Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
1,007
datasets available to search
ShareScore release 0.9.0
Dataset results
1,007 results for “single use”
Using next-generation sequencing to measure the histone protein H2B and monoubiquitinated H2B (H2Bub) in single yeast cells
GEO Series GSE153605. Saccharomyces cerevisiae. 4 samples. Type: Other.
Sensitive dissection of a genomic regulatory landscape using bulk and targeted single-cell activation [ATAC-seq]
GEO Series GSE274254. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Improving stem cell-derived pancreatic islets using single-cell multiome-inferred regulomes [Adult-snRNA-seq]
GEO Series GSE202491. Homo sapiens. 7 samples. Type: Expression profiling by high throughput sequencing.
Integrative analysis of single-cell ATAC-seq and RNA-seq using Self-Organizing Maps
GEO Series GSE89285. Mus musculus. 833 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single nuclei transcriptomics of human and monkey striatum implicates DNA damage, neuroinflammation, and neurodegeneration signaling in opioid use disorder
GEO Series GSE233279. Homo sapiens; Macaca mulatta. 40 samples. Type: Expression profiling by high throughput sequencing.
Mapping karyotypic heterogeneity in chromosomal instable murine T-cell acute lymphoblastic lymphomas using single-cell sequencing
GEO Series GSE63688. Mus musculus. 144 samples. Type: Other.
Single nucleus RNA-seq gene expression profiling for protein coding and lncRNA genes using livers of male and female mice, with GH infusion, and following TCPOBOP exposure
GEO Series GSE188488. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
spKAS-seq reveals R-loop dynamics using low-input materials by detecting single-stranded DNA with strand specificity
GEO Series GSE192822. Homo sapiens. 46 samples. Type: Other.
Dissecting the fate of Foxl2-expressing cells in ovary development using lineage tracing and Single-Cell Transcriptomics
GEO Series GSE163879. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Integrated Single-Cell Multiomic Profiling of Caudate Nucleus Suggests Key Mechanisms in Alcohol Use Disorder
GEO Series GSE277313. Homo sapiens. 485 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Characterisation of CD4+ T-cell subtypes using single cell RNA sequencing and the impact of cell number and sequencing depth
GEO Series GSE147928. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Sensitive dissection of a genomic regulatory landscape using bulk and targeted single-cell activation [Chromatin RNA-seq]
GEO Series GSE274258. Homo sapiens. 2 samples. Type: Other.
Genome-wide mapping of DNA supercoils, single-stranded DNA, and Z DNA in C. elegans using new high-throughput methods reveals the delineation of DNA structure by DNA sequence (SS-Seq)
GEO Series GSE153372. Caenorhabditis elegans. 7 samples. Type: Other.
Improving stem cell-derived pancreatic islets using single-cell multiome-inferred regulomes [Childhool snRNA-seq]
GEO Series GSE202496. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Characterizing control of memory CD8 T cell differentiation by BTB-ZF transcription factor Zbtb20 using single cell RNA-sequencing (CUT&RUN)
GEO Series GSE234573. Mus musculus; Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Characterization of RPE subpopulation gene expression and cell surface protein composition using single cell sequencing
GEO Series GSE244572. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing; Other.
Characterizing Near-surface Moisture Increase During the Afternoon-to-Evening Transition Using a Single Column Model
<p>Simulated results from the single column model that used in the manuscript.</p>
Figure 4 in Integrative taxonomy using historical specimens provides evidence for a single species of bushbuck, Tragelaphus scriptus (Mammalia: Bovidae)
Figure 4. Maximum likelihood phylogeny of all sequenced bushbuck specimens with other tragelaphines. Node numbers indicate approximate likelihood ratio test (aLRT) support values; only nodes with> 95% support are shown. Nodes with <80% support were collapsed. Numbers refer to specimens in Table 1 or GenBank reference specimens in Table 2. Dots are coloured by country and correspond to those in Figure 7.
Interactive design and validation of antibody panels using single-cell RNA-seq atlases
Open the record for dataset details and reuse information.
Decibel/Regeneron Single-Trial ABR Waveforms used in ABRpresto
<p>This is a dataset of single-trial ABR data with ABR thresholds judged by expert human raters. It was used to test the <a href="https://github.com/Regeneron-RGM/ABRpresto/">ABRpresto algorithm</a>, which is reported <a href="https://www.biorxiv.org/content/10.1101/2024.10.31.621303v2">here</a> and in submission. It contains a total of 7,857 ABR waveform stacks from 351 mice. It includes mice with normal hearing and hearing loss from multiple strains and genotypes, totaling 123,140 unique ABR waveforms.</p> <p>The data is in psi format, example code in the <a href="https://github.com/Regeneron-RGM/ABRpresto/blob/main/scripts/Example_convert_psi_to_csv.py">ABRpresto github</a> illustrates how to convert it to csv if desired. It also includes two csv files:</p> <ul> <li>"ABRpresto thresholds 10-29-24.csv" contains the resulting thresholds generated by running the dataset through the ABRpresto algorithm.</li> <li>"Manual Thresholds.csv" contains the thresholds picked by expert human raters using an interactive GUI similar to that available <a href="https://github.com/bburan/abr">here</a>. It also contains min_level and max_level columns that describe the minimum and maximum levels tested for each dataset.</li> </ul> <p> See <a href="https://github.com/Regeneron-RGM/ABRpresto/blob/main/scripts/Example_plot_performance.py">Example_plot_performance.py </a>for an example of how to use these files to plot algorithm performance.</p> <p>Data were collected using a customized version of Psiexperiment, a plugin-based framework for auditory experiments (Buran and David, 2020, https://zenodo.org/records/3661386). Five-millisecond tone-pips with a 0.5 ms rise-fall time delivered at 81/s in alternating polarity were used for frequency-specific measurements of hearing function. Sound levels were tested in 5 dB steps, at either a 15–105 dB, 15–85dB, or 65–105 dB sound pressure level (SPL) range. Stimulus frequencies ranged from 4 to 45.3 kHz in half-octave steps. Stimuli were presented in interleaved order such that a train of tone-pips containing a single presentation of each level and frequency was repeated in an interleaved ramp paradigm (as described in Buran et al. 2020). Electrical signals were recorded through a digitizing amplifier (TDT RA4PA or Medusa4Z). Responses from 512 repetitions were recorded, and individual response to each trial and averaged responses were stored for further analysis. All experiments were approved by the Animal Care and Use Committee of Decibel Therapeutics.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.