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Surrogate Modeling Benchmark - One-dimensional diffusion model
<p>This dataset is related to the One-dimensional diffusion model benchmark case. A detailed description of the benchmark case can be found on the public online community website UQWorld: <a href="https://uqworld.org/t/benchmark-case-one-dimensional-diffusion-model" target="_blank" rel="noopener">https://uqworld.org/t/benchmark-case-one-dimensional-diffusion-model</a>.</p> <p>The experimental designs include datasets with 200, 400, 600, 800, and 1000 samples, each generated using optimized maximin distance Latin Hypercube Sampling (LHS) with 1000 iterations. Each dataset is replicated 20 times. The validation set contains 100,000 samples generated by Monte Carlo simulation. Each dataset contains input samples and the corresponding computational model responses.</p> <h2>Description of the dataset file</h2> <p>The dataset file includes two variables:</p> <ul> <li><em>ExpDesigns</em>, and</li> <li><em>ValidationSet</em>.</li> </ul> <p>Both variables are Matlab structures with fields <em>X</em>, <em>Y</em>, and <em>nSamples</em>. Variable <em>ExpDesigns</em> is a non-scalar structure sized according to the number of experimental design groups. Each field of <em>X</em> for the i-th element of the struct array contains replicated datasets, forming a matrix of size [number of samples] x [dimensionality] x [number of replications]. Similarly, each field of Y for the i-th element contains replicated computational model responses that correspond to the experimental design of the same replication, sized [number of samples] x [number of model outputs] x [number of replications]. The same structure logic applies to the <em>ValidationSet</em> variable, except it contains only one dataset per benchmark case.</p> <p>The structure can be summarized as follows:</p> <ul> <li>ExpDesigns(i).X(j,k,l) <ul> <li>i: dataset group,</li> <li>j: sample index,</li> <li>k: variable index, and</li> <li>l: replication index.</li> </ul> </li> </ul> <ul> <li>ExpDesigns(i).Y(j,m,l) <ul> <li>i, j, l: same as above,</li> <li>m: computational model output index.</li> </ul> </li> </ul> <ul> <li>ValidationSet.X(j,k) <ul> <li>j, k: same as above.</li> </ul> </li> </ul> <ul> <li>ValidationSet.Y(j,m) <ul> <li>j, m: same as above.</li> </ul> </li> </ul> <h2>Description of benchmarked metamodel competitors</h2> <p>The selection of competitors was based on our experience with meta-modeling and includes various metamodel types: Polynomial Chaos Expansions (PCE), Polynomial Chaos Kriging (PCK), and Kriging. Given that each metamodel has many hyperparameters, we chose the most general settings to address different benchmark case difficulties, including dimensionality, nonlinearity, and non-monotonicity.</p> <p>For <strong>Polynomial Chaos Expansions (PCE)</strong>, we used a polynomial degree and q-norm adaptivity approach. This approach adaptively increases the maximum polynomial degree and truncation q-norm until the estimated leave-one-out error starts increasing. Maximum polynomial interaction terms were limited to 2 due to the memory requirements for large model dimensionality and large experimental designs. We tested three different solvers to calculate the PCE coefficients: Least Angle Regression (LARS), Orthogonal Matching Pursuit (OMP), and Subspace Pursuit (SP).</p> <p><strong>Polynomial Chaos Kriging (PCK)</strong> employs a sequential combination strategy of PCE and Kriging. PCE uses degree adaptivity with a fixed q-norm. The maximum number of interactions is again set to 2 with the LARS solver. Ordinary Kriging is applied using the Matérn-5/2 correlation family, ellipsoidal, and anisotropic correlation function. We used a hybrid genetic algorithm to optimize the hyperparameters.</p> <p>We benchmarked both linear and ordinary <strong>Kriging</strong>, including Matérn-5/2 and Gaussian correlation families and separable and ellipsoidal correlation, resulting in eight different Kriging competitors. The hyperparameters were calculated using a hybrid covariance matrix adaptation-evolution strategy optimization.</p> <p>For further details on the settings, please refer to the competitors.m file and UQLab user manuals:</p> <ul> <li>S. Marelli, N. Luethen, B. Sudret, <a href="https://www.uqlab.com/pce-user-manual">UQLab User Manual – Polynomial Chaos Expansions</a>, Report UQLab-V2.1-104, Chair of Risk, Safety and Uncertainty Quantification, ETH Zurich, Switzerland, 2024.</li> <li>C. Lataniotis, D. Wicaksono, S. Marelli, B. Sudret, <a href="https://www.uqlab.com/kriging-user-manual">UQLab User Manual – Kriging (Gaussian Process Modeling)</a>, Report UQLab-V2.1-105, Chair of Risk, Safety and Uncertainty Quantification, ETH Zurich, Switzerland, 2024.</li> <li>R. Schoebi, S. Marelli, B. Sudret, <a href="https://www.uqlab.com/pck-user-manual">UQLab User Manual – Polynomial Chaos Kriging</a>, Report UQLab-V2.0-109, Chair of Risk, Safety and Uncertainty Quantification, ETH Zurich, Switzerland, 2022.</li> </ul> <h2>Description of the results file</h2> <p>The results file contains one variable: <em>Metrics</em>. It is a Matlab structure with fields corresponding to each competitor (currently 12). Each competitor field contains data of type non-scalar struct array. The performance metrics included are RelMSE, RelRMSE, RelMAE, MAPE, Q2, and RelCVErr. Each field of Metrics.(CompetitorName) for the i-th element of the struct array contains metrics corresponding to the replicated dataset and the competitor, structured as follows:</p> <ul> <li>Metrics.(CompetitorName)(i).(MetricName)(l)<br> <ul> <li>i: dataset group,</li> <li>l: replication index.</li> </ul> </li> </ul> <p>The description of the performance measures (metrics) can be found here: <a href="https://uqworld.org/t/metamodel-performance-measures/" target="_blank" rel="noopener">https://uqworld.org/t/metamodel-performance-measures/</a>.</p> <h2>Additional files</h2> <p>We provide files in three languages (MATLAB, Python, and Julia) to showcase how to work with datasets, results, and their visualization. The files are called <em>working_with_datafiles.*</em> (the extension depends on the selected language).</p> <h2>Acknowledgment</h2> <p>This project was supported by the Open Research Data Program of the ETH Board under Grant number EPFL SCR0902285. The calculations were run on the Euler cluster of ETH Zürich using the MATLAB-based UQLab software developed at the Chair of Risk, Safety and Uncertainty Quantification of ETH Zürich.</p>
Linked collectors and determiners for: Unraveling one of the ' Big Five': update of the taxonomy of Triphoridae (Gastropoda, Triphoroidea) from Brazil.
Natural history specimen data linked to collectors and determiners held within, "Unraveling one of the ' Big Five': update of the taxonomy of Triphoridae (Gastropoda, Triphoroidea) from Brazil". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/06748f67-18d9-4c3e-a14c-77de1664d81b">https://bionomia.net/dataset/06748f67-18d9-4c3e-a14c-77de1664d81b</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/06748f67-18d9-4c3e-a14c-77de1664d81b">https://gbif.org/dataset/06748f67-18d9-4c3e-a14c-77de1664d81b</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: A mountain of millipedes II: The genus Aquattuor Frederiksen, 2013 - five new species from the Udzungwa Mountains and one from Mt. Kilimanjaro, Tanzania (Diplopoda, Spirostreptida, Odontopygidae).
Natural history specimen data linked to collectors and determiners held within, "A mountain of millipedes II: The genus Aquattuor Frederiksen, 2013 - five new species from the Udzungwa Mountains and one from Mt. Kilimanjaro, Tanzania (Diplopoda, Spirostreptida, Odontopygidae)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/f492ad9b-a83d-4d8e-bdf9-20ef759b75c1">https://bionomia.net/dataset/f492ad9b-a83d-4d8e-bdf9-20ef759b75c1</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/f492ad9b-a83d-4d8e-bdf9-20ef759b75c1">https://gbif.org/dataset/f492ad9b-a83d-4d8e-bdf9-20ef759b75c1</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Contribution to the knowledge of Chinese Phasmatodea III: Catalogue of the phasmids of Hainan Island, China, with descriptions of one new genus, one new species and two new subspecies and proposals of three new combinations.
Natural history specimen data linked to collectors and determiners held within, "Contribution to the knowledge of Chinese Phasmatodea III: Catalogue of the phasmids of Hainan Island, China, with descriptions of one new genus, one new species and two new subspecies and proposals of three new combinations". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/3e762628-3d93-4f02-8516-230939876695">https://bionomia.net/dataset/3e762628-3d93-4f02-8516-230939876695</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/3e762628-3d93-4f02-8516-230939876695">https://gbif.org/dataset/3e762628-3d93-4f02-8516-230939876695</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: New records of Philopterus (Ischnocera: Philopteridae) from Acrocephalidae and Locustellidae, with description of one new species from Regulidae.
Natural history specimen data linked to collectors and determiners held within, "New records of Philopterus (Ischnocera: Philopteridae) from Acrocephalidae and Locustellidae, with description of one new species from Regulidae". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/386a0d21-1155-4a5e-b3a0-bbf1369f64af">https://bionomia.net/dataset/386a0d21-1155-4a5e-b3a0-bbf1369f64af</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/386a0d21-1155-4a5e-b3a0-bbf1369f64af">https://gbif.org/dataset/386a0d21-1155-4a5e-b3a0-bbf1369f64af</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Taxonomic revision of Cylindera Westwood, 1831 subgenus Parmecus Motschulsky 1864 stat. rest., stat. nov. (Coleoptera: Carabidae: Cicindelinae) with the description of one new species from Yunnan Province, China.
Natural history specimen data linked to collectors and determiners held within, "Taxonomic revision of Cylindera Westwood, 1831 subgenus Parmecus Motschulsky 1864 stat. rest., stat. nov. (Coleoptera: Carabidae: Cicindelinae) with the description of one new species from Yunnan Province, China". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/aa3da0bc-3736-490e-ad9c-3e5f8f4524e1">https://bionomia.net/dataset/aa3da0bc-3736-490e-ad9c-3e5f8f4524e1</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/aa3da0bc-3736-490e-ad9c-3e5f8f4524e1">https://gbif.org/dataset/aa3da0bc-3736-490e-ad9c-3e5f8f4524e1</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Two new and one newly recorded species of Anomala Samouelle, 1819 (Coleoptera Scarabaeidae: Rutelinae) from Yunnan, China.
Natural history specimen data linked to collectors and determiners held within, "Two new and one newly recorded species of Anomala Samouelle, 1819 (Coleoptera Scarabaeidae: Rutelinae) from Yunnan, China". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/62014a8c-1b33-4609-8f33-656de4f3fdb5">https://bionomia.net/dataset/62014a8c-1b33-4609-8f33-656de4f3fdb5</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/62014a8c-1b33-4609-8f33-656de4f3fdb5">https://gbif.org/dataset/62014a8c-1b33-4609-8f33-656de4f3fdb5</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Description of one new genus and four new species of mynoglenine spiders from Africa (Araneae: Linyphiidae: Mynogleninae).
Natural history specimen data linked to collectors and determiners held within, "Description of one new genus and four new species of mynoglenine spiders from Africa (Araneae: Linyphiidae: Mynogleninae)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/e87a4472-0aeb-49da-9689-e3139e676432">https://bionomia.net/dataset/e87a4472-0aeb-49da-9689-e3139e676432</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/e87a4472-0aeb-49da-9689-e3139e676432">https://gbif.org/dataset/e87a4472-0aeb-49da-9689-e3139e676432</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Review of the leafhopper genus Hylica Stål (Hemiptera: Cicadellidae: Hylicinae) with description of one new species.
Natural history specimen data linked to collectors and determiners held within, "Review of the leafhopper genus Hylica Stål (Hemiptera: Cicadellidae: Hylicinae) with description of one new species". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/d0fbb3de-5cfd-4253-b7d4-9bf5496991bf">https://bionomia.net/dataset/d0fbb3de-5cfd-4253-b7d4-9bf5496991bf</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/d0fbb3de-5cfd-4253-b7d4-9bf5496991bf">https://gbif.org/dataset/d0fbb3de-5cfd-4253-b7d4-9bf5496991bf</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: The Plecoptera of Panama. II. Two new species, one new country record, and additional locality records of Anacroneuria (Perlidae) from western Panama.
Natural history specimen data linked to collectors and determiners held within, "The Plecoptera of Panama. II. Two new species, one new country record, and additional locality records of Anacroneuria (Perlidae) from western Panama". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/b67114df-ddee-49d9-a264-a3c20bded320">https://bionomia.net/dataset/b67114df-ddee-49d9-a264-a3c20bded320</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/b67114df-ddee-49d9-a264-a3c20bded320">https://gbif.org/dataset/b67114df-ddee-49d9-a264-a3c20bded320</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: One hundred years of solitude ended: A second species of Marmasoma White, 1916 (Diptera, Bombyliidae, Bombyliinae, Eclimini) from Australia.
Natural history specimen data linked to collectors and determiners held within, "One hundred years of solitude ended: A second species of Marmasoma White, 1916 (Diptera, Bombyliidae, Bombyliinae, Eclimini) from Australia". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/98c8228e-a395-48d7-a988-4aa01c6936f8">https://bionomia.net/dataset/98c8228e-a395-48d7-a988-4aa01c6936f8</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/98c8228e-a395-48d7-a988-4aa01c6936f8">https://gbif.org/dataset/98c8228e-a395-48d7-a988-4aa01c6936f8</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Taxonomic notes on Trigonidium and related groups with one new species from the Philippines (Orthoptera: Trigonidiidae; Trigonidiinae).
Natural history specimen data linked to collectors and determiners held within, "Taxonomic notes on Trigonidium and related groups with one new species from the Philippines (Orthoptera: Trigonidiidae; Trigonidiinae)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/959bc098-1b50-41a8-bf9f-2e3996288c54">https://bionomia.net/dataset/959bc098-1b50-41a8-bf9f-2e3996288c54</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/959bc098-1b50-41a8-bf9f-2e3996288c54">https://gbif.org/dataset/959bc098-1b50-41a8-bf9f-2e3996288c54</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Four new species and one new subspecies of Arctiinae (Lepidoptera: Erebidae) from the Tambopata river, Madre de Dios, Peru.
Natural history specimen data linked to collectors and determiners held within, "Four new species and one new subspecies of Arctiinae (Lepidoptera: Erebidae) from the Tambopata river, Madre de Dios, Peru". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/876d1781-7086-46ee-b7d6-94753804c4b2">https://bionomia.net/dataset/876d1781-7086-46ee-b7d6-94753804c4b2</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/876d1781-7086-46ee-b7d6-94753804c4b2">https://gbif.org/dataset/876d1781-7086-46ee-b7d6-94753804c4b2</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Siphonophoridae from Brazilian Amazonia. Part 2 - Two new treeclimbing species of the genus Siphonophora, including one showing pilosity polymorphism (Diplopoda, Siphonophorida).
Natural history specimen data linked to collectors and determiners held within, "Siphonophoridae from Brazilian Amazonia. Part 2 - Two new treeclimbing species of the genus Siphonophora, including one showing pilosity polymorphism (Diplopoda, Siphonophorida)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/816ae2d5-1123-47be-9bd5-f5270a315f7a">https://bionomia.net/dataset/816ae2d5-1123-47be-9bd5-f5270a315f7a</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/816ae2d5-1123-47be-9bd5-f5270a315f7a">https://gbif.org/dataset/816ae2d5-1123-47be-9bd5-f5270a315f7a</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Three new species and one new subspecies of Deserticossus Yakovlev, 2006 (Lepidoptera: Cossidae) from Kazakhstan, Kyrgyzstan and Russia, with world catalogue of the genus.
Natural history specimen data linked to collectors and determiners held within, "Three new species and one new subspecies of Deserticossus Yakovlev, 2006 (Lepidoptera: Cossidae) from Kazakhstan, Kyrgyzstan and Russia, with world catalogue of the genus". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/75b40ab7-a808-41ed-bb36-727c059c3e05">https://bionomia.net/dataset/75b40ab7-a808-41ed-bb36-727c059c3e05</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/75b40ab7-a808-41ed-bb36-727c059c3e05">https://gbif.org/dataset/75b40ab7-a808-41ed-bb36-727c059c3e05</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: FBIP: One baobab species or two-morphological and molecular data to address this question.
Natural history specimen data linked to collectors and determiners held within, "FBIP: One baobab species or two-morphological and molecular data to address this question". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/3c7c79f0-4ee6-4ea0-bc96-1c347d63cb67">https://bionomia.net/dataset/3c7c79f0-4ee6-4ea0-bc96-1c347d63cb67</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/3c7c79f0-4ee6-4ea0-bc96-1c347d63cb67">https://gbif.org/dataset/3c7c79f0-4ee6-4ea0-bc96-1c347d63cb67</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: One new species of Baburia Koçak, 1981 and one of Metendothenia Diakonoff, 1973 (Lepidoptera: Tortricidae: Olethreutinae) from Thailand.
Natural history specimen data linked to collectors and determiners held within, "One new species of Baburia Koçak, 1981 and one of Metendothenia Diakonoff, 1973 (Lepidoptera: Tortricidae: Olethreutinae) from Thailand". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/27f25e00-bfe0-4b05-997f-8bfb2092ac47">https://bionomia.net/dataset/27f25e00-bfe0-4b05-997f-8bfb2092ac47</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/27f25e00-bfe0-4b05-997f-8bfb2092ac47">https://gbif.org/dataset/27f25e00-bfe0-4b05-997f-8bfb2092ac47</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Fanniidae (Insecta, Diptera) from Beijing, China, with key and description of one new species.
Natural history specimen data linked to collectors and determiners held within, "Fanniidae (Insecta, Diptera) from Beijing, China, with key and description of one new species". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/1ebd2beb-8308-4052-8227-aac8dd738056">https://bionomia.net/dataset/1ebd2beb-8308-4052-8227-aac8dd738056</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/1ebd2beb-8308-4052-8227-aac8dd738056">https://gbif.org/dataset/1ebd2beb-8308-4052-8227-aac8dd738056</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Crickets of the subfamily Eneopterinae (Orthoptera: Grylloidea) from Sandakan, Sabah: one new species and calling songs of a sympatric species.
Natural history specimen data linked to collectors and determiners held within, "Crickets of the subfamily Eneopterinae (Orthoptera: Grylloidea) from Sandakan, Sabah: one new species and calling songs of a sympatric species". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/1e87ced1-1631-463d-92d4-508d30dbbc48">https://bionomia.net/dataset/1e87ced1-1631-463d-92d4-508d30dbbc48</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/1e87ced1-1631-463d-92d4-508d30dbbc48">https://gbif.org/dataset/1e87ced1-1631-463d-92d4-508d30dbbc48</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Review of Dissomphalus Ashmead, 1893 (Hymenoptera, Bethylidae) from Espíri- to Santo, Brazil, with description of twenty-one new species.
Natural history specimen data linked to collectors and determiners held within, "Review of Dissomphalus Ashmead, 1893 (Hymenoptera, Bethylidae) from Espíri- to Santo, Brazil, with description of twenty-one new species". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/1b4c3fd4-ecd4-4d0f-9bd4-a300eacd5f27">https://bionomia.net/dataset/1b4c3fd4-ecd4-4d0f-9bd4-a300eacd5f27</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/1b4c3fd4-ecd4-4d0f-9bd4-a300eacd5f27">https://gbif.org/dataset/1b4c3fd4-ecd4-4d0f-9bd4-a300eacd5f27</a>. Formatted as a Frictionless Data package.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.