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1,773 results for “Supplementary data,”
Supplementary Data: Industrial sector pathways to a well-below 2ºC world: a global integrated assessment perspective
<p>Supplementary Material for the study titled<em> Industrial sector pathways to a well-below 2ºC world: a global integrated assessment perspective</em>. <em> </em></p>
Supplementary data: Optimising centralisation and decentralisation in distribution networks for perishable products through mathematical modelling, parametric analysis, and machine learning
<p><span>The success of distribution companies for perishable products is enabled by optimally configuring distribution networks, which allows for reducing total logistic costs while ensuring reduced product spoilage and high service levels. Since customer demand for perishable products varies over time, the network configuration should not be optimised once, but periodically reviewed. Among the decisions to be reviewed, determining whether to centralise or decentralise inventory (i.e., stock allocation in distribution centres) is crucial. However, the literature overlooks stock allocation decisions, and existing methodologies to compare the economic performance of centralised, decentralised, and hybrid policies neglect important cost items, also requiring advanced computational technologies and skills to be applied. This paper addresses these gaps by providing two contributions. In this dataset, a comparison has been made between the cost performance of centralized, decentralized, and hybrid stock allocation policies in distribution networks for perishable products. The dataset comprises 100,000 realistic case studies generated through a Sobol quasi-random low discrepancy series.</span></p>
Supplementary data for "Quantifying the Impact Factors of Landslide Dam Breaching: A Numerical Study on the Influence of Lake Geometry and Upstream Inflow"
<p>The supplementary data provides a summary of previously published data and natural case studies related to landslide dam breaching, which were utilized in the study titled <em>"Quantifying the Impact Factors of Landslide Dam Breaching: A Numerical Study on the Influence of Lake Geometry and Upstream Inflow."</em></p>
PhD thesis Gijs Selten - Supplementary data
<p>This repository contains the Supplementary data of the experimental chapters published in the PhD thesis of Gijs Selten MSc. </p> <p>Chapter 2 - Functional capacities drive recruitment of bacteria into plant root (already online on bioRxiv --> https://www.biorxiv.org/content/10.1101/2024.08.22.609090v1.article-info)</p> <ul> <li>Supplementary data</li> <li>Supplementary tables</li> </ul> <p>Chapter 3 - Key genetic components for bacterial success in complex communities revealed using comparative metagenome analysis</p> <ul> <li>Supplementary data</li> <li>Orthogroup profiles of SynCom members</li> <li>Figures S7 and S9 (close-up) </li> </ul> <p>Chapter 4 - <em>SyFi</em>: generating and using sequence fingerprints to distinguish SynCom isolates</p> <ul> <li>SyFi bash script</li> <li>Supplementary data: <ul> <li>Microbiome tables - SyFi (minscorefraction 65, 75, 85, 95 (original), and 100%), Salmon directly on amplicons, Qiime2-VSEARCH (95, 97, 98, 99, 100% match), shotgun metagenomics table</li> <li>Percentages mapped reads</li> <li>16S copy number</li> <li>VSEARCH clustering results</li> </ul> </li> <li>16S fingerprints</li> <li>16S V3V4 fingerprints</li> <li>16S V5V7 fingerprints</li> <li>16S original sequences</li> <li>16S V3V4 original sequences</li> <li>16S V5V7 original sequences</li> </ul> <p>Chapter 5 - <em>Bacillus</em>: driver of distinct functional states in plant root bacterial synthetic communities </p> <ul> <li>Supplementary data</li> <li>Supplementary tables</li> <li>Jaccard Distance matrix on isolate composition</li> <li>Jaccard Distance matrix on genus composition</li> <li>Jaccard Distance matrix on KO composition</li> <li>Bray Curtis Distance matrix on isolate composition</li> <li>Bray Curtis Distance matrix on genus composition</li> <li>Bray Curtis Distance matrix on KO composition</li> </ul>
Supplementary data for 'An extreme mutational hotspot in nlpD depends on transcriptional induction of rpoS'
<p>This zip file contains raw data and calculations for each figure of the manuscript "An extreme mutational hotspot in <em>nlpD </em>depends on transcriptional induction of <em>rpoS</em>". Please refer to the README tab of each excel file, or the README txt files in each folder, for a description of each set of data. </p>
Supplementary Data for Crelier et al. (2025) entitled "Mobility of South America's Transcontinental Drainage Divide and Shrinkage of the Paraná River Basin Linked to Lithologic and Geodynamic Controls"
<p>Supplementary Data for Crelier et al. (2025) entitled “Mobility of South America’s Transcontinental Drainage Divide and Shrinkage of the Paraná River Basin Linked to Lithologic and Geodynamic Controls” and published in Springer Nature's Scientific Reports.</p>
online Supplementary Data for INA Chapter 10
<p>online Supplementary Data for the Chapter 10 of the International Nitrogen Assessment.</p> <p>The .xlsx spreadsheet has been converted from a google sheet. The original formatting of the graphs and some formulas do not work in Excel. <br><br>The original spreadsheet can be found here: <br>https://docs.google.com/spreadsheets/d/1Yp6tqUz48Y7fA-PTsDQHPZo6qNLYZ_Wrh2Amf9_OH0U/edit?gid=422095820#gid=422095820</p>
Supplementary Data: A global fit of non-relativistic effective dark matter operators including solar neutrinos
<p>The files within contain the data from <a href="https://gambitbsm.org/">GAMBIT</a> scans and the scripts to recreate the plots in Avis Kozar et al. "A global fit of non-relativistic effective dark matter operators including solar neutrinos" using <a href="https://www.python.org/">Python</a> and <a href="https://github.com/GambitBSM/pippi">pippi</a>.</p>
Supplementary Data 1-4
<p>The original data for the images are provided in Supplementary Data 1. The GenBank accession numbers and sample information of <em>mcr</em>-carrying plasmids, as well as the Mean, SD, and N values in Figure 8 and Figure 9, are provided in Supplementary Data 2-4. </p>
Supplementary Data and Codes for "Machine Learning Based Long-term Water Quality in the Turbid Pearl River Estuary, China"
<p>The file "Ma_AGUSupplementary.xlsx" contains the in situ data used to develop the ANN model.</p> <p>The files "example_Chla.zip" and "example_TSS.zip" contain codes for retrieving the concentration of Chl-a and TSS on the sea surface of the Pearl River Estuary.</p> <p> </p>
Supplementary data files for JGR 2021JB022729R, Initial results from the Oman Drilling Project Multi-Borehole Observatory: Petrogenesis and ongoing alteration of mantle peridotite in the weathering horizon
<p>These are the four supplementary data files for a paper accepted in the Journal of Geophysical Research (JGR), "Initial results from the Oman Drilling Project Multi-Borehole Observatory: Petrogenesis and ongoing alteration of mantle peridotite in the weathering horizon", 2021JB022729R, which are being uploaded here in conformance with JGR's requirement that data be placed in an open archive. The date of publication is not yet known, but JGR requires that the data be uploaded when the paper is accepted, so we have used the date of acceptance, November 20, 2021.</p>
Data, codes, metadata and supplementary materials used for the research of crossing flows of pedestrians
<p>This is a collection of all the data (trajectory of participants in the experimental trials) that has been used for the research to study the formation of self-organising patterns in crossing flows of pedestrians. The experimental trials conformed to the declaration of Helsinki regarding the ethical approval to use human beings as subjects Here all the codes that has been used and the metadata derived using the codes are also presented in .csv format. The supplementary files are added in the latest version.</p>
Supplementary Data The Critical Need to Foster Reproducibility
<p>Supplementary Data for the article: "The Critical Need to Foster Reproducibility"</p>
Supplementary Table S1and S2 (raw data) of "Effect of salinity and water dilution on environmental DNA degradation in freshwater environments"
<p>All data, including the raw values for the qPCR experiments</p>
Boland et al supplementary data file 1 - Tamoxifen
<p>Supplementary Data File 1 containing differentially regulated genes of control treated or Tamoxifen treated zebrafish larvae. </p>
Data & code supplementary to the paper "Matchgate benchmarking: Scalable benchmarking of a continuous family of many-qubit gates"
<p>Code that executes and interprets the experiment displayed in fig 1 of the manuscript, as well as pickle files containing the actual data collected during the experimental run.</p>
Supplementary data for "Nanoscale damage production by dynamic tensile rupture in alpha-quartz"
<p>In this dataset you can find sample data from simulations of crack propagation and python scripts that can be used to confirm the plots in the paper. </p> <ul> <li>"mainSimualtions" and "parameterVariations" contains the simulations where the crack propagates through alpha-quartz. <ul> <li>"mainSimulations" contain the data used for the plots in the manuscript. Each folder inside "mainSimulations" is one simulation.</li> <li>"parameterVariations" contain data for checking sensitivity to the simulation setup. The folder contains the subfolders: compressiveStress, loadingPlane0110, loadingRate and temperature. Each folder inside the subfolders is one simulation.</li> </ul> </li> <li>For each folder containing one simulations, we provide: <ul> <li>NAME.run: The input script</li> <li>NAME.data: The input data</li> <li>job.sh: Script to run the simulation</li> <li>log.lammps: Thermodynamic output from the simulation</li> <li>fracture_displacement.npy: Output providing the crack tip position with time</li> <li>Note that the pressures given in the folder names and in the simulations are in bars, not MPa.</li> </ul> </li> </ul> <p> </p> <ul> <li>"verify_quartz_parameters" contains scripts and simulations performed to verify that the simulated material has properties similar those of alpha-quartz.</li> </ul> <p> </p> <ul> <li> "mainSimualtions", "parameterVariations" and "verify_quartz_parameters" are in zip containers. In order to use them, please unzip them and leave the resulting folders in the same directory as this README file. </li> </ul> <p> </p> <ul> <li>The python scripts "NAME.py" shows how to extract the relevant data from the lammps log files, which enables reproduction of the figures in the paper. See instructions below to use the scripts.</li> </ul> <p><br> Installation instructions to make the python plot scripts working, assuming you already have numpy and matplotlib:</p> <p>> pip3 install git+https://github.com/henriasv/lammps-logfile.git<br> </p> <p>If this does not work, please contact Marthe Grønlie Guren, m.g.guren@geo.uio.no</p>
Supplementary data from: Diversity, population structure and palaeoecology of the Pleistocene large cervids from the Padang Highlands, Sumatra
<p>This chapter deals with the dentognathic remains of the large deer from the Padang Highland caves in Sumatra. By means of a multiproxy approach we attempt to more fully document the presence and characteristics of the cervid family during the Late Pleistocene in this region. We used linear and geometric morphometric techniques to investigate variation, taxonomic position and body size trends in a dataset of upper and lower molars. Dental mesowear was used to assess dietary prefence in a sub-sample. The results suggest the Padang Highland cervids belonged to multiple populations of an early stock of <em>Rusa</em> deer of the size of <em>Rusa unicolor</em>, but morphologically similar to <em>Rusa timorensis</em>. <em>Rusa</em> sp. was reconstructed as a mixed feeder with an increase of the grazing component with age. </p>
Supplementary Data Files from: A lamprey neural cell type atlas illuminates the origins of the vertebrate brain
<p><strong>Supplementary Data </strong><strong>1</strong></p> <p>Lamprey genome custom annotation files.</p> <p> </p> <p><strong>Supplementary Data 2</strong></p> <p><em>In situ</em> images produced in this study.</p>
Supplementary data for the publication of Characterization of Emissions in Fab Labs: an Additive Manu-facturing Environment Issue
<p>Datasets for the publication of the article "Characterization of Emissions in Fab Labs: an Additive Manufacturing Environment Issue":</p> <p>- Ultrafine Particles: UFP per Zone and mode;</p> <p>- VOC emissions: VOC per Zone and mode.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.