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A list of collection codes and corresponding BOLD numbers to sixty new dragonfly and damselfly species from Africa
<p>These files contain the data and accession numbers used in the following publication:</p> <p>Dijkstra, Klaas-Douwe B. et al.. (2015). Sixty new dragonfly and damselfly species from Africa (Odonata). Odonatologica 44(4): 447-678. doi:10.5281/zenodo.35388</p> <p>Contents</p> <p>- Lab (BOLD numbers)<br /> - Vouchers<br /> - Taxonomy<br /> - Specimen details<br /> - CollectionData</p> <p> </p> <p>uploaded for Odonatologica by Plazi</p>
The list of SNPs
<p>This a long list = {{info for hb}, {info for Kr}, {info for gt}, {info for kni}};<br /> info for gene = list with elements {"chromosome name", global coordinate of polymorphic position, "nucleotide in the reference genome at this position", the list of nucleotides at this position for 216 lines, for example {"A","A"} (two letters for diploids) }</p> <p> </p>
List of putatively rare species in the Neotropics and Amazonia, with distance between doubletons
<p>Appendix to Zizka et al 2016</p> <p>Species occurrences in Appendix 3 downloaded from www.gbif.org, doi:10.15468/dl.om11gi.</p>
FIGURE 4 in An annotated check-list of lophogastrids (Crustacea: Lophogastrida) from the seas of the Iberian Peninsula
FIGURE 4. Similarity of subregions (nMDS / clustering) based on presence / absence of lophogastrid species in the 6 main geographic areas of the Iberian Seas. The analysis included data for the Mediterranean coasts of Italy (* Wittmann & Ariani 2010) and Celtic, South Icelandic, South Greenlandic and West Atlantic regions (** Petryashov 2009).
FIGURE 1 in An annotated check-list of lophogastrids (Crustacea: Lophogastrida) from the seas of the Iberian Peninsula
FIGURE 1. Map of the Iberian Peninsula and nearby waters showing the different areas considered to characterize the spatial distribution of lophogastrid species.
FIGURE 2 in An annotated check-list of lophogastrids (Crustacea: Lophogastrida) from the seas of the Iberian Peninsula
FIGURE 2. Cumulative number of the first record of species (N spp) and published reports of lophogastrids (N ms) over time in the Iberian Seas.
FIGURE 5 in An annotated check-list of lophogastrids (Crustacea: Lophogastrida) from the seas of the Iberian Peninsula
FIGURE 5. Similarity of species distributions (nMDS / clustering) based on presence / absence of lophogastrid species in the 6 main geographic areas of the Iberian Seas (this study), the Mediterranean coasts of Italy (Wittmann & Ariani 2010) and Celtic, South Icelandic, South Greenlandic and North European Atlantic regions (Petryashov 2009).
A list with recommended journals by Russian VAK
<p>Processed list of recommended journals in social science and computer science by VAK (source of raw data: http://vak.ed.gov.ru/87, date: 19.04.2017).</p>
Updated list of QPS-recommended microorganisms for safety risk assessments carried out by EFSA
<p>The European Food Safety Authority (EFSA) asked the Panel on Biological Hazards (BIOHAZ) to deliver a scientific Opinion on the maintenance of the list of qualified presumption of safety (QPS) biological agents. The QPS approach was developed by the EFSA Scientific Committee to provide a harmonised generic pre-evaluation to support safety risk assessments of biological agents intentionally introduced into the food and feed chain, in support of the concerned scientific Panels and Units in the frame of market authorisations.</p> <p>The taxonomic identity, body of knowledge, the safety concerns in relation to pathogenicity and virulence, and the safety for the environment of those microbiological agents are assessed. Safety concerns identified for a respective taxonomic unit (TU) are, where possible and reasonable in number, reflected as ‘qualifications’ that are assessed at the strain level by the EFSA’s scientific Panels.</p> <p>The<strong> “list of microorganisms with QPS status”</strong> first established in 2007, has been revised and updated annually until 2014 via <strong>QPS</strong> <strong>Opinions</strong>; since 2014 the updates are carried out and published every 3 years. If new information is retrieved from extended literature searches (ELS) that would change the QPS status of a TU or its qualifications, this is also published in the Panel Statement covering the previous 6-months period. The <strong>ELS </strong><strong>protocol</strong> can be found at <a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fzenodo.org%2Fdoi%2F10.5281%2Fzenodo.3607188&data=05%7C02%7C%7Ca719c81b95134433fddc08dc112814e1%7C406a174be31548bdaa0acdaddc44250b%7C1%7C0%7C638404111040390688%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=FaY3tbLnn%2BB%2BDu3PrtEzJR0zPa14z%2FpoKWUBBOaHk34%3D&reserved=0">https://zenodo.org/doi/10.5281/zenodo.3607188</a> and the <strong>Search</strong><strong> strategies</strong> are available at: <a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdoi.org%2F10.5281%2Fzenodo.3607193&data=02%7C01%7C%7Ca3e4d3a851c84defc2a008d7aa44f9e5%7C406a174be31548bdaa0acdaddc44250b%7C1%7C0%7C637165085527347066&sdata=tCzKMQLR2I%2BZBr%2F0sOXPDoPitdjQyqKdlVqDqwigA%2Bo%3D&reserved=0">https://doi.org/</a><a href="https://doi.org/10.5281/zenodo.3607192">10.5281/zenodo.3607192</a>.</p> <p> </p> <p>The <strong>QPS Panel Statement</strong> also includes the evaluation of microbiological agents notified to EFSA within the 6-month period for an assessment for feed additives, food enzymes, food additives and flavourings, and novel foods or plant protection products for a possible QPS status. The new QPS status recommendations are incorporated into the 2022 updated<strong> “list of microorganisms with QPS status</strong>” is available in this upload. The list of “<strong>Microbi</strong><strong>ological agents </strong><strong>as notified to EFSA</strong><strong>”</strong> from 2007, in the context of technical dossiers to EFSA Units, for intentional use in feed and/or food or as sources of food and feed additives, enzymes and plant protection products (PPPs) for safety assessment can be found at <a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdoi.org%2F10.5281%2Fzenodo.3607184&data=02%7C01%7C%7Ca3e4d3a851c84defc2a008d7aa44f9e5%7C406a174be31548bdaa0acdaddc44250b%7C1%7C0%7C637165085527357024&sdata=%2Fe7qiRXiuKQi%2FBvK5S%2F7undYHv7ibxBlLEHPcSlRz24%3D&reserved=0">https://doi.org/10.5281/zenodo.</a><a href="https://doi.org/10.5281/zenodo.3607183">3607183</a>.</p> <p> </p> <p><strong>Useful links on EFSA QPS</strong></p> <p>EFSA topic on QPS: <a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.efsa.europa.eu%2Fen%2Ftopics%2Ftopic%2Fqualified-presumption-safety-qps&data=02%7C01%7C%7Ca3e4d3a851c84defc2a008d7aa44f9e5%7C406a174be31548bdaa0acdaddc44250b%7C1%7C0%7C637165085527366985&sdata=TlcglouTWhBY24K5ApAoawNpADKgyl%2FefxVUEbxjQo0%3D&reserved=0">https://www.efsa.europa.eu/en/topics/topic/qualified-presumption-safety-qps</a></p> <p>Link to the virtual issue on QPS on Wiley Online Library: <a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fefsa.onlinelibrary.wiley.com%2Fdoi%2Ftoc%2F10.1002%2F(ISSN)1831-4732.QPS&data=02%7C01%7C%7C7f88eba744034d83233b08d7a8cd3c1c%7C406a174be31548bdaa0acdaddc44250b%7C1%7C0%7C637163471731831002&sdata=AiprIUek%2B%2But46VabBGk0IMIgLR98CDmxoINYPkKBbs%3D&reserved=0">https://efsa.onlinelibrary.wiley.com/doi/toc/10.1002/(ISSN)1831-4732.QPS</a></p> <p><strong>Versions history:</strong></p> <p>Versions 1 and 2 were substituted by version 3 – all are associated with the QPS Panel statement EFSA 7: suitability of taxonomic units notified to EFSA until September 2017: <a href="https://efsa.onlinelibrary.wiley.com/doi/epdf/10.2903/j.efsa.2018.5131">https://efsa.onlinelibrary.wiley.com/doi/epdf/10.2903/j.efsa.2018.5131</a> </p> <p>Version 4 is associated with the QPS Panel statement EFSA 8: suitability of taxonomic units notified to EFSA until March 2018: <a href="https://efsa.onlinelibrary.wiley.com/doi/10.2903/j.efsa.2018.5315">https://efsa.onlinelibrary.wiley.com/doi/10.2903/j.efsa.2018.5315</a> </p> <p>Versions 5 and 6 were substituted by version 7 – all are associated with the QPS Panel statement EFSA 9: suitability of taxonomic units notified to EFSA until September 2018: <a href="https://efsa.onlinelibrary.wiley.com/doi/10.2903/j.efsa.2019.5555">https://efsa.onlinelibrary.wiley.com/doi/10.2903/j.efsa.2019.5555</a> </p> <p>Version 8 is associated with the QPS Panel statement EFSA 10: suitability of taxonomic units notified to EFSA until March 2019: <a href="https://efsa.onlinelibrary.wiley.com/doi/10.2903/j.efsa.2019.5753">https://efsa.onlinelibrary.wiley.com/doi/10.2903/j.efsa.2019.5753</a> </p> <p>Version 9 is associated with the QPS Panel statement EFSA 11: suitability of taxonomic units notified to EFSA until September 2019: <a href="https://efsa.onlinelibrary.wiley.com/doi/10.2903/j.efsa.2020.5965">https://efsa.onlinelibrary.wiley.com/doi/10.2903/j.efsa.2020.5965</a> and with the Scientific Opinion on the update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA (2017-2019): <a href="https://efsa.onlinelibrary.wiley.com/doi/10.2903/j.efsa.2020.5966">https://efsa.onlinelibrary.wiley.com/doi/10.2903/j.efsa.2020.5966</a> </p> <p>Version 10: updates version 9 following the update of the qualification of <em>Bacillus velezensis</em> as: ‘absence of toxigenic potential and absence of aminoglycoside production ability’ - applied in the QPS Statement part 11 (ON-5965) and in the 2019 Scientific Opinion (ON-5966).</p> <p>Version 11: updates version 10 following the addition of the <em>Bacillus circulans</em> ‘for production purposes only’ - applied in the QPS Statement part 13 (ON-6377) and in the 2019 Scientific Opinion (ON-5966).</p> <p>Version 12 updates version 11 following the addition of the <em>Bacillus paralicheniformis</em><strong> </strong>with the qualifications 'absence of toxigenic activity’ and ‘absence of genetic information to synthesize bacitracin';<strong> </strong>and adding <em>Schizochytrium limacinum</em>, which is a synomym for <em>Aurantiochytrium</em> <em>limacinum,</em> - applied in the QPS Statement part 14 (ON-6689)<strong> </strong>and in the 2019 Scientific Opinion (ON-5966).</p> <p>Version 13 updates version 12 following the addition of <em>Haematococcus lacustris</em> synonym <em>Haematococcus pluvialis</em>, recommended for QPS status with the qualification ‘for production purposes only’. Some other changes related to taxonomy and qualifications are described in the QPS Statement part 15 (ON-7045)<strong>.</strong></p> <p>Version 14, update of version 13, is related to QPS Statement part 16 (ON-7408)<strong>.</strong></p> <p>Version 15 is related to QPS Statement part 17 (ON-7746)<strong>.</strong></p> <p>Version 16 is related to QPS Statement part 18 (ON-8092)<strong>.</strong></p> <p>Version 17 is related to QPS Statement part 19 (ON-8517)<strong>.</strong></p> <p>Version 18 is also related to QPS Statement part 19 (ON-8517) with a small correction<strong>.</strong></p> <p>Version 19 and 20 are related to QPS Statement part 20 (ON-8882).</p> <p>Version 21 is related to QPS Statement part 21 (ON-9169)</p> <p>Version 22 is related to QPS Statement part 22 (ON-9510)</p> <p> </p> <p> </p> <p><strong>Note: </strong>As of January 2022 the updated list is provided only as excel file format.</p>
Pan Arctic Species List (PASL) matching script
<p>This script matches a provided species list with the Panarctic Species List (PASL) (Raynolds et al, 2013) to obtain the commonly accepted scientific names of the plants, including short names and full names.</p> <p>Inputs:</p> <ul> <li>Species list: CSV file containing a list of species names, as provided by the geobotanist;</li> <li>PASL: a text file with the Panarctic Species List names, including the short and full scientific names of the plants (with synonyms).</li> </ul> <p>Outputs:</p> <ul> <li>A new file with the matched species list, including the short and full scientific names of the plants as found in the PASL.</li> </ul> <p><span>References:</span></p> <ul> <li> <span>Raynolds, M.K., Breen, A.L., Walker, D.A., Elven, R., Belland, R., Konstantinova, N., Kristinsson, H. & Hennekens, S. (2013). The Pan-Arctic Species List (PASL). </span>Arctic Vegetation Archive (AVA) Workshop.</li> </ul>
Basic list of international academic societies related to ecology and evolutionary biology.
<p>List of international societies related to ecology, evolutionary biology or whole-organism biology. The list is based on the table from Lagisz et al. (2023) (top 16 societies), appended with additional societies from internet searches, personal communication and societies associated with journals listed in SCImago under Ecology, Evolution, Behaviour and Systematics category. Alternative society names (usually in a non-English language) are not shown. Abbreviated society names (non-unique) usually match the official abbreviated society names (English or nn-English), but if abbreviation was not found on the website it was made up from the English society name. In the "Extract" column, "Yes" indicates active societies with individual membership.</p>
Strategic crisis management in the EU: reference list
<p>This dataset includes all the bibliographic references from the SAPEA evidence review report 'Strategic crisis management in the EU'.</p>
Lists of stopwords, polarity shifters and AnAwords of Bosnian language
<p>The dataset comprises three lists, a list of stopwords, a list of polarity shifters and a list of AnAwords (in two files) of the Bosnian language.</p> <p><strong>Stopwords</strong> refer to a set of words contained in a stop list that are deliberately filtered out or "stopped" during the processing of natural language data, specifically text. These words are typically common and frequently occurring words in a language that are considered to have little or no significance in determining the meaning or context of a text.</p> <p><strong>AnAwords (intensifiers and diminishers)</strong> refer to a set of words primarily functioning as intensifiers and diminishers, often manifesting as adverbs of manner and adjectives. The compilation of AnAwords is based on categorization, which includes six sublists: maximizers, boosters, approximators, relative intensifiers, diminishers, and minimizers. The list is split into two parts (intensifiers and diminishers) in two separate files.</p> <p><strong>Polarity shifters </strong>are words that can affect the <strong>polarity</strong> of a phrase, inverting or weakening it. When these words are content <strong>words</strong>, such as verbs, nouns, and adjectives, we refer to them as <strong>polarity</strong> <strong>shifters</strong>.</p>
Figure 1 in New record and revised list of Megalops atlanticus (Elopiformes: Megalopidae) from Atlantic European waters
Figure 1. – Specimen of Megalops atlanticus of 1885 mm TL and location of records in the European Atlantic waters. The black dots constitute the historical captures and the red triangle represents the present record in the Gulf of Cádiz in 2018.
List of business and system roles of Northern Cluster in OneNet project
<p>The list of roles includes in CSV format the names and definitions of business roles and system roles referred to in the use cases of OneNet Northern cluster. The Harmonised Electricity Market Role Model (HEMRM) defines many of the roles used. However, if not existing in HEMRM, use cases provide their own definitions, sometimes relying on the ones proposed by BRIDGE Initiative.</p> <p>The context of usage of the roles in business use cases and system use cases can be found here: <a href="https://onenet-project.eu/wp-content/uploads/2023/10/D7.2_OneNet_v1.0.pdf">https://onenet-project.eu/wp-content/uploads/2023/10/D7.2_OneNet_v1.0.pdf</a>,<a href="https://onenet-project.eu/wp-content/uploads/2023/05/OneNet_D7.3_v1.0-1.pdf"> https://onenet-project.eu/wp-content/uploads/2023/05/OneNet_D7.3_v1.0-1.pdf</a>,<a href="https://onenet-project.eu/wp-content/uploads/2022/12/OneNet_D7.4_v.1.0.pdf">https://onenet-project.eu/wp-content/uploads/2022/12/OneNet_D7.4_v.1.0.pdf</a></p> <p> The explanation of HEMRM can be found here: <a href="https://mwgstorage1.blob.core.windows.net/public/Ebix/Harmonised_Role_Model_2023-01.pdf">https://mwgstorage1.blob.core.windows.net/public/Ebix/Harmonised_Role_Model_2023-01.pdf</a></p> <p> The explanation of additions to HEMRM as proposed by BRIDGE Initiative: <a href="https://energy.ec.europa.eu/system/files/2021-06/bridge_wg_regulation_eu_bridge_hemrm_report_2020-2021_0.pdf">https://energy.ec.europa.eu/system/files/2021-06/bridge_wg_regulation_eu_bridge_hemrm_report_2020-2021_0.pdf</a></p>
List of information objects of Northern Cluster in OneNet project
<p>List of information objects includes in CSV format the names and descriptions of role-to-role data exchanges referred to in the use cases of OneNet Northern cluster.</p> <p>The context of usage of the information objects in business use case and system use cases can be found here: <a href="https://onenet-project.eu/wp-content/uploads/2023/10/D7.2_OneNet_v1.0.pdf">https://onenet-project.eu/wp-content/uploads/2023/10/D7.2_OneNet_v1.0.pdf</a>,<a href="https://onenet-project.eu/wp-content/uploads/2023/05/OneNet_D7.3_v1.0-1.pdf"> https://onenet-project.eu/wp-content/uploads/2023/05/OneNet_D7.3_v1.0-1.pdf</a>,<a href="https://onenet-project.eu/wp-content/uploads/2022/12/OneNet_D7.4_v.1.0.pdf">https://onenet-project.eu/wp-content/uploads/2022/12/OneNet_D7.4_v.1.0.pdf</a></p>
Corrected Diophantine Rational Sextuples List
<p>Phillip E. Gibbs published a list of 644 Diophantine Sextuples in <a href="https://www.researchgate.net/profile/Philip-Gibbs-2/publication/309429323_A_Survey_of_Rational_Diophantine_Sextuples_of_Low_Height/links/581099ae08aef2ef97b28ed8/A-Survey-of-Rational-Diophantine-Sextuples-of-Low-Height.pdf">https://www.researchgate.net/profile/Philip-GiA Survey of Rational Diophantine Sextuples of Low Height</a> in Annex A.</p> <p>Unfortunately the indexing was incorrect. The downloaded file has made corrections to his original list, and carefully followed the index scheme which he used as much as possible.</p>
Curated new database list from the 2024 NAR Database issue - Table 1
<p>This is a curated list of 90 new databases recently published in the <a href="https://doi.org/10.1093/nar/gkad1173">2024 Nucleic Acids Research (NAR) Database issue</a>. These databases were specifically categorized as the "new databases" (not previously published) in Table 1 of the <a href="https://doi.org/10.1093/nar/gkad1173">2024 compilation paper</a>. In this dataset, we curated a set of data columns to facilitate knowledge modeling and database integration efforts:</p> <ul> <li>"has API": does the database provide API access, Yes or No.</li> <li>"Primary Entity Type": the primary biomedical entity types captured in the database.</li> <li>"Downloadable": does the database provide direct file downloads, Yes or No.</li> <li>"license specified?": does the database specify a data license explicitly, Yes or No.</li> <li>"knowledge level": the level of knowledge expressed in the database, example values are specified in <a href="https://biolink.github.io/biolink-model/knowledge_level/">the BioLink model</a>.</li> <li>"agent type": the high-level category of agent who originally generated a statement of knowledge or other type of information, example values are specified in <a href="https://biolink.github.io/biolink-model/agent_type/">the BioLink model</a>.</li> <li>"notes": optional extra notes</li> </ul>
List of Twitter bots that mention scientific publications
<p>This collection of datasets comes from the paper titled <em>"The Botization of Science? Large-scale study of the presence and impact of Twitter bots in science dissemination"</em> and includes two files:</p> <ol> <li><strong>Twitter_bots_list.txt</strong> - Contains a list of 11,073 Twitter bots that mention scientific publications, as identified in the study.</li> <li> <p><strong>Twitter_botscores.tsv</strong> - Includes the botscores of 4,872,369 Twitter accounts analyzed in the study, providing a measure of the likelihood that an account is a bot.</p> </li> </ol>
National Checklists: Czech Republic Species List
Data from: GBIF.org (23 January 2025) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.vd2ajk" target="_blank" rel="noopener">https://doi.org/10.15468/dl.vd2ajk</a>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.