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1,709 results for “Reflectivity”
Data from: Low genetic diversity but strong population structure reflects multiple introductions of western flower thrips (Thysanoptera: Thripidae) into China followed by human-mediated spread
Historical invasion scenarios based on observational records are usually incomplete and biased, but these can be supplemented by population genetic data. The western flower thrips (WFT), Frankliniella occidentalis, invaded China in the last 13 years and has rapidly become one of the most serious pests in the country. To assess whether this invasion involved a single event or multiple events, we examined patterns of genetic diversity and population structure of WFT across 12 Chinese populations and a native US population based on mitochondrial DNA and/or 18 microsatellite loci. The average allelic richness and haplotype diversity in Chinese populations were significantly lower than in a population from its native range. The distribution of mitochondrial haplotypes suggested multiple independent invasions of WFT into China, including two invasions into the Beijing region. Based on microsatellite data, two distinct clusters were identified, with both of them splitting further into two clusters; in the Beijing region, the microsatellite data also provided evidence for two introductions. Both the absence of isolation by distance and the fact that distant populations were similar genetically suggest patterns of WFT movement linked to human activities. Our study therefore suggests multiple introductions of WFT into China and human-assisted spread.
Data from: Image Calibration and Analysis Toolbox – a free software suite for measuring reflectance, colour, and pattern objectively and to animal vision
1. Quantitative measurements of colour, pattern, and morphology are vital to a growing range of disciplines. Digital cameras are readily available and already widely used for making these measurements, having numerous advantages over other techniques, such as spectrometry. However, off-the-shelf consumer cameras are designed to produce images for human viewing, meaning that their uncalibrated photographs cannot be used for making reliable, quantitative measurements. Many studies still fail to appreciate this, and of those scientists who are aware of such issues, many are hindered by a lack usable tools for making objective measurements from photographs. 2. We have developed an image processing toolbox that generates images that are linear with respect to radiance from the RAW files of numerous camera brands, and can combine image channels from multispectral cameras, including additional ultraviolet photographs. Images are then normalised using one or more grey standards to control for lighting conditions. This enables objective measures of reflectance and colour using a wide range of consumer cameras. Furthermore, if the camera's spectral sensitivities are known, the software can convert images to correspond to the visual system (cone-catch values) of a wide range of animals, enabling human and non-human visual systems to be modelled. The toolbox also provides image analysis tools that can extract luminance (lightness), colour, and pattern information. Furthermore, all processing is performed on 32-bit floating point images rather than commonly used 8-bit images. This increases precision and reduces the likelihood of data loss through rounding error or saturation of pixels, while also facilitating the measurement of objects with shiny or fluorescent properties. 3. All cameras tested using this software were found to demonstrate a linear response within each image and across a range of exposure times. Cone-catch mapping functions were highly robust, converting images to several animal visual systems and yielding data that agreed closely with spectrometer-based estimates. 4. Our imaging toolbox is freely available as an addition to the open source ImageJ software. We believe that it will considerably enhance the appropriate use of digital cameras across multiple areas of biology, in particular researchers aiming to quantify animal and plant visual signals.
Data from: The influence of geomorphic processes on plant distribution and abundance as reflected in plant tolerance curves
Ecologists describe plant distribution using direct gradient analysis, by which a tolerance curve of species abundance is described along an environmental gradient (any environmental variable that affects plant distribution). Soil moisture is generally the gradient in low relief areas that explains the most variation. Traditional direct gradient analyses have used terrain structure (i.e. transects up or down hillslopes) as a correlate to soil moisture. Here we use a numerical tectonic and geomorphic process-based landscape development model to create two landscapes with different geomorphic characteristics (i) to demonstrate the influence of geomorphic processes on soil moisture patterns and plant distribution and (ii) to evaluate the effectiveness of transects in describing moisture gradients and tolerance curves on landscapes dominated by creep or overland flow. We use a topographic index to approximate the distribution of soil moisture as it is determined by the shape of these different landscapes. Transects are placed on hillslopes in each model landscape and used to construct tolerance curves. Results show that transect methods that use the distance from the channel to the ridgeline as an approximation of soil moisture create variable tolerance curves for the same plant both within a single landscape and between different landscapes. The reason for these differences is that transects do not take into account the 3-dimensional landscape form that explains water movement. Landscapes have regions of convexity and flow path divergence and regions of concavity and flow path convergence which, along with hillslope length, determine contributing area. In addition, hillslope curvature results in varying capacities to retain water. However, when the topographic index is used instead of hillslope transect position, tolerance curves from the same and different landscapes reflect the differences the topographic structure has on soil moisture. We thus show that traditional methods of direct gradient analysis are not always adequate as they do not tend to consider that soil moisture depends on hillslope length, curvature, and slope. Furthermore, we show that within and between landscapes there are differences in spatial distributions of soil moisture that are reflections of the geomorphic processes that created them.
Data from: Does reproductive isolation reflect the segregation of color forms in Spiranthes sinensis (Pers.) Ames complex (Orchidaceae) in the Chinese Himalayas?
Isolation between species, or taxa sharing a common lineage, depends primarily on the relative strengths of various reproductive barriers. Previous studies on reproductive isolation between orchids emphasized mechanical and ethological barriers in flowers of species showing food and/or sexual mimicry. In this study, we investigated and quantified a series of pre- and post-pollination barriers between pink and white forms of Spiranthes sinensis sl, a nectar-secreting complex. We generated ML trees based on trnS-G and matK to explore phylogenetic relationships in this species complex. Spiranthes sinensis sl segregated from some other congeners but the white form constituted a distinct clade in relation to the pink form. The white form secreted 2-Phenylethanol as its single scent compound and was pollinated almost exclusively by native, large-bodied Apis cerana and Bombus species (Apidae). Apis cerana showed a high floral constancy to this form. The scentless, pink form was pollinated primarily by smaller bees in the genera Ceratina (Apidae), and members of the family Halictidae, with infrequent visits by A. cerana and Bombus species. Fruit set and the production of large embryos following inter-form pollination treatments were significantly lower compared to intra-form pollination results for the white form. Our results suggested that pollinator isolation, based on color and scent cues, may result in greater floral constancy in white populations when both forms are sympatric as two different, guilds of pollinators forage selectively preventing or reducing prospective gene flow. Post-pollination barriers appear weaker than pre-pollination barriers but they also play a role in inter-form isolation, especially in the white form. Our findings suggest that floral color forms in S. sinensis do not represent an unbalanced polymorphism. Interpretations of the evolutionary status of these forms are discussed.
Data from: Seawater environmental DNA reflects seasonality of a coastal fish community
Coastal marine fish populations are in decline due to overfishing, habitat destruction, climate change and invasive species. Seasonal monitoring is important for detecting temporal changes in the composition of fish communities, but current monitoring is often non-existent or limited to annual or semi-annual surveys. In the present study, we investigate the potential of using environmental DNA (eDNA) metabarcoding of seawater samples to detect the seasonal changes in a coastal marine fish community. Water sampling and snorkelling visual census were performed over 1 year (from 23rd of August 2013 to 11th of August 2014) at a temperate coastal habitat in Denmark (55°45′39″N, 12°35′59″E) and compared to long-term data collected over a 7-year period. We used Illumina sequencing of PCR products to demonstrate that seawater eDNA showed compositional changes in accordance with seasonal changes in the fish community. The vast majority of fish diversity observed in the study area by snorkelling was recovered from sequencing, although the overlap between methods varied widely among sampling events. In total, 24 taxa were detected by both methods, while five taxa were only detected using eDNA and three taxa were only detected by snorkelling. A limitation of the applied primers was the lack of resolution to species level in a few diverse families, and varying sequencing depth between samples represents a potential bias. However, our study demonstrates the utility of eDNA for recovering seasonal variation in marine fish communities, knowledge of which is essential for standardised long-term monitoring of marine biodiversity.
Data from: Behavioural and physiological responses to prey-related cues reflect higher competitiveness of invasive vs. native ladybirds
Understanding the traits that might be linked with biological invasions represents a great challenge for preventing non-target effects on local biodiversity. In predatory insects, the ability to exploit habitats for oviposition and the physiological response to prey availability differs between species. Those species that respond more readily to environmental changes may confer to their offspring a competitive advantage over other species. Here, we tested the hypothesis that the invasive Harmonia axyridis (Coleoptera: Coccinellidae) makes better use of information from a plant-prey (Vicia faba - Aphis fabae) system compared to the native Oenopia conglobata. Y-tube olfactometer bioassays revealed that both species used olfactory cues from the system, but H. axyridis exhibited a more complete response. This species was also attracted by plants previously infested by aphids, indicating the capacity to exploit volatile synomones induced in plants by aphid attack. Oocyte resorption was investigated when different olfactory stimuli were provided under prey shortage and the readiness of new oogenesis was measured when prey was available again. H. axyridis exhibited higher plasticity in oogenesis related to the presence/absence of plant-aphid volatiles. Our results support the hypothesis that H. axyridis is more reactive than O. conglobata to olfactory cues from the plant-prey system.
Data from: Eggshell coloration reflects both yolk characteristics and dietary carotenoid history of female mallards
1. Avian eggshell coloration has frequently been examined in a functional context (e.g. mimicry, camouflage), but in recent years, an interest has emerged in identifying the mechanisms that drive eggshell colour variation. 2. Eggshell coloration is predominately caused by pigment deposition; one such pigment is the antioxidant biliverdin, and deposition of biliverdin into eggshells may be costly to mothers due to depletion of their antioxidant reserves. Previous work has shown that dietary supplementation during laying with another type of antioxidant – carotenoid pigments – induces females to produce more biliverdin-rich eggshells. However, the impact of pre-laying nutrition – including the developmental period early in life – on eggshell coloration has not been investigated. 3. Here, we raised female mallards (Anas platyrhynchos) from hatching, supplemented their diets with carotenoids during early-, mid- or late-developmental periods, and at adulthood measured female circulating carotenoid levels, yolk carotenoid levels, and eggshell coloration. We found that carotenoid supplementation during the late stages of development (transitional period from juvenile to adult plumage) promoted the laying of eggs with more biliverdin-rich eggshells. Independent of developmental dietary treatment, females with higher circulating carotenoid levels at the time of egg laying produced more biliverdin-rich eggshells and more carotenoid-rich yolks. When controlling for female identity, we found that more biliverdin-rich eggshells were associated with more carotenoid-rich, but smaller, yolks. We also detected a laying order effect; later-laid eggs had larger, less carotenoid-rich yolks and less biliverdin-rich eggshells. 4. Taken together, these results demonstrate that eggshell coloration reveals carotenoid status of both mothers and yolks and that diet quality more than 1 month prior to laying can affect eggshell coloration in a waterfowl species. As mallards are considered to be capital breeders in terms of lipid stores, our findings provide a new developmental perspective on the carryover of lipid-soluble and antioxidant nutrient reserves for breeding.
Data from: Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load
Mutations are the ultimate source of heritable variation for evolution. Understanding how mutation rates themselves evolve is thus essential for quantitatively understanding many evolutionary processes. According to theory, mutation rates should be minimized for well-adapted populations living in stable environments, whereas hypermutators may evolve if conditions change. However, the long-term fate of hypermutators is unknown. Using a phylogenomic approach, we found that an adapting Escherichia coli population that first evolved a mutT hypermutator phenotype was later invaded by two independent lineages with mutY mutations that reduced genome-wide mutation rates. Applying neutral theory to synonymous substitutions, we dated the emergence of these mutations and inferred that the mutT mutation increased the point-mutation rate by ~150-fold, while the mutY mutations reduced the rate by ~40-60%, with a corresponding decrease in the genetic load. Thus, the long-term fate of the hypermutators was governed by the selective advantage arising from a reduced mutation rate as the potential for further adaptation declined.
Data from: Automated segmentation of skin strata in reflectance confocal microscopy depth stacks
Reflectance confocal microscopy (RCM) is a powerful tool for in-vivo examination of a variety of skin diseases. However, current use of RCM depends on qualitative examination by a human expert to look for specific features in the different strata of the skin. Developing approaches to quantify features in RCM imagery requires an automated understanding of what anatomical strata is present in a given en-face section. This work presents an automated approach using a bag of features approach to represent en-face sections and a logistic regression classifier to classify sections into one of four classes (stratum corneum, viable epidermis, dermal-epidermal junction and papillary dermis). This approach was developed and tested using a dataset of 308 depth stacks from 54 volunteers in two age groups (20–30 and 50–70 years of age). The classification accuracy on the test set was 85.6%. The mean absolute error in determining the interface depth for each of the stratum corneum/viable epidermis, viable epidermis/dermal-epidermal junction and dermal-epidermal junction/papillary dermis interfaces were 3.1 μm, 6.0 μm and 5.5 μm respectively. The probabilities predicted by the classifier in the test set showed that the classifier learned an effective model of the anatomy of human skin.
Data from: Compromised external validity: federally produced cannabis does not reflect legal markets
As the most widely used illicit drug worldwide, and as a source of numerous under-studied pharmacologically-active compounds, a precise understanding of variability in psychological and physiological effects of Cannabis varieties is essential. The National Institute on Drug Abuse (NIDA) is designated as the sole legal producer of Cannabis for use in US research studies. We sought to compare the chemical profiles of Cannabis varieties that are available to consumers in states that have state-legalized use versus what is available to researchers interested in studying the plant and its effects. Our results demonstrate that the federally-produced Cannabis has significantly less variety and lower concentrations of cannabinoids than are observed in state-legal U.S. dispensaries. Most dramatically, NIDA's varieties contain only 27% of the THC levels and as much as 11–23 times the Cannabinol (CBN) content compared to what is available in the state-legal markets. Research restricted to using the current range of federally-produced Cannabis thus may yield limited insights into the chemical, biological and pharmacological properties, and medical potential of material that is available in the state markets. Investigation is urgently needed on the full diversity of Cannabis chemotypes known to be available to the public.
Data from: Vis/NIR reflectance spectroscopy for hybrid rice variety identification and chlorophyll content evaluation for different nitrogen fertilizer levels
Nitrogen is one of the most important nutrient indicator for the growth of crops, which is closely related to chlorophyll content of leaves and thus influences the photosynthetic ability of crops. In this study, visible and near infrared (vis/NIR) reflectance spectroscopy combined with multi-variate analysis was used to identify hybrid rice varieties and nitrogen fertilizer levels, as well as to detect chlorophyll content associated with nitrogen levels. The support vector machine (SVM) algorithm was applied to identify five varieties of hybrid rice and six levels of nitrogen fertilizer. The results demonstrated that different varieties of hybrid rice for each nitrogen level can be well distinguished except for the highest nitrogen level, and no nitrogen level for each rice variety can be completely identified from the other five nitrogen levels. Further, several spectral indices combined with partial least squares (PLS) analysis were applied for estimating chlorophyll content of rice leaves from plants subject to different nitrogen levels, and a coefficient of determination (R2) of 97.8% and a ratio of performance to deviation (RPD) of 4.6 for all rice varieties indicated this as a preferable procedure. Experimental results demonstrated that vis/NIR spectroscopy can have a great potential for identification of rice varieties and evaluation of nitrogen fertilizer levels.
Data from: Data-driven mathematical model of East-Asian facial attractiveness: the relative contributions of shape and reflectance to attractiveness judgements
Facial attractiveness is judged through a combination of multiple cues including morphology (facial shape) and skin properties (facial reflectance). While several studies have examined the way in which people in Western cultures judge facial attractiveness, there have been fewer investigations into non-Western attitudes. This is because stimuli that quantitatively vary the attractiveness of non-Western faces are rare. In the present study, we built a model of the attractiveness of East-Asian faces, judged by East-Asian observers. Therefore, 400 computer-generated East-Asian faces were created and attractiveness rating scores were collected from Japanese observers. Data-driven mathematical calculations were used to identify quantitative links between facial attractiveness and shape and reflectance properties, with no prior hypothesis. Results indicate that faces with larger eyes, smaller noses, and brighter skin are judged as more attractive, regardless of the sex of the faces, possibly reflecting a general preference for femininity. Shape is shown to be a strong determinant of attractiveness for both male and female faces, while reflectance properties are less important in judging male facial attractiveness. Our model provides a tool to effectively produce East-Asian face stimuli that quantitatively varies attractiveness and can be used to elucidate visual processes related to attractiveness judgment.
Data from: Multimodal signals: ultraviolet reflectance and chemical cues in stomatopod agonistic encounters
Complex signals are commonly used during intraspecific contests over resources to assess an opponent's fighting ability and/or aggressive state. Stomatopod crustaceans may use complex signals when competing aggressively for refuges. Before physical attacks, stomatopods assess their opponents using chemical cues and perform threat displays showing a coloured patch, the meral spot. In some species, this spot reflects UV. However, despite their complex visual system with up to 20 photoreceptor classes, we do not know if stomatopods use chromatic or achromatic signals in contests. In a field study, we found that Neogonodactylus oerstedii meral spot luminance varies with sex, habitat and, more weakly, body length. Next, we conducted an experimental manipulation which demonstrated that both chemical cues and chromatic signals are used during contests. In the absence of chemical cues, stomatopods approached an occupied refuge more quickly and performed offensive behaviours at a lower rate. When UV reflectance was absent, stomatopods performed offensive behaviours more frequently and contest duration trended towards shorter fights. These results provide new evidence that UV reflectance and/or visible spectrum luminance is used to amplify threat displays. Our results are the first to demonstrate that chemical and chromatic cues comprise a multimodal signal in stomatopod contests.
Data from: No evidence that plant-soil feedback effects of native and invasive plant species under greenhouse conditions are reflected in the field
Plant–soil feedback (PSF) may affect above-ground higher trophic levels in glasshouse experiments, but evidence from field studies on the relevance of these multitrophic interactions for plant performance is lacking. Therefore, we examined whether PSF effects of several native and invasive plant species occur also in the field and influence plant damage by above-ground herbivores. Root zone soil from an abandoned urban field was used as inocula for the PSF experiment. First, we grew eight urban grassland plant species (five natives and three invasive species) separately in a glasshouse, with soil biota communities conditioned by the respective species itself ('home soil') or by a mixture of all other species ('foreign soil'). After 13 weeks, one cohort of the plants was placed on an urban field in Berlin to assess damage by naturally colonizing herbivores, while another cohort of the plants stayed in the glasshouse. We observed that the extent of the PSF effects differed between the field and glasshouse cohorts of plants. While we found positive PSF responses for five of the eight plant species in the glasshouse, we found no PSF effects in the field. Further, there was no trend that invasive or native species differed in the direction or extent of PSF responses. Concerning the leaf damage by herbivores of the field plants, we found no evidence that the soil history (home vs. foreign soil) affected the effects of above-ground herbivores on the plants. Synthesis. We conclude that PSF effects are more likely to be found under glasshouse conditions. In the field, PSFs seem to play a minor role for the selected urban grassland species. More generally, our study highlights the need to focus on PSFs under natural conditions and in natural communities (including higher trophic levels), which is often overlooked in PSF research.
Data from: Does morphology reflect osteohistology-based ontogeny? A case study of Late Cretaceous pterosaur jaw symphyses from Hungary reveals hidden taxonomic diversity
With a single complete mandible and 56 mandibular symphyseal fragments of various sizes, the Late Cretaceous Hungarian azhdarchid material has been considered one of the most extensive monospecific pterosaur assemblages in the world. Representing a broad size range, these elements have been thought to demonstrate a developmental series of Bakonydraco galaczi. As such, they were ideal to test whether absolute size and/or morphology reliably indicate relative ontogenetic stages in this pterosaur. Forty-five specimens were selected for multivariate morphometrics and classified into four size classes. After acquiring the morphometric data set, we thin-sectioned eight symphyses representing all size groups and classified them into relative ontogenetic stages based on qualitative microstructural inspection prior to quantitative histological analyses. Microstructural characters suggestive of developmental state were then quantified for intra- and interindividual uni- and multivariate analyses to test the correspondence among the results of qualitative and quantitative analyses. In contrast to our expectations, histological features identified the smallest specimen as an adult and not an early juvenile. The substantial size difference between this specimen and other adults, along with its distinct microanatomical and histological features, implies the presence of at least two pterosaur taxa in this symphysis assemblage. This hypothesis is further supported by multivariate morphometrics, which separate the smallest symphyses from all other specimens that form one continuous group. Although the latter group also shows considerable size variability in corresponding ontogenetic stages, this suggests developmental plasticity rather than the presence of even more taxa, and indicates that symphysis size and morphology are poor indicators of skeletal maturity in these animals. Hence, bone histology is an important independent test of the assessment of ontogenetic stage using size and morphology.
LACUNAES AND NON-EQUIVALENT VOCABULARY AS A REFLECTION OF LINGUISTIC CULTURE
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LINGUISTIC FACTORS AND THEIR REFLECTION IN TRANSLATION IN PHRASEOLOGISTS WITH SOCIO-PROFESSIONAL NOMINAL COMPONENTS IN ENGLISH AND UZBEKI
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REFLECTION OF CONNOTATION IN UZBEK LANGUAGE PHRASES.
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F I G U R E 1 in Phylogeography of Solomon Islands blossom bats reflects oceanic divides and Pleistocene connections
F I G U R E 1 Study area and taxa: (a) the Solomon Islands and Bismarck archipelagos (EPSG: 4326 – WGS 84) with distributions of species M. melanops (orange), Nesonycteris woodfordi (green) and N. fardoulisi (blue), and subspecies (labelled). Bathymetric depths less than 120 m in Solomon Islands (ETOPO1, Amante & Eakins, 2009) shaded in dark grey indicate possible land bridge connections during the Last Glacial Maximum. Putative Pleistocene land bridge configurations suggested by ETOPO1 data (Amante & Eakins, 2009) are presented as grey shading for (a) the Solomon Islands archipelago, with members of landmass termed 'Greater Bukida' indicated in green; (b) the New Georgia group of islands and (c) the islands of Santa Isabel, Ngella and Guadalcanal. Putative Pleistocene land bridge configurations prepared by Mayr and Diamond (2001) are indicated by black solid outlines.
Supporting information of the article: Stretchable reflective coating for soft optical waveguides and sensors
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