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1,102 results for “plant diversity”
Museomics contributes to the spatiotemporal assessment of genetic diversity and structure in wild and ex situ conservation organisms: a case study of three endangered coastal plants in Japan
<p><span>Understanding </span><span>the extent to which </span><span>genetic diversity of wild populations in ex</span> <span>situ</span><span> conservation can be retained is </span><span>crucial</span><span> for the management of </span><span>such</span><span> populations. Wild individuals collected in the target area in the past </span><span>and</span><span> present can be used to estimate the number of alleles lost over time in wild populations and</span><span> thereby</span><span> the number of alleles whose loss could be </span><span>prevented</span><span> by ex</span> <span>situ</span><span> conservation. </span><span>Here</span><span>, we assessed the genetic diversity of wild and ex</span> <span>situ</span><span> conservation populations of three endangered coastal herb species</span><span>,</span><span> <em>Cirsium maritimum</em> Makino (Asteraceae), <em>Linaria japonica</em> Miq. (Plantaginaceae</span><span>) and</span><span> <em>Suaeda glauca</em></span><span><em> </em>(Bunge) Bunge (Amaranthaceae), which are endangered </span><span>species on</span><span> Awaji Island, Hyogo Prefecture, Japan, via multiplexed inter-simple sequence repeat genotyping by sequencing (MIG-seq). We </span><span>incorporated</span><span> the museomics approach, which </span><span>involves conducting</span><span> genetic analyses of museum specimens collected from the targeted wild populations in the past to estimate the temporal transition of genetic diversity in wild populations and the number of alleles maintai</span><span>ned in <em>ex situ</em></span><span> conservation. </span><span>Our </span><span>results </span><span>reveal</span><span> a declining trend in genetic diversity in the wild populations of all </span><span>investigated</span><span> species, although </span><span>this trend is </span><span>not significant. In all the species, </span><span>numerous</span><span> alleles were already lost in current wild populations, </span><span>whereas they</span><span> were </span><span>present</span><span> in the past wild and ex</span> <span>situ</span><span> conservation populations. Our study </span><span>indicates</span><span> that extinct alleles in current wild populations have been maintained in ex</span> <span>situ</span><span> conservation</span><span> by museomics approach. These </span><span>appro</span><span>aches </span><span>were effective in verifying</span><span> the genetic diversity retention effects of <em>ex</em></span><em> <span>situ</span></em><span> conservation populations.</span></p>
Spatial patterns and effects of invasive plants on soil microbial activity and diversity along river corridors - raw data
<p>environmental data, plant community data, CLPP profiles, microbial activity data</p>
Figure 3 in Plant diversity in Sabkha ecosystems of arid region: spatial and environmental drivers
Figure 3. Ordination of the selected and signficant vectors of principal coordinates of neighbour matrices (PCNM) at large spatial scale in Saudi Arabia. The X and Y axes are latitude and longitude of the 38 sites, respectively. Three PCNM axes (spatial vectors) retained after forward selection procedures. Plotting the PCNM axes were performed using the function ordisurf of vegan package in R program 2.14.1.
Supplementary material 5 from: Zhou T, Jin X-H (2018) Molecular systematics and the evolution of mycoheterotrophy of tribe Neottieae (Orchidaceae, Epidendroideae). In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 39-49. https://doi.org/10.3897/phytokeys.94.21346
Alignment of matK : Data type: Fasta file.
Supplementary material 4 from: Zhou T, Jin X-H (2018) Molecular systematics and the evolution of mycoheterotrophy of tribe Neottieae (Orchidaceae, Epidendroideae). In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 39-49. https://doi.org/10.3897/phytokeys.94.21346
Alignment of ITS : Data type: Fasta file.
Supplementary material 3 from: Zhou T, Jin X-H (2018) Molecular systematics and the evolution of mycoheterotrophy of tribe Neottieae (Orchidaceae, Epidendroideae). In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 39-49. https://doi.org/10.3897/phytokeys.94.21346
Table 3 : Data type: Word document.
Supplementary material 2 from: Zhou T, Jin X-H (2018) Molecular systematics and the evolution of mycoheterotrophy of tribe Neottieae (Orchidaceae, Epidendroideae). In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 39-49. https://doi.org/10.3897/phytokeys.94.21346
Table 2 : Data type: Word document.
Supplementary material 1 from: Zhou T, Jin X-H (2018) Molecular systematics and the evolution of mycoheterotrophy of tribe Neottieae (Orchidaceae, Epidendroideae). In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 39-49. https://doi.org/10.3897/phytokeys.94.21346
Table 1 : Data type: Word document.
Supplementary material 6 from: Zhou T, Jin X-H (2018) Molecular systematics and the evolution of mycoheterotrophy of tribe Neottieae (Orchidaceae, Epidendroideae). In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 39-49. https://doi.org/10.3897/phytokeys.94.21346
Alignment of rbcL : Data type: Fasta file.
Figure 2 from: Tan Y-H, Li D-R, Zhou S-S, Chen Y-J, Bramley GLC, Li B (2018) Premna grandipaniculata (Lamiaceae, Premnoideae), a remarkable new species from north Myanmar. In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 117-123. https://doi.org/10.3897/phytokeys.94.22033
Figure 2 Line drawing of Premna grandipaniculata Y. H. Tan & Bo Li, sp. nov. A a branchlet with leaves and inflorescence B abaxial surface of leaf blade C flowers D. dissected corolla and stamens in a bud E calyx and style.
Figure 2 from: Chen W-H, Radbouchoom S, Nguyen HQ, Nguyen HT, Nguyen KS, Shui Y-M (2018) Seven new species of Begonia (Begoniaceae) in Northern Vietnam and Southern China. In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 65-85. https://doi.org/10.3897/phytokeys.94.23248
Figure 2 Begonia albopunctata Y.M. Shui, W.H. Chen & H.Q. Nguyen A Habitat B Inflorescence C View of adaxial leaf D Close-up of adaxial leaf E View of abaxial leaf F Close-up of abaxial leaf G Pistillate flower, side view H Staminate flower, face view I Pistillate flower, face view J Fruits K Serial cross sections of ovary. (A–J photographs by Y.M. Shui; K by S. Radbouchoom).
Figure 1 from: Yang B, Ding H-B, Zhou S-S, Zhu X, Li R, Maw MB, Tan Y-H (2018) Aristolochia sinoburmanica (Aristolochiaceae), a new species from north Myanmar. In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 13-22. https://doi.org/10.3897/phytokeys.94.21557
Figure 1 Aristolochia sinoburmanica Y.H.Tan & B.Yang, sp. nov. A Habitat B Flowering branch C Flower (front view) D Anthers and gynostemium E Opened flower (showing the inside structure) F Opened flower (showing the inside structure). Illustration by Zhengmeng Yang.
Figure 3 from: Aung YL, Jin X-H (2018) Gastrodia kachinensis (Orchidaceae), a new species from Myanmar. In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 23-29. https://doi.org/10.3897/phytokeys.94.21348
Figure 3 Gastrodia kachinensis X.H.Jin & L.A.Ye. A Inflorescence B Longitudinal section of sepal tube, showing two petals C Front view of column and lip, showing the stigma area with sectile pollinia D Sepal tube, lip, lateral view of column and the base of lip, showing a pair of sub-globose calli at lip hypochile E Rhizome. Photographed by X.H. Jin.
Figure 1 from: Zhou T, Jin X-H (2018) Molecular systematics and the evolution of mycoheterotrophy of tribe Neottieae (Orchidaceae, Epidendroideae). In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 39-49. https://doi.org/10.3897/phytokeys.94.21346
Figure 1 Phylogram obtained from Bayesian Inference analysis of combined nrDNA ITS, matK and rbcL data. Numbers at nodes are Bayesian posterior probabilities and bootstrap percentages (≥ 50%), respectively. ''–'' indicates that the node was not supported in MP analysis, asterisk (*) represent 100% support and red colour denotes species that are mycotrophic herbs.
Figure 6 from: Chen W-H, Radbouchoom S, Nguyen HQ, Nguyen HT, Nguyen KS, Shui Y-M (2018) Seven new species of Begonia (Begoniaceae) in Northern Vietnam and Southern China. In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 65-85. https://doi.org/10.3897/phytokeys.94.23248
Figure 6 Begonia minissima H.Q. Nguyen, Y.M. Shui & W.H. Chen A Habitat B Plant with rhizome C View of adaxial leaf D View of abaxial leaf E Inflorescence F Staminate flower, face view, side view and dorsal view G Pistillate flower, side views and dorsal view H Capsule I Serial cross sections of ovary. (A–D photographs by Y.M. Shui; E–I by S. Radbouchoom).
Figure 2 from: Hong X, Li Z-L, Maciejewski S, Wen F, Do TV (2018) Didymocarpus puhoatensis (Gesneriaceae), a new species from Vietnam. In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 87-93. https://doi.org/10.3897/phytokeys.94.21650
Figure 2 Flower of Didymocarpus puhoatensis X.Hong & F.Wen A–B Frontal view of corolla, showing the disc-like stigma C Top view of corolla D Upward view of corolla E Opened corolla, showing stamens and staminodes F Pistils without corolla.
Figure 1 from: Tan Y-H, Li D-R, Zhou S-S, Chen Y-J, Bramley GLC, Li B (2018) Premna grandipaniculata (Lamiaceae, Premnoideae), a remarkable new species from north Myanmar. In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 117-123. https://doi.org/10.3897/phytokeys.94.22033
Figure 1 Morphological comparisons amongst Premna grandipaniculata (A–C), P. bracteata (D–F) and P. interrupta (G–I). A, D, G habit B, E, H branchlets with leaves C, F, I inflorescences.
Figure 2 from: Liu Q, Zhou S-S, Jin X-H, Pan B, Maung KW, Zyaw M, Li R, Quan R-C, Tan Y-H (2018) Dendrobium naungmungense (Orchidaceae: Epidendroideae; Dendrobieae), a new species from Kachin State, Myanmar. In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeastern Asia. PhytoKeys 94: 31-38. https://doi.org/10.3897/phytokeys.94.21337
Figure 2 Dendrobium naungmungense. A Habitat B Plant C Flower D Lateral view of flower E Sepals and petals F Column G Front view of labellum H Lateral view of labellum J Abaxial and adaxial anther cap K Pollinarium I Column wing (Photographed by Q. Liu).
Figure 1 from: Chen W-H, Radbouchoom S, Nguyen HQ, Nguyen HT, Nguyen KS, Shui Y-M (2018) Seven new species of Begonia (Begoniaceae) in Northern Vietnam and Southern China. In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 65-85. https://doi.org/10.3897/phytokeys.94.23248
Figure 1 The geographical distribution of the seven new species of Begonia (Begoniaceae) from North Vietnam and South China under QGIS version 2.14.19.
Figure 4 from: Chen WH, Nguyen QH, Chen RZ, Nguyen TH, Nguyen VT, Nguyen SK, Möller M, Middleton DJ, Shui Y-M (2018) Two new species of Oreocharis (Gesneriaceae) from Fan Si Pan, the highest mountain in Vietnam. In: Jin X-H, Shui Y-M, Tan Y-H, Kang M (Eds) Plant diversity in Southeast Asia. PhytoKeys 94: 95-106. https://doi.org/10.3897/phytokeys.94.21329
Figure 4 Oreocharis longituba W.H.Chen, Q.H.Nguyen & Y.M.Shui, sp. nov. (all drawings based on the holotype Y.M. Shui et al. B2013-551 in KUN, drawn by J.X. Liu). A Habit B Abaxial leaf surface C Opening flower from below showing the inflated part near the distal end of the corolla tube D Open flower from above E Opened corolla showing two pairs of stamens F Pistil (immature at male stage), disc and calyx G Front view of flower.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.