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2,052 results for “Species tree”
FIGURES 9–14 in A new species of Neobaryssinus Monné & Martins, and two new species of Baryssiniella new genus (Coleoptera: Cerambycidae), reared from trees in the Brazil nut family (Lecythidaceae)
FIGURES 9–14. Ventral views showing sexual dimorphism in ventral pubescence, profemora, and protarsi: 9, N. altissimus, male; 10, B. hieroglyphica, holotype, male; 11, B. tavakiliani, holotype, male; 12, N. altissimus female; 13, B. hieroglyphica female; 12, B. tavakiliani female.
FIGURE 4. Tetra theobromae n in Two new eriophyoid mite species (Trombidiformes: Eriophyoidea) from the cocoa tree, and a note on Shevtchenkella biseta (Nalepa)
FIGURE 4. Tetra theobromae n. sp. L. Lateral habitus, female; GM. External genitalia, male; GF. External genitalia, female; IGF. Internal genitalia, female; E. Dorsal view of empodium, female (enlarged); L1. Leg I, antaxial view, female; L2. Leg II, antaxial view, female.
FIGURE 2. Davisella trevisani n in Two new eriophyoid mite species (Trombidiformes: Eriophyoidea) from the cocoa tree, and a note on Shevtchenkella biseta (Nalepa)
FIGURE 2. Davisella trevisani n. sp. L. Dorsolateral habitus, female; IL. Ventrolateral habitus, immature; ED. Dorsal view of empodium, female (enlarged); EL. Lateral view of empodium, female (enlarged); L1. Leg I, antaxial view, female; L2. Leg II, antaxial view, female.
FIGURE 1. Davisella trevisani n in Two new eriophyoid mite species (Trombidiformes: Eriophyoidea) from the cocoa tree, and a note on Shevtchenkella biseta (Nalepa)
FIGURE 1. Davisella trevisani n. sp. D. Dorsal habitus, female; V. Ventral habitus, female; GF. External genitalia, female; GM. External genitalia, male; PI. Pedipalp, immature (enlarged). PD. Detail of dorsal pedipalp, female (enlarged). PL. Detail of lateral pedipalp, female (enlarged).
FIGURE 3. Tetra theobromae n in Two new eriophyoid mite species (Trombidiformes: Eriophyoidea) from the cocoa tree, and a note on Shevtchenkella biseta (Nalepa)
FIGURE 3. Tetra theobromae n. sp. D. Dorsal habitus. V. Ventral habitus. PS. Prodorsal shield, female.
FIGURE 1. Maximum clade credibility tree after a partitioned Bayesian analysis using 8945 in Phylogenetic analysis of the Neotropical Pristimantis leptolophus species group (Anura: Craugastoridae): molecular approach and description of a new polymorphic species
FIGURE 1. Maximum clade credibility tree after a partitioned Bayesian analysis using 8945 sites depicting the phylogenetic relationships among Pristimantis including the Pristimantis leptolophus species group. Numbers on nodes represent posterior probabilities and ultrafast bootstrap (as obtained in the ML analysis) support respectively. Asterisks represent nodal support larger than 95% in both ML and Bayesian analyses. Two dashes in ultrafast bootstrap indicate the node was not recovered in the ML analysis (see Appendix 2 for the ML tree).
FIGURE 12. Maximum likelihood tree inferred from the COI dataset with 1000 in Two new giant pill-millipede species of the genus Zoosphaerium endemic to the Bemanevika area in northern Madagascar (Diplopoda, Sphaerotheriida, Arthrosphaeridae)
FIGURE 12. Maximum likelihood tree inferred from the COI dataset with 1000 bootstrap pseudoreplicates implementing the GTR+I+G model. Habitus photograph shows Z. bemanevika (FMNH-INS 3196510). Colors used to separate species. Green = Z. bemanevika; Orange = Z. minutus. Circles indicating sister group relationships, as mapped in figure 1.
FIGURE 12. Barcode tree for seven Epigomphus species from Costa Rica. The 1 in Three new species of Epigomphus (Odonata: Gomphidae) from Costa Rica
FIGURE 12. Barcode tree for seven Epigomphus species from Costa Rica. The 1% legend bar measures the percentage of similarity between sequences of adjoining species, where the longer the branch the more disparity between the sequences, with 2% usually indicating a minimum species level of separation.
FIGURE 8. Tree number 8 in A new genus and species of Ingolfiellidae (Crustacea, Ingolfiellida) from the hyporheic zone in the Sierra de la Ventana, and its biogeographic relevance
FIGURE 8. Tree number 8 (rooted by using user-specified out group): Tree length: 276. Consistency indeX (CI): 0.348, Retention indeX (RI): 0.547. Black dot indicates the node eXplained in the teXt.
FIGURE 3. Bayesian consensus tree for Neoplecostomus species obtained from 5 million generations. Numbers after branches are posterior probabilities. Values below 0.95 in Neoplecostomus canastra, a new catfish (Teleostei: Siluriformes) species from upper Rio Paraná basin
FIGURE 3. Bayesian consensus tree for Neoplecostomus species obtained from 5 million generations. Numbers after branches are posterior probabilities. Values below 0.95 are not shown. Results from different methods of species delimitation are shown with bars colored at right side of the phylogeny. Pink bars represent morphospecies, yellow bars GMYC model and blue bars 2% genetic distance between clusters. The upper-left graphic is the Lineage-through-time plot representing the threshold time at -0.007195772 (yellow line).
R code and data for "Intraspecific and intraindividual trait variability decrease with tree species richness in a subtropical tree diversity experiment"
<p>R codes and dataset for tha statistical analyses and production of figures in "Intraspecific and intraindividual trait variability decrease with tree species richness in a subtropical tree diversity experiment" by Castro Sánchez-Bermejo et al.</p>
Data from: Eigenfeature-Enhanced Deep Learning: Advancing Tree Species Classification in Mixed Conifer Forests with Lidar
<p>Data and code used in <i>Lidar-derived eigenfeatures improve species classification using deep-learning in Southwestern mixed conifer forests</i>. Lidar data is provided for UAV-LS and ALS in <i>lidar_data.zip</i>. Las files are named by site and plot (e.g., 3-2). Field data, shapefiles, and code is provided in <i>data.zip</i>. R code is provided for tree segmentation, tree matching, image creation, and neural network cross validation. </p>
Two new species of Aphyllon from northeastern Mexico: Sequence alignments and phylogenetic trees
<p>Plants originally identified as <em>Aphyllon ludovicianum</em> that occur near Monterrey, Nuevo Leon, and Cuatro Ciénegas Bolson, Coahuila, Mexico, were found to not align with the protologue of that species, the close relative <em>A. multiflorum,</em> or any other species of <em>Aphyllon</em>. Following a detailed study of floral morphology, geographic range, host species, and phylogenetic position using dry herbarium specimens, field study and georeferenced color photographs, we propose the new binomials <em>Aphyllon spectabile </em>for the plants from Nuevo Leon and <em>Aphyllon gypsophilum</em> for the plants from Coahuila, Mexico. This increases the taxonomic diversity of <em>Aphyllon</em> to 27 species plus ten additional subspecies. <em>Gymnosperma glutinosum</em> and two species of <em>Xanthisma</em> were reported for the first time as a host species for the genus <em>Aphyllon</em>. We also provide an updated key to <em>Aphyllon</em> in Mexico. </p>
Effects of tree species identity on soil microbial communities in Juglans nigra and Quercus rubra plantations.
<p>Black walnut (<i>Juglans nigra </i>L.) forestry within the Central Hardwoods Region (CHR) has progressed primarily based on studies of trial and error among plantations. Although <i>J. nigra</i> wood has been used for everything from gunstocks in the Revolutionary War to the artfully crafted furniture of today, gaps exist in our knowledge base regarding the impact of this hardwood species on the soil. We aim to evaluate and analyze how <i>J. nigra</i> modified soil bacterial and fungal structure in conjunction with soil properties after 10 years of establishment. Additionally, we used another hardwood tree Northern red oak (<i>Quercus rubra </i>L.) for contrast. Our results showed soil microbial structure is influenced primarily by plant species; then by season, and lastly depth. The alpha-diversity index was increased in <i>J. nigra</i> compared to bulk soil values, whereas <i>Q. rubra</i> decreased the index. The most significant disparities in microbiomes were observed between plant species with <i>J. nigra</i> displaying greater enrichment in <i>Nitrospira</i>, <i>Geobacter</i>, <i>Steroidobacter</i>, <i>Bacillus</i>, and <i>Perlucidibaca</i> while<i> Q. rubra </i>more enriched in <i>Acidobacteria</i> (<i>GP1</i>, <i>GP2</i>, and <i>GP3</i>) and ectomycorrhizal fungi (<i>Tuber</i>, <i>Inocybe</i>, <i>Amanita</i>, and <i>Russula</i>). Finally, the co-occurrence networks showed that <i>J. nigra</i> increased node numbers while <i>Q. rubra</i> increased connection (edge) numbers. Additionally, the<i> Q. rubra </i>network displayed the highest mean degree, density, and clustering coefficient while <i>J. nigra</i> exhibited the highest modularity and average connectivity. In conclusion, our findings highlight the intricate interplay between CHR tree species and soil microbiota.</p>
FIGURE 10. Eric Gouda climbing the tree for a in Four new species of the genus Racinaea (Bromeliaceae) from Ecuador
FIGURE 10. Eric Gouda climbing the tree for a better look at the many bromeliads that cover the branches, especially Racinaea tillii Manzan. & Gouda.
FIGURE 217. The single tree among the 5 in Revision of the Oriental species of the Bengalia peuhi speciesgroup (Diptera, Calliphoridae)
FIGURE 217. The single tree among the 5 most parsimonious trees found in NONA that had the highest fit in Pee-Wee. Numbers above hash marks refer to characters, those below are state transformations. Circles (filled or open) mark unambiguous apomorphic changes, open circles mark changes to homoplasious states (hash mark setting "only discontinuous states mapped as homoplasies). Fit (k=3) 150.7, length 57 steps, CI 0.75, RI 0.77. Output from WinClada.
Species TX OK Distribution Map FH Hosts Scolytini Scolytina Scolytus fagi Walsh 1? SENA 33 ph Celtis, Quercus Scolytus multistriatus (Marsham) 1 1 EX 34 ph Ulmus Scolytus muticus Say 1 1 SENA 35 ph Celtis Scolytus quadrispinosus Say 1 1* SENA 37 ph Carya Scolytus rugulosus (Muller) 1 1 EX 38 ph Prunus Scolytus schevyrewi Semenov 1 1 EX 36 ph Ulmus Hexacolina Pycnarthrum hispidum (Ferrari) 1 MEX+NT 39 ph Ficus Micracina Hylocurus binodatus Wood 1 SENA xy Hylocurus flaglerensis Blackman 1* SENA 41 xy Hylocurus floridensis Atkinson 1* SENA 40 xy Hylocurus langstoni (Blackman) 1 1* SENA 42 xy Hylocurus parkinsoniae Blackman 1 MEX+NT 40 xy Hylocurus rudis (LeConte) 1 1 SENA 43 xy polyphagous Hylocurus schwarzi Blackman 1 SENA 41 xy Micracis suturalis LeConte? 1* SENA 44 xy polyphagous Micracis swainei Blackman 1? SENA 44 xy polyphagous Micracisella nanula (LeConte) 1 1 SENA 45 my polyphagous Micracisella opacithorax (Schedl) 1 MEX+NT 45 my polyphagous Pseudothysanoes acaciae (Blackman) 1 MEX+NT 46 ph Legume trees Pseudothysanoes dislocatus (Blackman) 1 SENA 46 ph Carya Pseudothysanoes frondicolens Wood 1* SWNA 47 ph Yucca Pseudothysanoes heliura Wood 1 MEX+NT 47 xy Pseudothysanoes huachucae Blackman 1 SWNA 48 ph Quercus in Atlas and checklist of the bark and ambrosia beetles of Texas and Oklahoma (Curculionidae: Scolytinae and Platypodinae)
Species TX OK Distribution Map FH Hosts Scolytini Scolytina Scolytus fagi Walsh 1? SENA 33 ph Celtis, Quercus Scolytus multistriatus (Marsham) 1 1 EX 34 ph Ulmus Scolytus muticus Say 1 1 SENA 35 ph Celtis Scolytus quadrispinosus Say 1 1* SENA 37 ph Carya Scolytus rugulosus (Muller) 1 1 EX 38 ph Prunus Scolytus schevyrewi Semenov 1 1 EX 36 ph Ulmus Hexacolina Pycnarthrum hispidum (Ferrari) 1 MEX+NT 39 ph Ficus Micracina Hylocurus binodatus Wood 1 SENA xy Hylocurus flaglerensis Blackman 1* SENA 41 xy Hylocurus floridensis Atkinson 1* SENA 40 xy Hylocurus langstoni (Blackman) 1 1* SENA 42 xy Hylocurus parkinsoniae Blackman 1 MEX+NT 40 xy Hylocurus rudis (LeConte) 1 1 SENA 43 xy polyphagous Hylocurus schwarzi Blackman 1 SENA 41 xy Micracis suturalis LeConte? 1* SENA 44 xy polyphagous Micracis swainei Blackman 1? SENA 44 xy polyphagous Micracisella nanula (LeConte) 1 1 SENA 45 my polyphagous Micracisella opacithorax (Schedl) 1 MEX+NT 45 my polyphagous Pseudothysanoes acaciae (Blackman) 1 MEX+NT 46 ph Legume trees Pseudothysanoes dislocatus (Blackman) 1 SENA 46 ph Carya Pseudothysanoes frondicolens Wood 1* SWNA 47 ph Yucca Pseudothysanoes heliura Wood 1 MEX+NT 47 xy Pseudothysanoes huachucae Blackman 1 SWNA 48 ph Quercus
Species TX OK Distribution Map FH Hosts Phloeotribus liminaris (Harris) 1* 1* SENA 15 ph Prunus Phloeotribus pseudoscabricollis Atkinson 1 MEX+NT 16 ph Zanthoxylum Phloeotribus texanus Schaeffer 1 1* SE+MEX 17 ph Celtis Phloeosinina Chramesus chapuisii LeConte 1 1 SE+MEX 18 ph Celtis Chramesus hicoriae LeConte 1* 1* SENA 19 ph Carya Chramesus mimosae Blackman 1 MEX+NT 18 ph Legume trees Chramesus subopacus Schaeffer 1 MEX+NT 20 ph Celtis Chramesus varius Wood 1 MEX+NT 19 ph Legume trees Phloeosinus cristatus (LeConte) 1 SWNA 21 ph Cupressus Phloeosinus dentatus (Say) 1 1 SENA 22 ph Juniperus Phloeosinus hoferi Blackman 1 SWNA 25 ph Juniperus Phloeosinus scopulorum neomexicanus Blackman 1 SWNA 23 ph Juniperus Phloeosinus serratus (LeConte) 1 SWNA 24 ph Juniperus Phloeosinus taxodii Blackman 1 SE+MEX 21 ph Taxodium Hypoborina Chaetophloeus fasciatus (Blackman) 1 SWNA 26 ph Prosopis Chaetophloeus heterodoxus (Casey) 1 SWNA ph Rosaceae Chaetophloeus mexicanus Wood 1* MEX+NT 27 ph Eysenhardtia Chaetophloeus sulcatus Wood 1* MEX+NT 28 ph Composite shrubs Liparthrum squamosum (Blackman) 1*? SENA 29 ph Maclura pomifera Polygraphina Carphobius arizonicus Blackman 1* SWNA 30 ph Juniperus Carphoborus bicornus Wood 1* 1* SENA 31 ph Pinus Carphoborus bifurcus (Chapuis) 1* SENA 32 ph Pinus Carphoborus convexifrons Wood 1 SWNA 31 ph Pinus in Atlas and checklist of the bark and ambrosia beetles of Texas and Oklahoma (Curculionidae: Scolytinae and Platypodinae)
Species TX OK Distribution Map FH Hosts Phloeotribus liminaris (Harris) 1* 1* SENA 15 ph Prunus Phloeotribus pseudoscabricollis Atkinson 1 MEX+NT 16 ph Zanthoxylum Phloeotribus texanus Schaeffer 1 1* SE+MEX 17 ph Celtis Phloeosinina Chramesus chapuisii LeConte 1 1 SE+MEX 18 ph Celtis Chramesus hicoriae LeConte 1* 1* SENA 19 ph Carya Chramesus mimosae Blackman 1 MEX+NT 18 ph Legume trees Chramesus subopacus Schaeffer 1 MEX+NT 20 ph Celtis Chramesus varius Wood 1 MEX+NT 19 ph Legume trees Phloeosinus cristatus (LeConte) 1 SWNA 21 ph Cupressus Phloeosinus dentatus (Say) 1 1 SENA 22 ph Juniperus Phloeosinus hoferi Blackman 1 SWNA 25 ph Juniperus Phloeosinus scopulorum neomexicanus Blackman 1 SWNA 23 ph Juniperus Phloeosinus serratus (LeConte) 1 SWNA 24 ph Juniperus Phloeosinus taxodii Blackman 1 SE+MEX 21 ph Taxodium Hypoborina Chaetophloeus fasciatus (Blackman) 1 SWNA 26 ph Prosopis Chaetophloeus heterodoxus (Casey) 1 SWNA ph Rosaceae Chaetophloeus mexicanus Wood 1* MEX+NT 27 ph Eysenhardtia Chaetophloeus sulcatus Wood 1* MEX+NT 28 ph Composite shrubs Liparthrum squamosum (Blackman) 1*? SENA 29 ph Maclura pomifera Polygraphina Carphobius arizonicus Blackman 1* SWNA 30 ph Juniperus Carphoborus bicornus Wood 1* 1* SENA 31 ph Pinus Carphoborus bifurcus (Chapuis) 1* SENA 32 ph Pinus Carphoborus convexifrons Wood 1 SWNA 31 ph Pinus
FIGURE 3. Species tree. A in Molecular evidence of the taxonomic status of western Mexican populations of Phaethornis longirostris (Aves: Trochilidae)
FIGURE 3. Species tree. A) Time divergence estimates in years (HPD and 95% confidence interval). B) Densitree showing all trees of the *BEAST analysis. Intensity depicts the congruence among different topologies and branch lengths.
FIGURE 6. Bayesian tree inferred from LSU gene DNA sequences. Posterior probabilities exceeding 50 in A new species of the genus Tripylina Brzeski, 1963 (Nematoda: Enoplida: Trischistomatidae) from Zhejiang Province, eastern China
FIGURE 6. Bayesian tree inferred from LSU gene DNA sequences. Posterior probabilities exceeding 50% are given on appropriate clades. Nematode species and GenBank numbers are listed for each taxon.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.