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Supplementary material 7 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Maximum Likelihood tree were inferred from the datasets COI + Cytb + 28S-D2 using IQ-tree
Fig 3 from: Srygley RB, Senior LB (2024) Illustrated review of Mormon cricket Anabrus simplex (Tettigoniidae, Tettigoniinae) embryonic development. Journal of Orthoptera Research 33(1): 87-93. https://doi.org/10.3897/jor.33.98763
Fig 3 Phase III: Mesentrepsis. Images left to right showing the posterior end of the egg: A. Stage 12; B. Stage 13; C. Stage 14; D. Lateral view of same stage 14 embryo. Scale bars: 2 mm.
Fig 2 from: Srygley RB, Senior LB (2024) Illustrated review of Mormon cricket Anabrus simplex (Tettigoniidae, Tettigoniinae) embryonic development. Journal of Orthoptera Research 33(1): 87-93. https://doi.org/10.3897/jor.33.98763
Fig 2 Phase II: Anatrepsis. Images show the posterior end of the egg: A. Stage 7 to 8; B. Stage 9; C. Stage 10; D. Stage 11 with micropyles clearly visible. Scale bars: 2 mm.
Supplementary material 4 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Summary of taxonomic groups used in Fig. 8
Fig 5 from: Srygley RB, Senior LB (2024) Illustrated review of Mormon cricket Anabrus simplex (Tettigoniidae, Tettigoniinae) embryonic development. Journal of Orthoptera Research 33(1): 87-93. https://doi.org/10.3897/jor.33.98763
Fig 5 Phase V: Dorsal closure A. Stage 19, ventral view; B. Stage 20, ventral view; C. Stage 21, lateral view; D. Stage 21 to 22, ventral view; Phase VI: Completion E. Stage 23, ventral view; F. Stage 23, lateral view; G. Stage 24, ventral view. Scale bars: 2 mm.
Supplementary material 6 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Predicted folding pattern for tRNAs of Synergus nanlingensis mitochondrial genome
Fig 1 from: Srygley RB, Senior LB (2024) Illustrated review of Mormon cricket Anabrus simplex (Tettigoniidae, Tettigoniinae) embryonic development. Journal of Orthoptera Research 33(1): 87-93. https://doi.org/10.3897/jor.33.98763
Fig 1 Phase I: Formation and differentiation of the embryonic primordium. Images show the posterior end of the egg only: A. Stage 4; B. Stage 5; C. Stage 6; and D. Stage 6 transitioning to Stage 7. Scale bars: 2 mm.
Fig 6 from: Srygley RB, Senior LB (2024) Illustrated review of Mormon cricket Anabrus simplex (Tettigoniidae, Tettigoniinae) embryonic development. Journal of Orthoptera Research 33(1): 87-93. https://doi.org/10.3897/jor.33.98763
Fig 6 The minimum age of each embryo from day of oviposition (maximum age indicated by error bar). Embryos that were between two stages (e.g., Stage 6 to 7) were given a value half-way between the two stages (e.g., 6.5). Closed circles: embryos incubated at a daily 12:12 h cycle of 30:15°C; open circles: embryos incubated at 30:15°C for the initial 35 days and then the daily maximum and minimum temperatures were varied each week thereafter. Inset: embryos in various stages of development in week 8.
Figure 8 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 8 Bayesian analysis of the MAFFT alignment data set inferred from the COI + Cytb + 28S-D2 data sets. Posterior probabilities are shown at each node.
Fig 4 from: Srygley RB, Senior LB (2024) Illustrated review of Mormon cricket Anabrus simplex (Tettigoniidae, Tettigoniinae) embryonic development. Journal of Orthoptera Research 33(1): 87-93. https://doi.org/10.3897/jor.33.98763
Fig 4 Phase IV: Katatrepsis. A. Stage 15, lateral view with anterior end of embryo to the left; B. Stage 15, dorso-lateral view with chorion removed; C. Stage 16, lateral view with anterior end of embryo to the right; D. Stage 17, lateral view; E. Stage 18, ventral view showing its length relative to the whole egg. Scale bars: 2 mm.
Figure 6 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 6 Structures of control regions in the mitogenome of Synergus nanlingensis Wang & Zeng, 2023, sp. nov. Abbreviation: NTR, nontandem repeat. Yellow shows A + T-rich regions.
Figure 4 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 4 Mitochondrial genome of Synergus nanlingensis Wang & Zeng, 2023, sp. nov. sequenced in this study. Genes outside the circle are encoded by the majority strand, and genes inside are encoded by the minority strand. The tRNA genes are indicated by their one-letter corresponding amino acids. The GC content is plotted using a black sliding window. Abbreviations: atp6 and atp8, ATP-synthase subunits 6 and 8; cob, cytochrome b; cox1–3, cytochrome oxidase subunits 1–3; nad1–6 and nad4L, NADH dehydrogenase subunits 1–6 and 4 L; rrnL and rrnS, large and small rRNA subunits.
Figure 7 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 7 Mitochondrial genome organization and gene rearrangement in Synergus nanlingensis Wang & Zeng, 2023, sp. nov. compared with the ancestral type of the insect mitochondrial genome. All abbreviations are the same as in Table 1 in the main text. Arrow pointing to the right represents the J-strand and arrow pointing to the left represents the N-strand. Genes are drawn in their original order; intergenic distances are not included, and sizes of genes are not to scale. Yellow boxes indicate genes with different positions from two control regions reported in Cynipidae. and white boxes indicate genes that are different in terms of both position and strand associations from the putative ancestral pattern. Gray boxes show conserved gene blocks.
Figure 5 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 5 Relative synonymous codon usage (RSCU) of Synergus nanlingensis Wang & Zeng, 2023, sp. nov. mitochondrial genome. Codon families are labeled on the x-axis. Values on the top of the bars indicate the percentage of each amino acid used for the construction of 13 protein-coding genes (PCGs).
Supplementary material 5 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Pair-wise COI sequence distances in Synergus
Supplementary material 2 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
List of PCR primers used in this study
Figure 1 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 1 Synergus nanlingensis Wang & Zeng, 2023, sp. nov. a general habitus (♀) b general habitus (♂) c antenna (♀) d antenna (♂) e head in anterior view (♀) f head in anterior view (♂) g head in dorsal view (♀) h head in dorsal view (♂).
Figure 2 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 2 Synergus nanlingensis Wang & Zeng, 2023, sp. nov. a head in lateral view (♀) b fore wing (♀) c head in posterior view (♀) d mesosoma, lateral view (♀) e mesosoma, dorsal view (♀) f propodeum, dorsal view (♀) g metasoma, lateral view (♀) h metasoma, lateral view (♂) i tarsal claw.
Fig 4 from: Silva HM, Avivar-Lozano L, Gomes G, Rhee H, Dellinger T, Aguín-Pombo D (2024) New records of Oecanthus species (Orthoptera, Oecanthidae) in the Madeira archipelago. Journal of Orthoptera Research 33(1): 95-102. https://doi.org/10.3897/jor.33.113947
Fig 4 Habitats of Oecanthus dulcisonans in Madeira and Porto Santo: A. Campo de Baixo, Porto Santo Island. Photo: Tomé Freitas; B. Reis Magos, Caniço, Madeira Island. Photo: Hugo Silva.
Fig 3 from: Silva HM, Avivar-Lozano L, Gomes G, Rhee H, Dellinger T, Aguín-Pombo D (2024) New records of Oecanthus species (Orthoptera, Oecanthidae) in the Madeira archipelago. Journal of Orthoptera Research 33(1): 95-102. https://doi.org/10.3897/jor.33.113947
Fig 3 Photos of Oecanthus dulcisonans stridulating (A) and standing (B) on Hyparrhenia hirta E. Fourn at Ponta de São Lourenço, Machico, Madeira Island on June 17, 2023. Photos: Howon Rhee. Oscillograms of songs of O. dulcisonans recorded at 23°C in Porto Santo Island (C) and Oecanthus pellucens recorded at 22.5°C in a laboratory with an individual from Spain by Klaus-Gerhard Heller (D), from the Orthoptera Species Files Online (Cigliano et al. 2023).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.