Tree (Trifinopoulos et al. 2016), RAxML (Stamatakis 2014) and posterior probabilities by BI (Ronquist et al. 2012). The tree was rooted with Trochulus hispidus concatenated sequences obtained from GenBank (Suppl. material 6).
Figure 3 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 3 Analysis of French specimens with "lineage" constraint on the original matrix (A–C) and Z-matrix (shape-related) (D–F) of selected shell sections. Principal component analysis (PCA) (A, D) and redundancy analysis (RDA) with groups shown as ellipses representing 95% confidence intervals with standard errors (B, E) and as convex hull polygons (C, F).
Figure 2 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 2 Shells of Monacha cantiana from France. Specimen Esc1 from Oise, Escales-Saint-Pierre (A), specimen Ble1 from Pas-de-Calais, Blecquenecques n. Marquise (B), specimen Pie1 from Seine-Maritime, Pierrepont (C) and specimen Bet1 from Seine-Maritime, Béthencourt n. Grandcourt (D).
Figure 1 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 1 Map of localities of the populations of Monacha cantiana analysed. See Table 1 for details of populations 1–26, Brulé and Bichain (2019) for populations 27 and 28, and Pieńkowska et al. (2019a) for populations 29–32.
Figure 4 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 4 Distal genitalia of Monacha cantiana from France. Specimen Bet1 from Seine-Maritime, Béthencourt n. Grandcourt (A–C) and specimen Ble1 from Pas-de-Calais, Blecquenecques n. Marquise (D–F). Distal genitalia (A, D), transverse sections of medial epiphallus (B, E) and apical penial papilla (C, F).
Figure 11 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 11 Maximum Likelihood (ML) tree of concatenated COI, 16SrDNA, H3, and ITS2 (flanked with 5.8S and 28SrDNA) haplotypes of Monacha cantiana. COI, 16SrDNA, H3, and ITS2 sequences of M. cantiana were compared with sequences of M. cantiana s.l. and M. cartusiana obtained from GenBank (Suppl. materials 1–4, 7). Length of sequences was 2498 positions (615 of COI, 829 of 16SrDNA, 279 of H3, and 775 of ITS2). Bayesian Information Criterion (BIC) specified GTR+G+I the best nucleotide substitution model in MEGA7, or HKY+F+G4 for COI, TIM2+F+I for 16SrDNA, TIM3e+I+G4 for H3, and K3P+I+G4 for ITS2 partition in IQ-Tree, RAxML, and MrBayes. Numbers next to main branches indicate (left to right): bootstrap support above 50% calculated by NJ-MEGA7 (Saitou and Nei 1987), ML-MEGA7 (Kumar et al. 2016), IQ-Tree (Trifinopoulos et al. 2016), RAxML (Stamatakis 2014), and posterior probabilities by BI (Ronquist et al. 2012). The tree was rooted with Trochulus hispidus concatenated sequences obtained from GenBank (Suppl. material 7).
Figure 6 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 6 Distal genitalia of of Monacha cantiana from France. Specimen Pie1 from Seine-Maritime, Pierrepont. Distal genitalia (A), transverse sections of medial epiphallus (B), apical penial papilla (C) and internal structure of distal genitalia (D).
Fig. 8 in A practical, step-by-step, guide to taxonomic comparisons using Procrustes geometric morphometrics and user-friendly software (part B): group comparisons
Fig. 8. PC1–PC2 summary scatterplot of species-specific allometric predictions (66% of total allometric shape). As an example, the opposite extremes of the allometric trajectories of yellow-bellied marmots (fla) and woodchucks (mon) are shown (magnified five times) using wireframes and thin plate spline deformation grids, drawn in TPSRelw by 'warping' variation along the regression lines in the PC1–PC2 subspace.
Fig. 6 in A practical, step-by-step, guide to taxonomic comparisons using Procrustes geometric morphometrics and user-friendly software (part A): introduction and preliminary analyses
Fig. 6. Box and jitter plot of species mandible CS. Red circles mark potential outliers. Species names are abbreviated as shown in Table 2.
Overview of the Literature Review process and Steps
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On the stepped leader properties with the evolution of thunderstorms in the low latitude (23。) of south China.
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Plate XIX, Figs G.16–G.17 – Perla hagenii Pictet, A.E., 1865 (his plate 2, Figs 1, 3), from the outskirts of Granada. G.16, adult ♀, entire insect; G.17, female subgenital plate. in Steps towards a revision of the Perla bipunctata Pictet, 1833 species complex (Plecoptera: Perlidae)
Plate XIX, Figs G.16–G.17 – Perla hagenii Pictet, A.E., 1865 (his plate 2, Figs 1, 3), from the outskirts of Granada. G.16, adult ♀, entire insect; G.17, female subgenital plate.
Plate XI, Figs D.7–D.12 – Type D in Steps towards a revision of the Perla bipunctata Pictet, 1833 species complex (Plecoptera: Perlidae)
Plate XI, Figs D.7–D.12 – Type D (British-Irish Isles). D.7, adult ♀, subgenital plate; D.8, basal section of cerci of nymph; D.9, tergites of ♀ nymph, dorsal view; D.10, marks on the femora of legs of nymph; D.11, pronotum and wing pads of mature ♀ nymph; D.12, head, pro-, meso- and metanotum of ♂b nymph.
Plate XXII, Figs J.1–J.9 – Type J (High Atlas, Morocco and Algeria, M'Corn and M'Goun massifs). J.1, adult ♂b, sclerotized apex of aedeagus, left side damaged (M'Corn); J.2, adult ♂b, mesal field with sensilla (M'Corn); J.3, adult ♂b, hemitergal lobes, lateral view (M'Corn); J.4, rounded paraprocts of nymph, ventral view (M'Goun); J.5, cerci of nymph, lateral view (M'Goun); J.6, tergites of nymph, dorsal view (M'Goun); J.7, head, pronotum and mesonotum of ♂b nymph (M'Goun); J.8, adult ♂b, head and pronotum (M'Corn); J.9, mediodorsal setation on tergites of nymph (M'Goun). in Steps towards a revision of the Perla bipunctata Pictet, 1833 species complex (Plecoptera: Perlidae)
Plate XXII, Figs J.1–J.9 – Type J (High Atlas, Morocco and Algeria, M'Corn and M'Goun massifs). J.1, adult ♂b, sclerotized apex of aedeagus, left side damaged (M'Corn); J.2, adult ♂b, mesal field with sensilla (M'Corn); J.3, adult ♂b, hemitergal lobes, lateral view (M'Corn); J.4, rounded paraprocts of nymph, ventral view (M'Goun); J.5, cerci of nymph, lateral view (M'Goun); J.6, tergites of nymph, dorsal view (M'Goun); J.7, head, pronotum and mesonotum of ♂b nymph (M'Goun); J.8, adult ♂b, head and pronotum (M'Corn); J.9, mediodorsal setation on tergites of nymph (M'Goun).
Plate XVII, Figs G.7–G.9 – Type G (Spain, Andalusia, River Castril). G.7, adult ♂, hemitergal lobes, lateral view; G.8, adult ♂, spines on aedeagal tube; G.9, adult ♀, subgenital plate. in Steps towards a revision of the Perla bipunctata Pictet, 1833 species complex (Plecoptera: Perlidae)
Plate XVII, Figs G.7–G.9 – Type G (Spain, Andalusia, River Castril). G.7, adult ♂, hemitergal lobes, lateral view; G.8, adult ♂, spines on aedeagal tube; G.9, adult ♀, subgenital plate.
Fig. 5 in A new piece in the puzzle for the riverine slugs of the Acochlidiidae (Gastropoda: Panpulmonata: Acochlidimorpha) helps tracing steps of their freshwater invasion
Fig. 5 Semischematic map of the central nervous system (CNS) of Wallacellia siputbiru n. gen. n. sp., posterodorsal view, anterior to the top. Based on reconstruction of paratype. Fully schematic map at lower right. Abbreviations: bcm, buccal commissure; bg, buccal ganglion; cbc, cerebro-buccal connective; ccm, cerebral commissure; cg, cerebral ganglion; cgl, "gland" above cerebral commissure; ey, eye; gn, genital nerve; gog, gastroesophageal ganglion; lpag, left parietal ganglion; lplg, left pleural ganglion; ltn, labial tentacle nerve; npag, parietal nerve; lvc, long connective of visceral loop; on?, putative oral nerve; opn, optic nerve; opg, optic ganglion; osg, osphradial ganglion; osn, osphradial nerve; pcm, pedal commissure; pg, pedal ganglion; pn1–pn4, pedal nerves; rhg, rhinophoral ganglion; rhn, rhinophoral nerve; rn, radular nerve; rpag, right parietal ganglion; rplg, right pleural ganglion; sc, statocyst; subg, subintestinal ganglion; supg, supraintestinal ganglion; vg, visceral ganglion; vn, visceral nerve
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.