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Figure S3 in Supplementary information: Bat coronavirus phylogeography in the Western Indian Ocean
Figure S3. Mean CoV prevalence (mean ± 95% confidence interval) as function of the bat sampling season in Mozambique.
Figure 6 in Bat coronavirus phylogeography in the Western Indian Ocean
Figure 6. Detail of the α-CoV clade. 229E-like CoVs generated in the study are indicated in bold. This sub-tree is a zoom on NL63 CoV clade from the tree depicted in Fig. 3. Bootstrap values>0.7 are indicated on the tree. Scale bar indicates mean number of nucleotide substitutions per site.
Supplementary material 1 from: Short G, Claassens L, Smith R, De Brauwer M, Hamilton H, Stat M, Harasti D (2020) Hippocampus nalu, a new species of pygmy seahorse from South Africa, and the first record of a pygmy seahorse from the Indian Ocean (Teleostei, Syngnathidae). ZooKeys 934: 141-156. https://doi.org/10.3897/zookeys.934.50924
Genetic distance analysis (uncorrected p distances) of COI sequence data from H. nalu, H. bargibanti, H. denise, H. japapigu, and H. pontohi
FIGURE 3. Ophiocoma cynthiae, a-d in New records of brittle stars (Echinodermata: Ophiuroidea) from the Lakshadweep atolls, northern Indian Ocean, with notes on Indophioderma ganapatii Sastry Marimuthu & Rajan, 2019
FIGURE 3. Ophiocoma cynthiae, a-d: IO/SS/ECD/00229, e-f: IO/SS/ECD/00230. (a) live specimen, ex situ, (b) disc, dorsal view, (c) proximal arm, dorsal view, (d) disc and proximal arm, ventral view, (e, f) dental plate, external and internal view, respectively. Scale bar: 2mm.
FIGURE 10 in Two new species of Leptarma (Decapoda, Brachyura, Sesarmidae) from the Western Indian Ocean with notes on their phylogeny
FIGURE 10. Comparisons of G1, apical part, dorsal views. A, L. dispersum n. sp. holotype, male (12.2×10.1) (MNHN-IU- 2012-660); B, L. lenzii, male (11.8×9.9) (ZRC 2018.1373); C, L. gazi, paratype, male (15.5×13.1) (MZUF 3671); D, L. leptosoma, male (19.0×17.5) (MZUF 4978); E, L. reunionense n. sp. holotype, male (11.8×9.92) (UF12356); F, L. liho, holotype, male (13.8×12.5) (SMF 36266); G, L. jamelense, holotype, male (11.5×10.0) (USNM 45917); H, L. moluccense, lectotype, male (14.6×13.6) (RMNH.CRUS.D 102590); I, L. paucitorum, holotype, male (19.9×18.8) (MZB.cru. 2243).
FIGURE 7 in Two new species of Leptarma (Decapoda, Brachyura, Sesarmidae) from the Western Indian Ocean with notes on their phylogeny
FIGURE 7. Comparisons of carapace and ambulatory legs, dorsal views. A, L. dispersum n. sp. holotype, male (12.2×10.1) (MNHN-IU-2012-660); B, L. lenzii, male (11.8×9.9) (ZRC 2018.1373); C, L. gazi, paratype, male (15.5×13.1) (MZUF 3671); D, L. leptosoma, male (19.0×17.5) (MZUF 4978); E, L. reunionense n. sp. holotype, male (11.8×9.92) (UF12356); F, L. liho, holotype, male (13.8×12.5) (SMF 36266); G, L. moluccense, lectotype, male (14.6×13.6) (RMNH.CRUS.D 102590); H, L. paucitorum, holotype, male (19.9×18.8) (MZB.cru. 2243).
FIGURE 5. L. reunionense n in Two new species of Leptarma (Decapoda, Brachyura, Sesarmidae) from the Western Indian Ocean with notes on their phylogeny
FIGURE 5. L. reunionense n. sp. holotype, male (11.8×9.92) (UF12356). A, frontal view; B, right G1, dorsal view (arrows pointing to broken part); C, right chela, outer view; D, chelar dactylar tubercles, outer view; E, right chela, dorsal view; F, chelar dactylar tubercles, dorsal view; G, pleon; H, pleonal somites 1–3.
FIGURE 1. A in Two new species of Leptarma (Decapoda, Brachyura, Sesarmidae) from the Western Indian Ocean with notes on their phylogeny
FIGURE 1. A, Phylogenetic consensus tree constructed with Maximum Likelihood (ML) and Bayesian Inference (BI) of the COX1 gene, focusing on Leptarma species; four species of Parasesarma were added as outgroups (only confidence values higher than 50% for ML (bootstrap value, bt) and 90% for BI (posterior probabilities, pp) are shown in the trees as bt/pp; B, C, maximum parsimony haplotype network of COX1 gene constructed with PopART for specimens of B, L. dispersum n. sp. and allied species; C, L. reunionense n. sp. and allied species.
FIGURE 5 in Review of the Indian Ocean spikefish genus Mephisto (Tetraodontiformes Triacanthodidae)
FIGURE 5. Mid-body scales of Mephisto. Anterior to left. A–C Mephisto fraserbrunneri, USNM 350153, 105.8 mm SL. A. Patch of scales. White arrows indicate tips of bifurcate spinules at base of central spinules; black arrows indicate tips of central spinules. B. Single scale showing five spinules, including a central spinule with a bifurcate spinule at its base and both branched and unbranched dorsal and ventral spinules. White arrows indicate tips of single or bifurcate spinules; black arrow indicates central spinule tip. C. Illustration of single scale from M. fraserbrunneri to show relative length of spinules when viewed obliquely and for comparison with images B and D. D. Illustration of a single scale of M. albomaculosus, NSMT-P 132271, 94.4 mm SL. Illustration from Matsuura et al. (2018), reprinted with permission from the Ichthyological Society of Japan. Note, scale has been reflected so image faces left. In large specimens of both M. fraserbrunneri and M. albomaculosus the central spinule has a bifurcate branch. Apparent differences in shape of scale plates in parts C and D is because the regions of overlap are not shown in part D.
FIGURE 3 in Review of the Indian Ocean spikefish genus Mephisto (Tetraodontiformes Triacanthodidae)
FIGURE 3. Micro-CT scan of Mephisto fraserbrunneri, ZMH 5629, 66.0 mm SL, showing subfamilial characters. A. Lateral view, highlighting extent of pelvis. B. Ventral view showing flat, scale-covered pelvis that tapers to a point posteriorly, much wider anteriorly between the pelvic spines than posteriorly. C. Dorsal view of the rear of the skull showing the flattened supraoccipital (yellow) and its low crest, with the supraoccipital not separating the epioccipitals (gray) on the dorsal surface of the skull. D. Oblique view of the rear of the skull highlighting the median, narrow, supraoccipital crest located in the middle of the supraoccipital.
FIGURE 4 in Review of the Indian Ocean spikefish genus Mephisto (Tetraodontiformes Triacanthodidae)
FIGURE 4. Mephisto fraserbrunneri, University of Kerala DABFUK/FI/301, 64.5 mm SL. A. Specimen in alcohol. White arrows indicate the length of the gill opening, which is the diagnostic character for Mephisto. B. Radiograph of same specimen. Images by Sandra Raredon.
FIGURE 2 in Review of the Indian Ocean spikefish genus Mephisto (Tetraodontiformes Triacanthodidae)
FIGURE 2. Distribution and habitat of Mephisto. A. All known records of Mephisto, including holotypes of M. fraserbrunneri and M. albomaculosus, non-type specimens of M. fraserbrunneri, and photographic records of specimens that were not retained. B. Detail of region in white box in part A highlighting collection localities on continental shelf off Somalia and Socotra, and Error Seamount (part of the Carlsberg Ridge). Bathymetric data from Smith and Sandwell (1997).
FIGURE 2 in A new species of Nemipterus (Pisces: Nemipteridae) from the Western Indian Ocean
FIGURE 2. Holotype of N. elaine n. sp., SAIAB 81939, 140.8 mm SL, preserved specimen. (photo: B.C. Russell)
FIGURE 1 in A new species of Nemipterus (Pisces: Nemipteridae) from the Western Indian Ocean
FIGURE 1. Holotype of N. elaine n. sp., SAIAB 81939, 140.8 mm SL, fresh specimen (photo: P. Heemstra)
FIGURE 4 in A new species of the cardinalfish genus Apogon (Teleostei, Apogonidae) from the southern Red Sea and Indian Ocean with comments on phylogenetic relationships within the Apogonini
FIGURE 4. Species of the Apogon deetsie group. A: A. deetsie, BPBM 37400, holotype, 40.4 mm SL, Oahu, Hawaiian Islands; B: A. rubrifuscus, BPBM 39346, holotype, 101.5 mm SL, Easter Island; C: A. rubrifuscus, USNM 440058=MNHN IC 2008- 0997 [MBIO1411], 33.4 mm SL, Moorea, French Polynesia. Photos by J.E. Randall (A & B) and J.T. Williams (C). Specimen length for image B is as given in the original description depicting the same photo.
FIGURE 5 in A new species of the cardinalfish genus Apogon (Teleostei, Apogonidae) from the southern Red Sea and Indian Ocean with comments on phylogenetic relationships within the Apogonini
FIGURE 5. Species of the Apogon unicolor group. A: A. caudicinctus, BPBM 13002, holotype, 52.5 mm SL, Rapa Island; B: A. caudicinctus, NBE106, 84.0 mm SL, Madagascar; C: A. dianthus, BPBM 9360, holotype, 48.0 mm SL, Palau Islands; D: A. soloriens, KAUM-I.74702, 23.5 cm SL, Bonin Islands, Ogasawara Islands; E: A. talboti, SMF 35881 [KAU17-242], 44.0 mm SL, Abkar I., Farasan Archipelago, Saudi Arabia; F: A. unicolor, KAUM-I29415, 105 mm SL, Iou-jima I., Japan. Specimen length for images A & C is as given in the original descriptions depicting the same photos. Photos by J.E. Randall (A & C), N. Hubert (B), Kagoshima University Museum (D & F), and S.V. Bogorodsky (E).
FIGURE 3 in A new species of the cardinalfish genus Apogon (Teleostei, Apogonidae) from the southern Red Sea and Indian Ocean with comments on phylogenetic relationships within the Apogonini
FIGURE 3. Maximum likelihood phylogeny of the apogonine cardinalfishes (tribe Apogonini) based on a concatenated alignment of (partial) mitochondrial COI and rDNA and nuclear RAG1 and ENC1 genes (specimens for which more than COI sequences were available are in bold letters). Branch support values were obtained by 200 bootstrapped replicates; only bootstrap values above 50 percent are shown (* = 100 %). The scale bar represents average number of nucleotide substitutions. M = sequences retrieved from Mabuchi et al. (2014); P = sequences obtained in the present study; B = sequence retrieved from BOLD; C = sequence retrieved from CRIOBE; G = sequence retrieved from GenBank; ID = species ID re-assigned herein. Collection location of sequence voucher is provided if available (n/a = not available).
FIGURE 1. Apogon fugax new species. A in A new species of the cardinalfish genus Apogon (Teleostei, Apogonidae) from the southern Red Sea and Indian Ocean with comments on phylogenetic relationships within the Apogonini
FIGURE 1. Apogon fugax new species. A: SMF 35884 [KAU14-542], holotype, fresh specimen, 46.2 mm SL, off Jizan, Saudi Arabia, Red Sea; B: SAIAB 203703, paratype, fresh specimen, 59.7 mm SL, Myanmar; C: CSIRO H 6378-16 [BW-A4835], paratype, preserved specimen, 52.9 mm SL, Western Australia. Photos by S.V. Bogorodsky (A), O. Alvheim (B), and curtesy of the CSIRO Australian National Fish Collection (C).
FIGURE 6 in Hemitrygon yemenensis sp. nov., a new species of stingray (Myliobatoidea Dasyatidae) from the northwestern Indian Ocean
FIGURE 6. Type locality (★) of Hemitrygon yemenensis sp. nov. in eastern Yemen on the Arabian peninsula. Other locations that Wilhelm and Marie Hein visited on the 1901-1902 South Arabian expedition are indicated (●).
FIGURE 4 in Hemitrygon yemenensis sp. nov., a new species of stingray (Myliobatoidea Dasyatidae) from the northwestern Indian Ocean
FIGURE 4. Scapular region of Hemitrygon yemenensis sp. nov. (NMW 60783, adult male holotype 223 mm DW), showing stellate denticles (top), medial thorns (centre) and scapular thorns (left and right).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.