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FIGURE 7 in A New Species of Red-eyed frog of the genus Pristimantis (Anura: Strabomantidae) from the Western Slope of the Cordillera Occidental, Risaralda, Colombia
FIGURE 7. Adult male of Pristimantis blasi sp. nov., and comparisons with other similar taxa: (A) P. blasi sp. nov, paratype (ARUQ1027); (B) P. bicolor JDL14350, SVL 27.4 mm, adult male; (C) P. cruentus, Cerro Tacarcuna, Provincia de Darien, Panamá, individual not collected; (D) P. erythropleura, Natural Reserve Rincón Santo, municipality of Pijao, department of Quindío, Colombia, adult female not collected; (E); P. orpacobates, municipality of Pueblo Rico, department of Risaralda, Colombia, adult male not collected; (F) P. penelopus MHUA-A 12274, SVL 32.0 mm, adult male. Photos: (A and D) SDM; (B) John D. Lynch; (C and E) Marco Rada and (F) Mauricio Rivera-Correa.
FIGURE 8 in A New Species of Red-eyed frog of the genus Pristimantis (Anura: Strabomantidae) from the Western Slope of the Cordillera Occidental, Risaralda, Colombia
FIGURE 8. Variation in lateral view of groin color of Pristimantis blasi sp. nov., and other similar species: (A) P. blasi sp. nov., holotype (ARUQ1291); (B) P. cruentus, Cerro Tacarcuna, Provincia de Darien, Panamá, not collected; (C) P. erythropleura, Natural Reserve Rincón Santo, municipality of Pijao, department of Quindío, Colombia, adult female, not collected; (D) P. erythropleura, Natural Reserve La Patasola, municipality of Salento, department of Quindío, adult male, not collected; (E) P. orpacobates MHUA-A09036, adult male; (F) P. penelopus MHUA-A 12274, SVL 32.0 mm, adult male. Photos: (A, C and D) SDM; (B and E) Marco Rada and (F) Mauricio Rivera-Correa.
FIGURE 6 in A New Species of Red-eyed frog of the genus Pristimantis (Anura: Strabomantidae) from the Western Slope of the Cordillera Occidental, Risaralda, Colombia
FIGURE 6. (A) The cloud forest of type locality of Pristimantis blasi sp. nov. (B) Landscape showing the mountains of the ESMA Alto Amurrupá, Santa Cecilia, Municipality of Pueblo Rico. (C) Illustration of Blas A. Cárdenas holding P. blasi sp. nov. Photographs by Mario A. Santana-Tobar and SDM and Illustration by MMM.
FIGURE 5 in A New Species of Red-eyed frog of the genus Pristimantis (Anura: Strabomantidae) from the Western Slope of the Cordillera Occidental, Risaralda, Colombia
FIGURE 5. Ventral patterns of Pristimantis blasi sp. nov. (A) CUS-A145 (B) ARUQ1026, (C) ARUQ1291, (D) ARUQ1027 and (E) ARUQ1028.
FIGURE 4 in A New Species of Red-eyed frog of the genus Pristimantis (Anura: Strabomantidae) from the Western Slope of the Cordillera Occidental, Risaralda, Colombia
FIGURE 4. Illustration of dorsal patterns of Pristimantis blasi sp. nov. (A) ARUQ1030, (B) ARUQ1026, (C) ARUQ1291, (D) ARUQ1028 and (E) ARUQ1027. Illustration by MMM.
FIGURE 3 in A New Species of Red-eyed frog of the genus Pristimantis (Anura: Strabomantidae) from the Western Slope of the Cordillera Occidental, Risaralda, Colombia
FIGURE 3. Illustration of the morphological characteristics the head (lateral and dorsal view), palmar and foot surface of holotype (ARUQ1291) Pristimantis blasi sp. nov. Scale bar = 5.0 mm. Illustration by SDM and MMM.
FIGURE 1 in A New Species of Red-eyed frog of the genus Pristimantis (Anura: Strabomantidae) from the Western Slope of the Cordillera Occidental, Risaralda, Colombia
FIGURE 1. Geographic location in Colombia showing the type locality of Pristimantis blasi sp. nov. in the western slope of the Cordillera Occidental. (A) Red dot shows the type locality. (B) Map of the Ethnic Special Management Area (ESMA) Alto Amurrupá (10823 Ha), Santa Cecilia, municipality of Pueblo Rico, department of Risaralda, Colombia. Map produced using Arc Map, Google earth.
Screening coffee genotypes for brown eye spot resistance in Brazil
<p><span>Several researchers have attempted to develop coffee plants that are resistant to brown eye spot (BES); however, no coffee cultivars are resistant to the disease. In the present study, a blend of strains from <i>Cercospora coffeicola </i>was inoculated into 19 Brazilian commercial cultivars and 41 accessions from the Germplasm Collection of Minas Gerais to evaluate the genetic resistance ability within the population and select superior genotypes for the breeding program. After predicting the genotypic values of the studied material, the evaluations number necessary for selecting genotypes with accuracy and efficiency was determined based on the data of severity to BES. The action of defense mechanisms plant was also investigated by assessing the levels of total soluble phenolic compounds and soluble lignin in contrasting genotypes for disease susceptibility. Based on the results, the accession MG 1207 Sumatra, had an intrinsic genetic capacity to maintain low levels of severity to BES. The genotype MG 1207 Sumatra can substantially contribute to the development of new cultivars, which may lead to the reduced use of pesticides. According to the accuracy and efficiency results obtained, four evaluations BES severity are sufficient to achieve accuracy, providing expressive genetic gains. Finally, the levels of lignin and phenolic compounds were not found to be associated with the resistance of coffee genotypes to BES.</span></p>
Semantic object-scene inconsistencies affect eye movements, but not in the way predicted by contextualized meaning maps - data
<p>Data from the article<strong><em> Semantic object-scene inconsistencies affect eye movements, but not in the way predicted by contextualized meaning maps</em></strong> published in Journal of Vision.</p> <p>code: https://zenodo.org/record/5999215<br> data: https://zenodo.org/record/5999046</p> <p><br> Marek A. Pedziwiatr<br> marek.pedziwi@gmail.com<br> February 2022</p>
Emergence of a geometric pattern of cell fates from tissue-scale mechanics in the Drosophila eye
<p>Pattern formation of biological structures involves the arrangement of different types of cells in an ordered spatial configuration. In this study, we investigate the mechanism of patterning the <em>Drosophila</em> eye into a precise triangular grid of photoreceptor clusters called ommatidia. Previous studies had led to a long-standing biochemical model whereby a reaction-diffusion process is templated by recently formed ommatidia to propagate a molecular prepattern across the eye epithelium. Here, we find that the templating mechanism is instead, mechanical in origin; newly born columns of ommatidia serve as a template to spatially pattern cell flows that move the cells in the epithelium into position to form each new column of ommatidia. Cell flow is generated by a pressure gradient that is caused by a narrow zone of cell dilation precisely positioned behind the growing wavefront of ommatidia. The newly formed lattice grid of ommatidia cells are immobile, deflecting and focusing the flow of other cells. Thus, the self-organization of a regular pattern of cell fates in an epithelium is mechanically driven.</p>
On following pages: 146. Hairy Big-eyed Bat (Chiroderma villosum); 147. Brazilian Big-eyed Bat (Chiroderma doriae); 148. Vizotto's Big-eyed Bat (Chiroderma vizottoi); 149. Bidentate Yellow-eared Bat (Vampyriscus bidens); 150. Brock's Yellow-eared Bat (Vampyriscus brocki); 151. Striped Yellow-eared Bat (Vampyriscus nymphaea); 152. Baker's Tent-making Bat (Uroderma bakeri); 153. Common Tent-making Bat (Uroderma bilobatum); 154. Pacific Tent-making Bat (Uroderma convexum); 155. Davis's Tent-making Bat (Uroderma davisi); 156. Brown Tent-making Bat (Uroderma magnirostrum); 157. Kalko's Yellow-eared Bat (Vampyressa elisabethae); 158. Melissa's Yellow-eared Bat (Vampyressa melissa); 159. Quechuan Yellow-eared Bat (Vampyressa sinchi); 160. NorthernLittle Yellow-eared Bat (Vampyressa thyone); 161. Southern Little Yellow-eared Bat (Vampyressa pusilla); 162. MacConnell's Bat (Mesophylla macconnell)); 163. Caracciolo's Stripe-faced Bat (Vampyrodes caracciol)); 164. Great Stripe-faced Bat (Vampyrodes major). in Phyllostomidae
On following pages: 146. Hairy Big-eyed Bat (Chiroderma villosum); 147. Brazilian Big-eyed Bat (Chiroderma doriae); 148. Vizotto's Big-eyed Bat (Chiroderma vizottoi); 149. Bidentate Yellow-eared Bat (Vampyriscus bidens); 150. Brock's Yellow-eared Bat (Vampyriscus brocki); 151. Striped Yellow-eared Bat (Vampyriscus nymphaea); 152. Baker's Tent-making Bat (Uroderma bakeri); 153. Common Tent-making Bat (Uroderma bilobatum); 154. Pacific Tent-making Bat (Uroderma convexum); 155. Davis's Tent-making Bat (Uroderma davisi); 156. Brown Tent-making Bat (Uroderma magnirostrum); 157. Kalko's Yellow-eared Bat (Vampyressa elisabethae); 158. Melissa's Yellow-eared Bat (Vampyressa melissa); 159. Quechuan Yellow-eared Bat (Vampyressa sinchi); 160. NorthernLittle Yellow-eared Bat (Vampyressa thyone); 161. Southern Little Yellow-eared Bat (Vampyressa pusilla); 162. MacConnell's Bat (Mesophylla macconnell)); 163. Caracciolo's Stripe-faced Bat (Vampyrodes caracciol)); 164. Great Stripe-faced Bat (Vampyrodes major).
Publication data of How to improve data quality in dog eye tracking
<p>Publication data of How to improve data quality in dog eye tracking</p>
The impact of music and stretched time on pupillary responses and eye movements in slow-motion film scenes
<p>Dataset of the article "The impact of music and stretched time on pupillary responses and eye movements in slow-motion film scenes" published in Journal of Eye Movement Research.</p>
Evaluating the role of body size and habitat type in movement behavior in human-dominated systems: A frog's eye view
<p>Animal movement is a key process that connects and maintains populations on the landscape, yet for most species we do not understand how intrinsic and extrinsic factors interact to influence individual movement behavior. </p> <p>Land-use/land-cover changes highlight that connectivity among populations will depend upon an individual's ability to traverse habitats, which may vary as a result of habitat permeability, individual condition, or a combination of these factors.</p> <p>We examined the effects of intrinsic (body size) and extrinsic (habitat type) factors on desiccation tolerance, movement, and orientation in three anuran species (American toads, <em>Anaxyrus americanus</em>; northern leopard frogs, <em>Lithobates pipiens</em>; and Blanchard's cricket frogs, <em>Acris blanchardi</em>) using laboratory and field studies to connect the effects of susceptibility to desiccation, size, and movement behavior in single habitat types and at habitat edges.</p> <p>Smaller anurans were more vulnerable to desiccation, particularly for species that metamorphose at relatively small sizes. Habitat type had the strongest effect on movement, while body size had more situational and species-specific effects on movement. We found that individuals moved the farthest in habitat types that, when given the choice, they oriented away from, suggesting that these habitats are less favorable and could represent barriers for movement.</p> <p>Overall, our work demonstrated that differences in habitat type had strong impacts on individual movement behavior and influenced choices at habitat edges. By integrating intrinsic and extrinsic factors into our study, we provided evidence that population connectivity may be influenced not only by the habitat matrix, but the condition of the individuals leaving the habitat patch.</p>
Distribution. NW coastal Madagascar, restricted to the Sahamalaza Peninsula and the adjacent mainland; the biogeography of this area and the distribution pattern of the sympatric Blue-eyed Black Lemur (Eulemurflavifrons) make it likely that the boundaries of the range of the Sahamalaza Sportive Lemur are the Andranomalaza River in the N and the Maevarano Riverin the S. Field studies to determine the full extent of the distribution and that of neighboring Mittermeier's Sportive Lemur (L. mittermeiert) are underway. in Lepilemuridae
Distribution. NW coastal Madagascar, restricted to the Sahamalaza Peninsula and the adjacent mainland; the biogeography of this area and the distribution pattern of the sympatric Blue-eyed Black Lemur (Eulemurflavifrons) make it likely that the boundaries of the range of the Sahamalaza Sportive Lemur are the Andranomalaza River in the N and the Maevarano Riverin the S. Field studies to determine the full extent of the distribution and that of neighboring Mittermeier's Sportive Lemur (L. mittermeiert) are underway.
On following pages: 11. White-fronted Brown Lemur (Eulemur albifrons); 12. Sanford's Brown Lemur (Eulemur sanford); 13. White-collared Brown Lemur (Eulemur cinereiceps); 14. Red-collared Brown Lemur (Eulemur collaris); 15. Black Lemur (Eulemur macaco); 16. Blue-eyed Black Lemur (Eulemurflavifrons); 17. Crowned Lemur (Eulemur coronatus); 18. Red-bellied Lemur (Eulemur rubriventer); 19. Mongoose Lemur (Eulemur mongoz). in Lemuridae
On following pages: 11. White-fronted Brown Lemur (Eulemur albifrons); 12. Sanford's Brown Lemur (Eulemur sanford); 13. White-collared Brown Lemur (Eulemur cinereiceps); 14. Red-collared Brown Lemur (Eulemur collaris); 15. Black Lemur (Eulemur macaco); 16. Blue-eyed Black Lemur (Eulemurflavifrons); 17. Crowned Lemur (Eulemur coronatus); 18. Red-bellied Lemur (Eulemur rubriventer); 19. Mongoose Lemur (Eulemur mongoz).
On following pages: 27. Blue-eyed Spotted Cuscus (Spilocuscus wilsoni); 28. Common Spotted Cuscus (Spilocuscus maculatus); 29. Australian Spotted Cuscus (Spilocuscus nudicaudatus). in Phalangeridae
On following pages: 27. Blue-eyed Spotted Cuscus (Spilocuscus wilsoni); 28. Common Spotted Cuscus (Spilocuscus maculatus); 29. Australian Spotted Cuscus (Spilocuscus nudicaudatus).
On following pages: 60. Orinoco Four-eyed Opossum (Philander deltae); 61. Mcllhenny's Foureyed Opossum (Philander mcilhennyi); 62. Mondolfi's Foureyed Opossum (Philander mondolfii); 63. Olrog's Four-eyed Opossum in Didelphidae
On following pages: 60. Orinoco Four-eyed Opossum (Philander deltae); 61. Mcllhenny's Foureyed Opossum (Philander mcilhennyi); 62. Mondolfi's Foureyed Opossum (Philander mondolfii); 63. Olrog's Four-eyed Opossum
On following pages: 60. Orinoco Four-eyed Opossum (Philander deltae); 61. Mcllhenny's Foureyed Opossum (Philander mcilhennyi); 62. Mondolfi's Foureyed Opossum (Philander mondolfii); 63. Olrog's Four-eyed Opossum (Philander olrogi); 64. Gray Four-eyed Opossum (Philander opossum). in Didelphidae
On following pages: 60. Orinoco Four-eyed Opossum (Philander deltae); 61. Mcllhenny's Foureyed Opossum (Philander mcilhennyi); 62. Mondolfi's Foureyed Opossum (Philander mondolfii); 63. Olrog's Four-eyed Opossum (Philander olrogi); 64. Gray Four-eyed Opossum (Philander opossum).
ALRA-imputed E10 and E11 mouse embryonic eye region dbit-seq data from Liu et al., Cell 183.6 (2020): 1665-1681
<p>E10 and E11 mouse embryonic eye region dbit-seq data demonstrated in Liu, Yang, et al. “High-spatial-resolution multi-omics sequencing via deterministic barcoding in tissue.” Cell 183.6 (2020): 1665-1681. The data are processed using the original pipeline and then imputed by ALRA.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.